BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483374
Length=1093
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42770.1 | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PM... 1483 0.0
> AT2G42770.1 | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PMP22)
family protein | chr2:17798285-17800006 REVERSE LENGTH=1128
Length=1128
Score = 1483 bits (803), Expect = 0.0
Identities = 1029/1129 (91%), Gaps = 51/1129 (5%)
Strand=Plus/Plus
Query 1 AAATGGACAGGACTCATTTGCGGTTTTAAAGATTTAGGC-AAA-----CTCTGTTTCGAA 54
|||||||||||||||||||||| |||| ||||||||||| ||| |||||||||||
Sbjct 1 AAATGGACAGGACTCATTTGCGATTTTTAAGATTTAGGCAAAACTCTTCTCTGTTTCGAC 60
Query 55 GaaaaaaaGGAAGCATTTTTTAATGGACGCATTGGGTGGTTGCGGCGGCGCTGGTGGTTT 114
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 G--CAAAAGGAAGCA-TTTTTAATGGACGCATTGGGTGGTTGCGGCGGCGCTGGTGGTTT 117
Query 115 CTGGGGATGGAATGGCTTCGAACAACGGAGAAAGAAGAAGTCTTCCGGCGATAGAGGTAA 174
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 118 CTGGGGATGGAATGGCTTCGATCAACGGAGAAAGAAGAAGTCTTCCGGTGATAGAGGTAA 177
Query 175 GAAAAGGAATTCTGGATCGTCGGATTCCGTCGATGTGAGCAGAGACGCCGGCGGTTATCG 234
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GAAACGTAATTCTGGATCGTCGGATTCCGTCGATGTGAGCAGAGACGCCGGCGGTTATCG 237
Query 235 GTTTCCTTTGAAGCAAGCTGTGACAGCCGGCGCACTCACTTTCACCGGTGACACGATTGC 294
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 238 GTTTCCTTTGAAGCAAGCTGTGACGGCCGGAGCACTCACTTTCACCGGTGACACGATTGC 297
Query 295 TCAGCTATCTGGGAGGTGGAAAAAGAGAACCGCTCTTAAACAATCATCTTCTGAGCTTGA 354
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TCAGCTATCAGGGAGATGGAAAAAGAGAACCGCTCTTAAACAATCATCTTCTGAGCTTGA 357
Query 355 CGAGGGGGAATTGTGGAACATTTTCTCAGAACATGACTGGATTCGTGCGCTGCGGATGAG 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CGAGGGGGAATTGTGGAACATTTTCTCAGAACATGACTGGATTCGTGCGCTGCGGATGAG 417
Query 415 CTCTTACGGGTTTCTTTTGTATGGCCCTGGTTCTTATGCGTGGTACCAATTCCTTGATCA 474
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 418 TTCTTACGGGTTTCTCTTGTATGGTCCTGGTTCTTATGCGTGGTACCAATTCCTTGATCA 477
Query 475 TTCTTTGCCTAAACCAACCGCCACAAATCTAGTGCTTAAGGTTCTGCTTAACCAAGTGAT 534
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 478 TTCTTTGCCTAAACCAACTGCGACAAATCTAGTGCTTAAGGTTCTGCTTAACCAAGTAAT 537
Query 535 CCTCGGTCCTTCTGTGATCGCTGTTATATTTGCTTGGAACAACTTATGGCTGGGAAAACT 594
||| ||||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct 538 CCTTGGTCCATCTGTGATTGCTGTTATATTTGCTTGGAACAACTTGTGGCTGGGAAAGCT 597
Query 595 CTCTGAGCTCGGAAACAAGTATCAGAAAGATGCTCTTCCAACGCTTCTTTATGGATTTCG 654
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 598 CTCTGAGCTTGGAAACAAGTATCAGAAAGATGCTCTTCCTACGCTTCTTTATGGATTTCG 657
Query 655 CTTTTGGGTTCCCGTTAGCATCCTTAACTTTTGGGTAGTCCCGCTTCAAGCTCGTGTAGC 714
||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 658 CTTCTGGGTTCCCGTTAGCATACTTAACTTTTGGGTAGTCCCGCTTCAAGCTCGAGTAGC 717
Query 715 GTTCATGTCCATGGGTTCTGTGTTTTGGAACTTCTACTTATCTTCAACAATGAGCAAGTA 774
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 718 GTTCATGTCCATGGGTTCTGTGTTTTGGAACTTCTACTTATCTTCAACTATGAGCAAGTA 777
Query 775 GTTACATATATATTTGTATTCTTCAGCCTCACAGAGTGATAATATATCATTCTGAAAGTT 834
||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||| |
Sbjct 778 GTTACATTTATATTTGTATTCTTCAGCCTCGCTGAGTGATAATATATCATTCTGAAAGGT 837
Query 835 TTCAA-TACAAAAGTAAGTACTTATAGCCAATA---TATGGAAGGCTCTTCTGATTCTCA 890
||||| ||||||| || | || || |||| | |||||||||||||||| || ||||
Sbjct 838 TTCAAATACAAAATTAC-TG-TT-TA-CCAAGAGACTATGGAAGGCTCTTCTCATCCTCA 893
Query 891 CTCCTTCAGTTTTATTTGCA-TAGCGCA-A-CTAATGTGTTACTCTGATCAAACTCATGG 947
||||||| ||| |||| | || |||| | |||||||||||||||||||||||||||||
Sbjct 894 CTCCTTCC-TTTC-TTTG-AGTATCGCACAACTAATGTGTTACTCTGATCAAACTCATGG 950
Query 948 AACAAAACTATCTCCTCTAAAAACTTAAGTGTTTA-T-TTTT-CTTGAGT-CAACTACTT 1003
|| || ||||||||||||||||||| ||| || | | |||| ||||||| |||||||||
Sbjct 951 AA-AA--CTATCTCCTCTAAAAACTTTAGT-TTGAGTGTTTTTCTTGAGTTCAACTACTT 1006
Query 1004 GCGGGTGTTGTGGAT-ATTAGTT-C-A----TTA--GTATACTGT---A-T----A--AT 1044
| |||||||| |||| ||||||| | | ||| ||||| | | | | | ||
Sbjct 1007 GTGGGTGTTG-GGATTATTAGTTTCGAGAAGTTACTGTATAATTTTTGAATTTTTATCAT 1065
Query 1045 TTTAACTCTCAGTAACAGATTACTTTAAACTTTTGAATCTTATAACTTA 1093
||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1066 TTTAACTCTCAGTAACAAATTACTTTAAACTTTTGAATCTTATGACTTA 1114
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53563981515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5