BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483373
Length=1093
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42760.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 1424 0.0
> AT2G42760.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881);
Has 170 Blast hits to 164 proteins in 34 species: Archae
- 0; Bacteria - 1; Metazoa - 26; Fungi - 10; Plants - 107;
Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
| chr2:17795984-17797231 REVERSE LENGTH=1248
Length=1248
Score = 1424 bits (771), Expect = 0.0
Identities = 1026/1141 (90%), Gaps = 49/1141 (4%)
Strand=Plus/Plus
Query 1 ATGGCTGAAGAGGAGTTGTTGAAACTGTTCGAGCAAAACTGGTCAGAGAGATCAATCATC 60
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 47 ATGGCTGGAGAGGAGTTGTTGAAACTGTTCGAGCAAAACTGGTCAGAGAGGCCAATCTTC 106
Query 61 AAGAAAGACAAAGAGAATCTGAATGgaaaaagtcgagagaagcgtagagaaacagagatt 120
||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||
Sbjct 107 AAGAAAGACAAAGAGAATCTGAATGGAAAAAGTAGAGAGAAGCGTGGAGAAAAAGAGATT 166
Query 121 ac-agaggaa--a-aagaagaagaagtgttgaagaaTTTTCCGGTGAGCTTTCTTGTAGA 176
| ||||||| | ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 167 -CTAGAGGAACGACGAGAAGAAGAAGCACTGAAGAATTTTCCGGTGAGCTTTCTTGTAGA 225
Query 177 GAGAGCTATGAGCGATGAGACGATGATGACGACGAGTTCCAAGACAAGTTTGTTTAGTTC 236
||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 226 GAGGGCTATGAGTGACGAGACGATGATGACGACGAGTTCCAAGACAAGTTTGTTTAGTTC 285
Query 237 TTCATCAGATGATTTGTTCTTGTCTCCTAGATCAGTCTTACCCGTTAAACCAACCCCGAT 296
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 286 TTCATCAGATGATTTGTTCTTGTCTCCTAGATCGGTCTTACCCGTTAAACCAACGCCGAT 345
Query 297 GAAGCTTCAGACGATTCTCTCCGGAAAAGAAGTCAACGCGTTCACGATTGCggaaagaga 356
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 GAAGCTTCAGACGATCCTCTCCGGAAAAGAAGTCAACGCGTTCACGATTGCGGAAAGAGA 405
Query 357 gagagtaatttcagagagggaagagcagaggaagaagaagaataaga-g-g-aatgtgag 413
|||| || ||||||||| |||||||||||||||||||||||| |||| | | ||||||||
Sbjct 406 GAGACTACTTTCAGAGAAGGAAGAGCAGAGGAAGAAGAAGAAGAAGAAGAGTAATGTGAG 465
Query 414 aacaagaaagggaaagagTATGTCAGATTTGGAGTACGAGGAGCTTAAAGGGTTTATGGA 473
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 466 AACAAGAAAGGGAAAGAGTATGTCGGATTTGGAGTACGAGGAGCTTAAAGGGTTTATGGA 525
Query 474 TCTAGGTTTTGTCTTTTCCGAGGAAGACCACAAAGACTCCGATCTGGTTTCGATTCTTCC 533
|||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 526 TCTAGGTTTTGTCTTTTCCGAGGATGACCATAAAGACTCCGATCTAGTTTCGATTCTTCC 585
Query 534 TGGATTGCAGAGATTAGTGAAGAAAAATGATGGAGTTGTACAAGTA-AC-AA-AAGAAGA 590
||| || |||||||| ||||||||| |||||||||| | ||| | | || |||||||
Sbjct 586 TGGGTTACAGAGATTGGTGAAGAAAGATGATGGAGTAACAAAAGAAGAAGAAGAAGAAGA 645
Query 591 AGAAGA---CAAGAGCAGTGGAAACAGAGTAGCGAGACCGTATTTGTCGGAAGCGTGGGA 647
|||||| ||| | | |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 646 AGAAGAAGACAAAATCGGTGGAAACAGAGCAGCGAGACCGTATTTGTCGGAAGCGTGGGA 705
Query 648 TCATTGTGGAGGAAGAAAAGGGAAGA------TCACGACAGAGATAAAGTGGAGAGTTCC 701
||||||||||||||||||||| || | ||||| | ||||| ||||||||||||||
Sbjct 706 TCATTGTGGAGGAAGAAAAGGAAAAAAACAAATCACGCCGGAGATTAAGTGGAGAGTTCC 765
Query 702 GGCGCCGGCGGC---TAACGAAGTTGACTTAAAAGATAATCTAAGGCATTGGGCTCATGC 758
|||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 766 GGCGCCGGCGGCGGCTAGCGAAGTTGACTTAAAAGATAATCTAAGGCTTTGGGCTCATGC 825
Query 759 TGTGGCCTCGACTATTCGAAGATAACACA---GCTTGGATTCTAAACATGC--G--AA-C 810
||||||||||||||||||||| ||| ||| |||||||||||||| |||| | || |
Sbjct 826 TGTGGCCTCGACTATTCGAAGTTAATACAAAAGCTTGGATTCTAAAAATGCATGCCAAAC 885
Query 811 TTTTTCTGTATCAATAGTTTTTGATCACTCTGGTTT--AAA-----G-GAA--AA--G-- 856
|||||||||||| ||| |||||| ||| | |||||| ||| | ||| || |
Sbjct 886 TTTTTCTGTATCTATACTTTTTGGTCATTATGGTTTTCAAATTCATGTGAATTAAAAGAA 945
Query 857 ----TCTGTTCACAAAAATTCGATTTTTGTTAGGCGAGAGAGATCTCTGATACGACCATT 912
||||||||||| ||||||||||||||| || |||||||||||||||||||||||||
Sbjct 946 AAAATCTGTTCACAAGAATTCGATTTTTGTTTGGTGAGAGAGATCTCTGATACGACCATT 1005
Query 913 GACCAAGAACAAAAGTGTCATTGTCGGAGAAGAGAATCTATGATGAGGTTTTTAAGTGGT 972
|||| |||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1006 GACCCAGAACAAAAGTGTCCTTGTCGGAGAAGAGAATCTATAATGAGGTTTTTGAGTGGT 1065
Query 973 GGGCCAATCATGTCCAATAATACTCAACACTTGTAATATGGTTTATTGCCACGTCACTAT 1032
||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 1066 GGGCCAATCATATCCAATAATGCTCAACACTTGTCATATGGTTTATTGCCACGTCACTAT 1125
Query 1033 CACATAATTCTCATACAATTGTTGTGCATAATCACGTTGATAACGACGTATTAGTGTATT 1092
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1126 CACATAATTCTCACACAATTGTTGTGCATAATCACGTTGATAACGACTTATTAGTGTATT 1185
Query 1093 A 1093
|
Sbjct 1186 A 1186
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53563981515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5