BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483371
Length=660
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42740.1 | Symbols: RPL16A | ribosomal protein large subunit... 1059 0.0
AT3G58700.1 | Symbols: | Ribosomal L5P family protein | chr3:2... 771 0.0
> AT2G42740.1 | Symbols: RPL16A | ribosomal protein large subunit
16A | chr2:17791729-17793082 FORWARD LENGTH=750
Length=750
Score = 1059 bits (573), Expect = 0.0
Identities = 632/661 (96%), Gaps = 2/661 (0%)
Strand=Plus/Plus
Query 1 CTCCGTCTCTCCTTTCCCGTCGGCCGGTGATAAATTCGCAACCCAAATCCCTAATGGCGT 60
||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct 13 CTCCGTCTCTCCTTTCCCGTCGGCCGGTGATAATTTCGCAACCCAAATTCCAAATGGCGT 72
Query 61 CGGAGAAGAAGCTATCGAACCCAATGAGGGACATCAAAGTGCAGAAGCTGGTGCTCAACA 120
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 73 CGGAGAAGAAGCTATCGAACCCAATGAGGGACATTAAAGTGCAGAAGCTGGTTCTCAACA 132
Query 121 TCTCCGTTGGTGAGAGTGGAGATCGTCTCACCAGAGCTTCCAAGGTTTTGGAACAATTGA 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 133 TCTCCGTTGGTGAGAGTGGAGATCGTCTCACCAGAGCCTCCAAGGTTTTGGAACAATTGA 192
Query 181 GTGGTCAGGCTCCTGTTTTCTCCAAAGCTAGATACACTGTTCGTTCTTTTGGTACCAGAC 240
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 193 GTGGTCAGACTCCTGTTTTCTCCAAAGCTAGATACACTGTTCGTTCTTTTGGTATCAGAC 252
Query 241 GTAACGAGAAGATCGCATGCTATGTTACTGTCAGAGGTGAGAAGGCAATGCAACTACTTG 300
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 253 GTAACGAGAAGATCGCATGCTATGTAACCGTCAGAGGTGAGAAGGCAATGCAACTACTTG 312
Query 301 AAAGTGGATTGAAAGTTAAGGAATACGTACTTCTCAGAAGAAACTTCAGTGACACTGGTT 360
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 313 AAAGTGGATTGAAAGTCAAGGAATACGAACTTCTCAGAAGAAACTTCAGTGACACTGGTT 372
Query 361 CCTTCGGTTTTGGTATTCAAGAACACATTGATTTGGGTATCAAGTATGATCCATCAACTG 420
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 373 GCTTCGGTTTTGGTATTCAAGAACACATTGATTTGGGTATCAAGTACGATCCATCAACTG 432
Query 421 GAATCTACGGTATGGACTTCTATGTAGTCCTAGAACGTCCTGGTTACCGTGTGGCACGTC 480
||||||| ||||||||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 433 GAATCTATGGTATGGACTTCTATGTGGTCCTAGAACGTCCTGGCTACCGTGTAGCACGTC 492
Query 481 GCAGAAGATGCAAGGCTCGTGTTGGTATCCAACACAGAGTAACTAAAGACGAGGCAATGA 540
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 493 GCAGAAGGTGCAAGGCTCGTGTTGGTATCCAACACAGAGTAACTAAAGACGATGCAATGA 552
Query 541 AATGGTTCCAAGTGAAATACGAAGGAGTCATTCTCAACAAGTCCCAGAACATCACTGGCT 600
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 AATGGTTCCAGGTGAAATACGAAGGAGTCATTCTCAACAAGTCCCAGAACATCACTGGCT 612
Query 601 AAAA-AAGTCCTCGAAACTCTTCCTTCTATTTTAGAAAACACTTGTCTCAGTTTTGTTTA 659
|||| || ||||| ||||||| ||||| ||||||||||| || ||||||||||||||||
Sbjct 613 AAAACAATTCCTCCTAACTCTTTCTTCTGTTTTAGAAAACCCT-GTCTCAGTTTTGTTTA 671
Query 660 C 660
|
Sbjct 672 C 672
> AT3G58700.1 | Symbols: | Ribosomal L5P family protein | chr3:21711563-21712955
FORWARD LENGTH=786
Length=786
Score = 771 bits (417), Expect = 0.0
Identities = 537/596 (90%), Gaps = 4/596 (1%)
Strand=Plus/Plus
Query 13 TTTCCCGTCGGCCGGTGATAAATTCGCAACCCAAATCCCTAATGGCGTCGGAGAAGAAGC 72
||||||||||||||| |||| | ||||||||| ||||| ||||||||||||||||||||
Sbjct 59 TTTCCCGTCGGCCGGAGATATA-TCGCAACCCTAATCCGAAATGGCGTCGGAGAAGAAGC 117
Query 73 TATCGAACCCAATGAGGGACATCAAAGTGCAGAAGCTGGTGCTCAACATCTCCGTTGGTG 132
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 118 TATCGAACCCAATGAGGGACATTAAAGTGCAGAAGCTGGTTCTCAACATCTCCGTTGGTG 177
Query 133 AGAGTGGAGATCGTCTCACCAGAGCTTCCAAGGTTTTGGAACAATTGAGTGGTCAGGCTC 192
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||
Sbjct 178 AGAGTGGAGATCGTCTCACCAGAGCCTCCAAGGTGTTGGAACAATTGAGTGGTCAGACTC 237
Query 193 CTGTTTTCTCCAAAGCTAGATACACTGTTCGTTCTTTTGGTACCAGACGTAACGAGAAGA 252
||||||||||||| ||| |||||||||||||||||||||||| |||||||| |||||||
Sbjct 238 CTGTTTTCTCCAAGGCTCGATACACTGTTCGTTCTTTTGGTATAAGACGTAATGAGAAGA 297
Query 253 TCGCATGCTATGTTACTGTCAGAGGTGAGAAGGCAATGCAACTACTTGAAAGTGGATTGA 312
| || |||||||| |||||||| || |||||||||||||| || ||||| ||||||||||
Sbjct 298 TTGCTTGCTATGTGACTGTCAGGGGAGAGAAGGCAATGCAGCTCCTTGAGAGTGGATTGA 357
Query 313 AAGTTAAGGAATACGTACTTCTC-AGAAGAAACTTCAGTGACACTGGTTCCTTCGGTTTT 371
||||||| ||||||| ||| || ||||| |||||||| |||||||||| ||| ||||||
Sbjct 358 AAGTTAAAGAATACGAACT-CTTGAGAAGGAACTTCAGCGACACTGGTTGCTTTGGTTTT 416
Query 372 GGTATTCAAGAACACATTGATTTGGGTATCAAGTATGATCCATCAACTGGAATCTACGGT 431
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 417 GGTATTCAAGAGCACATTGATTTGGGTATCAAGTATGATCCATCGACTGGAATCTACGGC 476
Query 432 ATGGACTTCTATGTAGTCCTAGAACGTCCTGGTTACCGTGTGGCACGTCGCAGAAGATGC 491
|||||||||||||| || || || || || ||||||||||| || || ||||||||||||
Sbjct 477 ATGGACTTCTATGTTGTTCTTGAGCGACCAGGTTACCGTGTTGCGCGCCGCAGAAGATGC 536
Query 492 AAGGCTCGTGTTGGTATCCAACACAGAGTAACTAAAGACGAGGCAATGAAATGGTTCCAA 551
||| |||||||||| ||||| || ||||| || ||||| || || ||||||||||||||
Sbjct 537 AAGACTCGTGTTGGAATCCAGCATAGAGTGACGAAAGATGATGCCATGAAATGGTTCCAG 596
Query 552 GTGAAATACGAAGGAGTCATTCTCAACAAGTCCCAGAACATCACTGGCTAAA-AAA 606
|||||||| ||||||||||||||||||||||| |||||||||||||| |||| |||
Sbjct 597 GTGAAATATGAAGGAGTCATTCTCAACAAGTCTCAGAACATCACTGGTTAAACAAA 652
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31898683345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5