BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483368
Length=678
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42325.1 | Symbols: | Transcription factor IIS protein | ch... 817 0.0
AT2G42730.1 | Symbols: | F-box family protein | chr2:17787454-... 623 7e-178
AT4G18720.1 | Symbols: | Transcription factor IIS protein | ch... 619 9e-177
> AT5G42325.1 | Symbols: | Transcription factor IIS protein |
chr5:16924102-16924851 REVERSE LENGTH=702
Length=702
Score = 817 bits (442), Expect = 0.0
Identities = 615/694 (89%), Gaps = 30/694 (4%)
Strand=Plus/Plus
Query 12 AGAGTTCTTGGAGTTGTTCGATGCAGCACTTCGAGCGGCTAAGTCTGTGAAAGGTGTTAA 71
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| | |
Sbjct 12 AGAGTTCTTGGAGTTGTTCGAGGCAGCACTTAGAGCGGCTAAGTCTGTGAAAGGTGCTGA 71
Query 72 GAATTCTCCAGAGGTATCGAGGTTTGTTGACGCCATGAATCGTTTGAAGGAAGCTCCTGA 131
|| |||||||||||||| ||||||||| || || |||||||||||||||||||| ||| |
Sbjct 72 GAGTTCTCCAGAGGTATTGAGGTTTGTCGATGCTATGAATCGTTTGAAGGAAGCACCTAA 131
Query 132 GTCACTTGCTTGTGACGTGGTCTGCACAACCTCCATGGGGAAGGGTTTGAGATTCTTCAA 191
|||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 132 GTCACTTGTTTGTGACGTGGTCTGCAAAACCTCCATGGGGAAGGGTTTGGGATTCTTCAT 191
Query 192 AGATCACAAAAACCCTCAAATTCGATCAGAAGGAAAGCTTCTTTGGGATCTTTGGACAAA 251
||||||||||||||| |||||||||| ||||||| | ||||| |||||||||||| ||
Sbjct 192 TGATCACAAAAACCCTAAAATTCGATCGGAAGGAAGGATTCTTCGGGATCTTTGGATGAA 251
Query 252 GATT-ATTCACGCTTCAGGTAGAGAAAAGAGCCGTGATAGAGATACTCCGGTGAAGATTC 310
|||| ||| | |||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 252 GATTCATT-ATGCTTCAGGTAGAGAAAAGAGTCGTGATAGAGAAACTCCGGTGAAGATTC 310
Query 311 CGACGGATTCAACAATAAAGAAGACTGGAGATTCAAAACGAGACAAAGTGCGTGAGATTC 370
||||| ||||||| || |||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 311 CGACGCATTCAACGATGAAGAAGACTGGAGATTCAAAACGAGATAAAGTGCATGAGATTC 370
Query 371 TACAAACATCTTTGGCTAAAGTTGCTACTGAGGTTGTTGACACAGAGATGAAGACACGAG 430
| ||| |||||||||||||||| |||||||||||||||||||| |||||||||| |||||
Sbjct 371 TTCAATCATCTTTGGCTAAAGTCGCTACTGAGGTTGTTGACACGGAGATGAAGAGACGAG 430
Query 431 TC---ACTGCTTGTGATCCTTGGGTTGTGGCTATATCAGTGGAATCTGC-A-----A--- 478
|| |||| |||||||||||||||||||||| |||| ||||||||||| | |
Sbjct 431 TCATGACTGTTTGTGATCCTTGGGTTGTGGCTGTATCTGTGGAATCTGCAATGTCGATTC 490
Query 479 TGTT-----T--GAG--AGTAACAATCCAGATTTGAGGAGGAAAGTGTTAATTGGTGAGA 529
|||| | ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 TGTTCAACATGGGAGATAGTAACAATCCAGATTTGAGGAGGAAAGTGTTAATTGGTGAGA 550
Query 530 TCAATGGAGAGAGACTCGTGACA-ATGGAGAGACAAGAGATGGGGAGTGAGAAGATTCAG 588
||| ||| |||||| | |||| | ||||||| | | ||||||||||||||||||||||||
Sbjct 551 TCAGTGGGGAGAGATTAGTGA-AGATGGAGAAAGACGAGATGGGGAGTGAGAAGATTCAG 609
Query 589 AAGGAAGTTCAAAGGATTAAAGAGA-ATGCAAGATTTAAGGAAGAGAGTCGAATGAAGAT 647
||||| ||||||||||||||||||| | ||||||||||||||||||||||| ||||||||
Sbjct 610 AAGGAGGTTCAAAGGATTAAAGAGAGA-GCAAGATTTAAGGAAGAGAGTCGCATGAAGAT 668
Query 648 GCTTCA-G--TCAGCAGATATGATCATGACTTAG 678
||||| | ||||||||||||||||||||||||
Sbjct 669 GCTTCTTGCATCAGCAGATATGATCATGACTTAG 702
> AT2G42730.1 | Symbols: | F-box family protein | chr2:17787454-17791582
REVERSE LENGTH=2407
Length=2407
Score = 623 bits (337), Expect = 7e-178
Identities = 440/490 (90%), Gaps = 6/490 (1%)
Strand=Plus/Plus
Query 1 ATGCAAAAACAAGAGTTCTTGGAGTTGTTCGATGCAGCACTTCGAGCGGCTAAGTCTGTG 60
||||| || || |||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1664 ATGCAGAAGCAGGAGTTCTTGGAGTTGTACGAGGCAGCACTTCGAGCGGCTAAGTCTGTG 1723
Query 61 AAAGGTGTTAAGAATTC-TCCAGAGGTATCGAGGTTTGTTGACGCCATGAA-TCGTTTGA 118
||||||||||||||||| || | |||| ||||||||||| ||||| | ||| ||||||||
Sbjct 1724 AAAGGTGTTAAGAATTCGTCAA-AGGTTTCGAGGTTTGTGGACGCTA-GAAATCGTTTGA 1781
Query 119 AGGAAGCTCCTG-AGTCACTTGCTTGTGACGTGGTCTGCACAACCTCCATGGGGAAGGGT 177
|||| |||||| | |||||||||||||| ||||||| || |||||||||||||||||||
Sbjct 1782 AGGACGCTCCTACA-TCACTTGCTTGTGAGGTGGTCTCCAAAACCTCCATGGGGAAGGGT 1840
Query 178 TTGAGATTCTTCAAAGATCACAAAAACCCTCAAATTCGATCAGAAGGAAAGCTTCTTTGG 237
||||| ||||| || ||||||||||||||||| |||||||| ||||||| ||||||| ||
Sbjct 1841 TTGAGTTTCTTGAACGATCACAAAAACCCTCATATTCGATCGGAAGGAAGGCTTCTTCGG 1900
Query 238 GATCTTTGGACAAAGATTATTCACGCTTCAGGTAGAGAAAAGAGCCGTGATAGAGATACT 297
|||||||||| |||||| || |||||||||||||||||||||||| |||||||| |||
Sbjct 1901 GATCTTTGGATGAAGATTCTTTACGCTTCAGGTAGAGAAAAGAGCCACGATAGAGAAACT 1960
Query 298 CCGGTGAAGATTCCGACGGATTCAACAATAAAGAAGACTGGAGATTCAAAACGAGACAAA 357
| |||||||||||||||| ||||||| || ||||||||||||||||| ||||||||||||
Sbjct 1961 CAGGTGAAGATTCCGACGCATTCAACGATGAAGAAGACTGGAGATTCGAAACGAGACAAA 2020
Query 358 GTGCGTGAGATTCTACAAACATCTTTGGCTAAAGTTGCTACTGAGGTTGTTGACACAGAG 417
|||||||||||||| ||||||||| ||| |||||| ||| ||||| ||||||||||||||
Sbjct 2021 GTGCGTGAGATTCTTCAAACATCTCTGGTTAAAGTCGCTTCTGAGATTGTTGACACAGAG 2080
Query 418 ATGAAGACACGAGTCACTGCTTGTGATCCTTGGGTTGTGGCTATATCAGTGGAATCTGCA 477
||||||||||||||||||||||||||||||| || |||||| | |||||||||||||||
Sbjct 2081 ATGAAGACACGAGTCACTGCTTGTGATCCTTCTGTCGTGGCTGTTTCAGTGGAATCTGCA 2140
Query 478 ATGTTTGAGA 487
||||||||||
Sbjct 2141 ATGTTTGAGA 2150
Score = 305 bits (165), Expect = 3e-82
Identities = 183/192 (95%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 487 AGTAACAATCCAGATTTGAGGAGGAAAGTGTTAATTGGTGAGATCAATGGAGAGAGACTC 546
||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 2216 AGTAACAATCCGGATTTGAGGAGGAAAGTGTTAATCGGTGAGATCAATGGGGAGAGACTC 2275
Query 547 GTGACAATGGAGAGACAAGAGATGGGGAGTGAGAAGATTCAGAAGGAAGTTCAAAGGATT 606
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2276 GTGACAATGGAGAGACAAGAGATGGGGAGTGAGAAGATTCAGAAGGAGGTTCAAAGGATT 2335
Query 607 AAAGAGAATGCAAGATTTAAGGAAGAGAGTCGAATGAAGATGCTTCAGTCAGCAGATATG 666
|||||||||||||| |||||||||||||||||||||||||| ||||| |||||| ||||
Sbjct 2336 AAAGAGAATGCAAGGTTTAAGGAAGAGAGTCGAATGAAGATTCTTCAATCAGCATCTATG 2395
Query 667 ATCATGACTTAG 678
||||||||||||
Sbjct 2396 ATCATGACTTAG 2407
> AT4G18720.1 | Symbols: | Transcription factor IIS protein |
chr4:10299945-10301228 FORWARD LENGTH=801
Length=801
Score = 619 bits (335), Expect = 9e-177
Identities = 433/480 (90%), Gaps = 7/480 (1%)
Strand=Plus/Plus
Query 13 GAGTTCTTGGAGTTGTTCGATGCAGCACTTCGAGCGGCTAAGTCTGTGAAAGGTGTTAAG 72
|||||| ||||||||||||| ||||||||| |||||||||||||||||||||||| | ||
Sbjct 13 GAGTTCATGGAGTTGTTCGAGGCAGCACTTAGAGCGGCTAAGTCTGTGAAAGGTGATGAG 72
Query 73 AATTCTCCAGAGGTATCGAGGTTTGTTGACGCCATGAATCGTTTGAAGGAAGCTCCTGAG 132
|||||||||||||||||||||||||| || ||||||||||||||||||||||| || ||
Sbjct 73 AATTCTCCAGAGGTATCGAGGTTTGTCGATGCCATGAATCGTTTGAAGGAAGCACCCAAG 132
Query 133 TCACTTGCTTGTGACGTGGTCTGCACAACCTCCATGGGGAAGGGTTT-GAGATTCTTCAA 191
||||||| ||||||||||||||||| ||||||||||||| ||||||| || ||||||||
Sbjct 133 TCACTTGTTTGTGACGTGGTCTGCAAAACCTCCATGGGGCAGGGTTTGGA-ATTCTTCAT 191
Query 192 AGATCACAAAAACCCTCAAATTCGATCAGAAGGAAAGCTTCTTTGGGATCTTTGGACAAA 251
||||||||||||||| |||||||||| ||||||| | ||||| |||||||||||| ||
Sbjct 192 CGATCACAAAAACCCTAAAATTCGATCGGAAGGAAGGATTCTTCGGGATCTTTGGATGAA 251
Query 252 GATTATTCACGCTTCAGGTAGAGAAAAGAGCCGTG---ATAGAGATA-CTCCGGTGAAGA 307
| || || ||||||||||||||||||||||||||| ||||||| | || |||||||||
Sbjct 252 GTTTTTTTACGCTTCAGGTAGAGAAAAGAGCCGTGATAATAGAGA-AGCTGCGGTGAAGA 310
Query 308 TTCCGACGGATTCAACAATAAAGAAGACTGGAGATTCAAAACGAGACAAAGTGCGTGAGA 367
| |||||| | |||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct 311 TCCCGACGCACGCAACGATGAAGAAGACTGGAGATTCAAAGCGAGACAAAGTGCGTGAGA 370
Query 368 TTCTACAAACATCTTTGGCTAAAGTTGCTACTGAGGTTGTTGACACAGAGATGAAGACAC 427
||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||
Sbjct 371 TTCTACAAACATCTTTGGCTAAAGTCGCTTCTGAGGTTGTTGACACGGAGATGAAGACAC 430
Query 428 GAGTCACTGCTTGTGATCCTTGGGTTGTGGCTATATCAGTGGAATCTGCAATGTTTGAGA 487
|||| ||||||||||||||||||||||||||| |||| |||||| |||||||||||||||
Sbjct 431 GAGTGACTGCTTGTGATCCTTGGGTTGTGGCTGTATCTGTGGAAACTGCAATGTTTGAGA 490
Score = 106 bits (57), Expect = 3e-22
Identities = 81/92 (88%), Gaps = 4/92 (4%)
Strand=Plus/Plus
Query 487 AGTAACAATCCAGATTTGAGGAGGAAAGTGTTAATTGGTGAGATCAATGGAGAGAGACTC 546
||||||||||||||||||||||||||||||||| |||||||||| | ||| |||||| |
Sbjct 556 AGTAACAATCCAGATTTGAGGAGGAAAGTGTTACTTGGTGAGATTAGTGGGGAGAGATTA 615
Query 547 GTGACA-ATGGAGA-GACAAGAGATGGGGAGT 576
|||| | ||||||| | ||||||||||||||
Sbjct 616 GTGA-AGATGGAGAAGG-AAGAGATGGGGAGT 645
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32802897991
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5