BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483376
Length=3154
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42790.1 | Symbols: CSY3 | citrate synthase 3 | chr2:1780147... 4813 0.0
AT3G58750.1 | Symbols: CSY2 | citrate synthase 2 | chr3:2172431... 1469 0.0
AT3G58740.1 | Symbols: CSY1 | citrate synthase 1 | chr3:2172077... 1164 0.0
AT2G42780.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 429 8e-119
> AT2G42790.1 | Symbols: CSY3 | citrate synthase 3 | chr2:17801471-17806049
REVERSE LENGTH=3249
Length=3249
Score = 4813 bits (2606), Expect = 0.0
Identities = 3014/3201 (94%), Gaps = 67/3201 (2%)
Strand=Plus/Plus
Query 1 AATGGAGATTTCAGAGAGAGTTCGAGCTCGATTAGCTATTCTCTCAGGGCATTTGGCGGA 60
||||||||| ||||||||||||||||||||||||||| |||||||||| ||||| ||||
Sbjct 58 AATGGAGATATCAGAGAGAGTTCGAGCTCGATTAGCTGTTCTCTCAGGTCATTTATCGGA 117
Query 61 AGGAAAACAGGATTCTCCAGCGATCGAGCGATGGTGCACGTCGGCGGATACGAGTGTCGC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 AGGAAAACAGGATTCTCCAGCGATCGAGCGATGGTGCACGTCGGCGGATACGAGTGTCGC 177
Query 121 ACCGCTTGGATCTTTGAAAGGAACACTGACGATCGTCGACGAACGCACCGGGAAAAAGTA 180
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 178 ACCGCTTGGATCTTTGAAGGGAACACTGACGATCGTCGACGAACGCACCGGAAAAAATTA 237
Query 181 TAAAGTTCCGGTCTCAGATGATGGTACCGTTAAAGCCGTTGATTTCAAAAAGATAGCT-A 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 238 TAAAGTTCCGGTCTCAGATGATGGTACCGTTAAAGCCGTTGATTTCAAAAAGATAG-TGA 296
Query 240 CCGGGAAGGAAGACAAGGGCCTTAAATTATACGATCCAGGTTACTTGAACACGGCTCCTG 299
| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 297 CGGGGAAGGAAGACAAGGGGCTTAAGTTATACGATCCAGGTTACTTGAACACGGCTCCTG 356
Query 300 TTCGATCTTCGATTTCTTACATCGATGGAGATGAAGGGATCCTCCGTTACCGTGGCTACC 359
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 357 TTCGATCTTCGATTTCTTACATCGATGGAGATGAAGGGATCCTTCGTTACCGTGGCTACC 416
Query 360 CAATTGAGGAAATGGCTGAGAACAGCACTTTTCTGGAGGTGGCTTATCTTCTCATGTATG 419
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 417 CAATTGAGGAAATGGCTGAGAACAGTACTTTTCTGGAGGTGGCTTATCTTCTCATGTATG 476
Query 420 GGAATCTGCCCTCTGAAAGTCAGCTATCGGATTGGGAGTTTGCAGTTTCTCAGCATTCAG 479
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 477 GGAATCTGCCCTCTGAAAGTCAGCTATCTGATTGGGAGTTTGCAGTTTCTCAGCATTCAG 536
Query 480 CTGTGCCACAAGGAGTATTAGATATTATACAGTCTATGCCTCATGATGCACACCCAATGG 539
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CTGTGCCACAAGGTGTATTAGATATTATACAGTCTATGCCTCATGATGCACACCCAATGG 596
Query 540 GAGTTCTTGTGAGTGCAATGAGTGCGCTTTCCATCTTTCATCCTGATGCAAATCCTGCTC 599
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 597 GAGTTCTTGTGAGTGCAATGAGTGCGCTTTCCATCTTTCATCCTGATGCTAATCCTGCTC 656
Query 600 TTAGGGGCCAGGATATTTACGATTCTAAACAAGTTAGAGATAAACAAATTATTCGCATTA 659
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 657 TTAGGGGCCAGGATATTTACGATTCAAAACAAGTTAGAGATAAACAAATTATCCGCATTA 716
Query 660 TTGGAAAGGCACCTACAATTGCAGCAGCTGCTTATCTGAGGATGGCAGGGAGGCCTCCTG 719
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 717 TTGGAAAGGCACCAACAATTGCAGCAGCTGCTTATCTGAGGATGGCAGGAAGGCCTCCTG 776
Query 720 TTCTTCCCTCAGGAAACCTTCCTTATGCAGATAATTTCCTCTATATGCTGGATTCCCTGG 779
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 777 TTCTTCCTTCAGGAAACCTTCCTTATGCAGATAATTTCCTCTATATGCTTGATTCCCTGG 836
Query 780 GAAATAGATCCTACAAACCTAATCCTCGGCTGGCTCGGGTTTTGGACATCCTCTTCATAC 839
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 837 GAAATAGATCCTACAAACCTAATCCTCGGCTGGCTCGGGTGTTGGACATCCTCTTCATAC 896
Query 840 TGCATGCAGAGCATGAAATGAACTGCTCCACCGCTGCTGCTCGACATCTTGCCTCTAGCG 899
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 897 TGCATGCAGAGCATGAAATGAACTGCTCCACCGCTGCTGCTCGGCATCTTGCCTCTAGCG 956
Query 900 GTGTTGATGTGTACACTGCTGTTGCTGGAGCTGTGGGAGCGCTTTATGGTCCACTTCATG 959
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 GTGTTGATGTCTACACTGCTGTTGCTGGAGCTGTGGGAGCGCTTTATGGTCCACTTCATG 1016
Query 960 GTGGTGCAAACGAGGCTGTGCTTAAGATGTTGTCAGAGATTGGGACTGTTGAAAATATTC 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 GTGGTGCAAACGAGGCTGTGCTTAAGATGTTGTCAGAGATTGGGACTGTTGAAAATATTC 1076
Query 1020 CAGAGTTCATCGAGGGTGTGAAGAACAGGAAGAGGAAGATGTCTGGTTTTGGACACCGTG 1079
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 CAGAGTTCATTGAGGGTGTGAAGAACAGGAAGAGGAAGATGTCTGGTTTTGGACACCGTG 1136
Query 1080 TGTACAAAAACTATGACCCTCGAGCTAAAGTCATCAAGAACCTGGCTGATGAAGTATTTT 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 TGTACAAAAACTATGACCCTCGAGCTAAAGTCATCAAGAACCTGGCTGATGAAGTATTTT 1196
Query 1140 CCATTGTTGGAAAGGATCCTCTAATTGAGGTAGCTGTTGCTCTTGAGAAGGCAGCTCTCT 1199
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1197 CCATTGTTGGAAAGGATCCTCTAATTGAGGTTGCTGTTGCACTTGAGAAGGCAGCTCTCT 1256
Query 1200 CTGACGATTACTTTGTTAAGAGAAAGCTTTATCCAAATGTTGATTTCTACTCCGGATTAA 1259
|||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||
Sbjct 1257 CTGACGATTACTTTGTTAAGAGAAAGCTGTATCCAAATGTTGACTTCTACTCTGGATTAA 1316
Query 1260 TATACAGGGCAATGGGATTTCCACCAGAGTTCTTCACGGTCTTATTCGCGATTCCTCGCA 1319
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1317 TATACAGGGCAATGGGATTTCCACCGGAGTTCTTCACGGTCTTATTCGCGATTCCTCGCA 1376
Query 1320 TGGCTGGATACTTGTCGCATTGGAAAGAGTCGTTGGATGATCCTGACACCAAGATCATGA 1379
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1377 TGGCTGGATACTTGTCACATTGGAAAGAGTCACTGGATGATCCTGACACCAAGATCATGA 1436
Query 1380 GACCACAACAGGTGTACACAGGCGTGTGGCTGAGGCATTACACGCCAGTGAGAGAGAGAA 1439
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1437 GACCACAACAGGTGTACACAGGCGTGTGGCTGAGGCATTACACACCAGTGAGAGAGAGAA 1496
Query 1440 TTGTGACGGATGACTCTAAAGAGTCGGACAAATTGGGTCAAGTCTCGACTTCAAATGCAT 1499
| |||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||
Sbjct 1497 TAGTGACGGATGACTCGAAAGAGTCAGACAAATTGGGTCAAGTCGCGACTTCAAATGCAT 1556
Query 1500 CAAGAAGACGTTTGGCTGGATCTTCAGTTTAGGCGTAGGCCCTTTTAGGGTCCATACTAT 1559
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1557 CAAGAAGACGTTTGGCTGGATCTTCAGTTTAGACGTAGGCCCTTTTAGGGTCCATACTAT 1616
Query 1560 ACATCAAACCACACCCCAAAGAATAAAAGAGATTGGTTTCTCTAGCCAAAAGCTAAGAGA 1619
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1617 ACATCAAACCACACCGCAAAGAATAAAAGAGATTGGTTTCTCTAGCCTAAAGCTAAGATA 1676
Query 1620 CTGGATCATACTCTAAA-TTAAGATTTCTCATTTTGTAGGCACAATAAAG-CAT-AT--A 1674
|| |||||||||| ||| ||| ||||||||||||||||||||||||| || | | || |
Sbjct 1677 CTTGATCATACTCGAAACTTA-GATTTCTCATTTTGTAGGCACAATATAGACTTGATCTA 1735
Query 1675 TATTTGCTTCAATCCATCTTCTAAGGGTGTTTGTTCGCACCTTGTTTGTATTCTTATCAG 1734
|||||||||||||||||||||||||||||||||| ||| | |||||||| ||||||||||
Sbjct 1736 TATTTGCTTCAATCCATCTTCTAAGGGTGTTTGTCCGC-C-TTGTTTGTCTTCTTATCAG 1793
Query 1735 AATGTGTTTATCGTATAAAATGATTTATGTTTATGGATTATTACTCTAATTTCTATATCG 1794
|| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1794 AACGTGTTTATTGTATAAAATGATTTATGGTTATGGATTATTACTCTAATTTCTATATCG 1853
Query 1795 AATGCTTCTACGGAGACTTTTGTTGTGAAATTTCTCGGCCAAAGCAA-AAGCTAGAAAAC 1853
||||||||| | ||||| ||||||||||||| ||||||||||||||| ||| ||||||||
Sbjct 1854 AATGCTTCTGCAGAGACGTTTGTTGTGAAATATCTCGGCCAAAGCAACAAG-TAGAAAAC 1912
Query 1854 AAAGCACTTTATTAAATCATTATAGAAACCTTTGAAGATCTATTGTTACAAAATAGGATA 1913
||||||||||||||||||||| || |||| |||||||||||||||||||||| |||||||
Sbjct 1913 AAAGCACTTTATTAAATCATTGTAAAAACTTTTGAAGATCTATTGTTACAAACTAGGATA 1972
Query 1914 TCATCAAGCTACAAAGTTTCAAAATTCGGAGTTCTTGAAACTTGA--T-G--AT--A--- 1963
||||||||| || |||||||||| |||||||||||||||||||| | | || |
Sbjct 1973 TCATCAAGC--CAGAGTTTCAAAACTCGGAGTTCTTGAAACTTGAAGTAGCCATGTAAAT 2030
Query 1964 ----CACTTGAAGAAAAATATTATCTGTAAAAA-GCTATATAAGTTACATTACATGTTTT 2018
|||| ||||||||| || ||||||||||| ||||||||||||||||||||||||||
Sbjct 2031 GATACACTCGAAGAAAAA-ATGATCTGTAAAAAAGCTATATAAGTTACATTACATGTTTT 2089
Query 2019 TGTCTGGTGGCTGCATTTTTTGAAGTTGAAGGAGCAGTCCCCGGAAGGCTGTTGATCCTC 2078
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 2090 TGTCTGGTGGCTGCATTTTTTGAAGTTGAAGGAGCAGTCCCAGGAAGGCCGTTGATCCTC 2149
Query 2079 TTTGGAGGTAGCTTTTGTCCACCAGAAGGAATGCTTCTTGAAGTTGAAGTCGCATTCGCG 2138
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||
Sbjct 2150 CTTGGAGGTAGCTTTTGTCCACCAGAAGGAACGCTTCTTGAAGTTGAAGGCGCATTAGCG 2209
Query 2139 GATAAGCCAGTCCTCTTTGGAGCAGAAATACTAGACAAGACATGATCCATCGAACCGATC 2198
|||||||||||||||||||||||||| |||||| |||||||||||||| || ||||||||
Sbjct 2210 GATAAGCCAGTCCTCTTTGGAGCAGATATACTATACAAGACATGATCCGTCAAACCGATC 2269
Query 2199 AAGTTTGAGG-ATAAAGAATGTGGATCGATATAGTTATATAGATACTGAGGCCATGTTAC 2257
||||||| || |||||||| ||||||| |||||| |||||||||||||||| ||||||||
Sbjct 2270 AAGTTTGGGGGATAAAGAA-GTGGATCCATATAGATATATAGATACTGAGGACATGTTAC 2328
Query 2258 CTGAAACTCTTCTGAATCGTGTTCCTTTTAATGTCAGTAAGATTTCGTCCACCAAAAGGA 2317
|||||||||||||||||||||||| ||||| | ||||||||||||||||||||| |||||
Sbjct 2329 CTGAAACTCTTCTGAATCGTGTTCTTTTTAGTTTCAGTAAGATTTCGTCCACCATAAGGA 2388
Query 2318 ATGCTTCTTGAAGTTGAAGGCGCATTCGCAGATAAGCTAGTCCTCTTTGGAGTAGAAATA 2377
|||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||
Sbjct 2389 ATGCTTCTTGAAGTTGAAGGCGAATTCGCAGATAAGCCAGTTTTCTTTGGAGTAGAAATA 2448
Query 2378 CTAGACAAGACATGATCCATCAAACCGGTCAGCAAGTTTGGGGGATTAA-GA-TCGTGGA 2435
||||||||||||||||| ||||||||| |||| ||||||||||| || || | ||||
Sbjct 2449 CTAGACAAGACATGATCAATCAAACCGATCAG---GTTTGGGGGAT-AACGAAT-GTGGG 2503
Query 2436 TCAATATAGATAAATAGATGCTGGGGAGATAATACCTGAAACTCTTCTGAATCGTGTTCC 2495
| |||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 2504 TTGATATAGCTAAATAGATGCTGGGGAGATGATACCTGAAACTCTTCTGAATGGTGTTCC 2563
Query 2496 TTTTAATAGCAGTAAGATTTTTCACTTCTTGACTGTAATCAAAACCATTAGAAGATTTGA 2555
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2564 TTTTAATCGCAGTAAGATTTTTCACTTCTTGACTGTAATCAAAACCATCAGAAGATTTGA 2623
Query 2556 ATTAAGAAATAGATTTTTGCTCGAAACCTTATAAGTAAGCCTTGTGATTGTGCATTTTTG 2615
||||||||||||||| ||||| |||||||||||||||| || ||||||||||| ||||
Sbjct 2624 ATTAAGAAATAGATTGTTGCTATAAACCTTATAAGTAAGACTGGTGATTGTGCAACTTTG 2683
Query 2616 AAGTGTACCTCTTCAACAGATCTAGTTTTGCCTTCTTCATGATGTTGCTCTTCACATTCC 2675
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 2684 AAGTGTACCTCTTCAACAGATCTATTTTTGCCTTCTTCATGATGTTGCTCTTCACATGCC 2743
Query 2676 CAAGATTGTAACCTGATGCACTATTCCCTGCAA-AGAAACCGTCCCATATAACCA--A-A 2731
||||||||||||||||||||||||| ||||||| | ||| ||||| ||||||||| | |
Sbjct 2744 CAAGATTGTAACCTGATGCACTATTACCTGCAACA-AAATCGTCC-ATATAACCATTAGA 2801
Query 2732 --A-----GCCAG-GGGaaaaaaa-CTAATATATGCATGAAGCATTTCCATAATGTTTTT 2782
| ||||| |||||||||| |||||||||||||| ||||||| |||| |||||||
Sbjct 2802 TTACAAAAGCCAGAGGGAAAAAAAACTAATATATGCATGGAGCATTTGCATACTGTTTTT 2861
Query 2783 -G-CAAGATCTGACCAGATGCTGCAAAAAATCATTAAGATTaaaaaaa-GTGTTACCCCA 2839
| ||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||
Sbjct 2862 TGGCAAGATCTGACCAGATGCTGCAAGAAATCATTTAGATTAAAAAAATGTGTTACCCCA 2921
Query 2840 AAATGGTCTTTTGCTTGGAGGAGCTTTCGAGCAGACCTTAGTTTGTCGACTTTGTTTCCC 2899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2922 AAATGGTCTTTTGCTTGGAGGAGCTTTCGAGCAGACCTTAGTTTGTCGACTTTGTTTCCC 2981
Query 2900 TGACAAAAGGAAACTGAAAACGATTACAAGGGAACGAAAGAAGAATAA-ATTTCAGTCTA 2958
||||||||||||||||||||||||||||||||||||||||||||| || |||| ||| |
Sbjct 2982 TGACAAAAGGAAACTGAAAACGATTACAAGGGAACGAAAGAAGAA-AATATTTTGGTCAA 3040
Query 2959 AGAACATGCTTCTCATCATTGAGCTAACGGCCATAATAAAAAGACAGATTCGTAAAA-GT 3017
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||
Sbjct 3041 AGAACATGCTTCTCATCATTGAGCTAACGGCCATAACAAAA-GACAGATTCGTAAAAAGT 3099
Query 3018 TATACTTTCATTTTCGTCCTTGTAACGTTCTTTCAGTCGATCAACA-GCTTTCTTCTC-T 3075
|||||||||||||||||||||||||||||||||||||||| || || | || |||||| |
Sbjct 3100 TATACTTTCATTTTCGTCCTTGTAACGTTCTTTCAGTCGACCACCAAG-TTCCTTCTCCT 3158
Query 3076 TCTTGTTGCACAGCTATAACCTTCAACTGCACGAAACCATGTGCAT--ATATCTTAAATA 3133
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3159 T-TTGTTGCACAGCTATAACCTTCAACTGCACGAAACCATGTGCATGTATATCTTAAATA 3217
Query 3134 TTTCAACACTTAAATATGTAT 3154
|||||||||||||||||||||
Sbjct 3218 TTTCAACACTTAAATATGTAT 3238
> AT3G58750.1 | Symbols: CSY2 | citrate synthase 2 | chr3:21724314-21727690
REVERSE LENGTH=2027
Length=2027
Score = 1469 bits (795), Expect = 0.0
Identities = 1215/1417 (86%), Gaps = 31/1417 (2%)
Strand=Plus/Plus
Query 119 GCACCGCTTGGATCTTTGAAAGGAACAC-TGACGATCGTCGACGAACGCACCGGGAA-AA 176
||||| | |||||| | ||||||| || ||||||||||||| || || || ||||| ||
Sbjct 365 GCACCTCATGGATCACTCAAAGGAA-ACTTGACGATCGTCGATGAGCGTACGGGGAAGAA 423
Query 177 AGTATAAAGTTCCGGTCTCAGATG-ATGGTACCGTTAAAGCCGTTGATTTCAAAAAGATA 235
| ||| | || || |||||||| | ||||||||||||||||||||||| |||| ||||||
Sbjct 424 A-TATCAGGTCCCTGTCTCAGA-GCATGGTACCGTTAAAGCCGTTGATCTCAAGAAGATA 481
Query 236 GCTACCGGGAAGGAAGACAAGGGCCTTAAATTATACGATCCAGGTTACTTGAACACGGCT 295
| || |||||||| || ||||| || || || |||||||| ||||||||||||||||||
Sbjct 482 ACGACGGGGAAGGATGATAAGGGGCTGAAGTTGTACGATCCTGGTTACTTGAACACGGCT 541
Query 296 CCTGTTCGATCTTCGATTTCTTACATCGATGGAGATGAAGGGATCCTCCGTTACCGTGGC 355
|| |||||||||||||||| ||||||||| ||||||||||| ||| | ||||| || ||
Sbjct 542 CCGGTTCGATCTTCGATTTGTTACATCGACGGAGATGAAGGAATCTTACGTTATCGGGGA 601
Query 356 TACCCAATTGAGGAAATGGCTGAGAACAGCACTTTTCTGGAGGTGGCTTATCTTCTCATG 415
||||||||||| || ||||||||| ||| |||||| | ||||| |||||||| ||||||
Sbjct 602 TACCCAATTGAAGAGTTGGCTGAGAGCAGTACTTTTATTGAGGTTGCTTATCTCCTCATG 661
Query 416 TATGGGAATCTGCCCTCTGAAAGTCAGCTATCGGATTGGGAGTTTGCAGTTTCTCAGCAT 475
||||| |||||||| ||| ||||||||||| | ||||||||||| | ||||||||||||
Sbjct 662 TATGGAAATCTGCCTTCTCAAAGTCAGCTAGCTGATTGGGAGTTCACTGTTTCTCAGCAT 721
Query 476 TCAGCTGTGCCACAAGGAGTATTAGATATTATACAGTCTATGCCTCATGATGCACACCCA 535
||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 722 TCAGCTGTGCCACAAGGAGTATTGGATATCATACAGTCCATGCCTCATGATGCACACCCA 781
Query 536 ATGGGAGTTCTTGTGAGTGCAATGAGTGCGCTTTCCATCTTTCATCCTGATGCAAATCCT 595
|||||||||||||||||||| |||||||| ||||| |||||||| |||||||||||||||
Sbjct 782 ATGGGAGTTCTTGTGAGTGCCATGAGTGCACTTTCTATCTTTCACCCTGATGCAAATCCT 841
Query 596 GCTCTTAGGGGCCAGGATATTTACGATTCTAAACAAGTTAGAGATAAACAAATTATTCGC 655
|||||||| ||||| || |||||| | || ||||||||| | |||||||| ||| |||||
Sbjct 842 GCTCTTAGTGGCCAAGACATTTACAAGTCAAAACAAGTTCGTGATAAACAGATTGTTCGC 901
Query 656 ATTATTGGAAAGGCACCTACAATTGCAGCAGCTGCTTATCTGAGGATGGCAGGGAGGCCT 715
||| | ||||||||||| ||||||||||||||||||||| |||||| |||||| ||||||
Sbjct 902 ATTCTCGGAAAGGCACCAACAATTGCAGCAGCTGCTTATTTGAGGACGGCAGGCAGGCCT 961
Query 716 CCTGTTCTTCCCTCAGGA-AACCTTCCTTATGCAGATAATTTCCTCTATATGCTGGATTC 774
||||||||||| || || |||||| ||||| |||| |||||||||||||||||||||||
Sbjct 962 CCTGTTCTTCCTTC-GGCCAACCTTTCTTATTCAGAGAATTTCCTCTATATGCTGGATTC 1020
Query 775 CCTGGGAAATAGATCCTACAAACCTAATCCTCGGCTGGCTCGGGTTTTGGACATCCTCTT 834
|||| ||||| || ||||| ||||||||||| ||||||| || |||||||||||||
Sbjct 1021 AATGGGCAATAGGTCTTACAAGCCTAATCCTCGTTTGGCTCGAGTGCTGGACATCCTCTT 1080
Query 835 CATACTGCATGCAGAGCATGAAATGAACTGCTCCACCGCTGCTGCTCGACATCTTGCCTC 894
|||||||||||| || ||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 1081 CATACTGCATGCTGAACATGAAATGAACTGCTCTACTGCTGCTGCTCGGCATCTTGCCTC 1140
Query 895 TAGCGGTGTTGATGTGTACACTGC-TGTTGCTGGAGCTGT-GGGAGCGCTTTATGGTCCA 952
||| ||||||||||||||||| || ||| ||||||||||| ||| |||||||||||||||
Sbjct 1141 TAGTGGTGTTGATGTGTACACCGCATGT-GCTGGAGCTGTTGGG-GCGCTTTATGGTCCA 1198
Query 953 CTTCATGGTGGTGCAAACGAGGCTGTGCTTAAGATGTT-GTCAGAGATTGGGACTGTTGA 1011
||||||||||| || |||||||| |||||||||||||| | ||||||||||||||| |||
Sbjct 1199 CTTCATGGTGGCGCGAACGAGGCCGTGCTTAAGATGTTAG-CAGAGATTGGGACTGCTGA 1257
Query 1012 AAATATTCCAGAGTTCATCGAGGGTGTGAAGAACAGGAAGAGGAAGATGTCTGGTTTTGG 1071
|||||||||||| ||||| || || ||||||||||| |||||||||||||| ||||||||
Sbjct 1258 AAATATTCCAGATTTCATTGAAGGCGTGAAGAACAGAAAGAGGAAGATGTCAGGTTTTGG 1317
Query 1072 ACACCGTGTGTACAAAAACTATGACCCTCGAGCTAAAGTCATCAAGAACCTGGCTGATGA 1131
||| ||||| ||||||||||||||||| ||||| ||||| || || || ||||| |||||
Sbjct 1318 ACATCGTGTTTACAAAAACTATGACCCCCGAGCAAAAGTTATAAAAAAACTGGCAGATGA 1377
Query 1132 AGTATTTTCCATTGTTGGAAAGGATCCTCTAATTGAGGTAGCTGTTGCTCTTGAGAAGGC 1191
||| || ||||||||||| | ||||||||| || |||||||| |||||||| ||||||||
Sbjct 1378 AGTGTTCTCCATTGTTGGTAGGGATCCTCTCATCGAGGTAGCAGTTGCTCTAGAGAAGGC 1437
Query 1192 AGCTCTCTCTGACGATTACTTTGTTAAGAGAAAGCTTTATCCAAATGTTGATTTCTACTC 1251
|| || ||||| || || ||||||||||||||||| || ||||||||||||||||||||
Sbjct 1438 GGCACTGTCTGATGAATATTTTGTTAAGAGAAAGCTGTACCCAAATGTTGATTTCTACTC 1497
Query 1252 CGGATTAATATACAGGGCAATGGGATTTCCACCAGAGTTCTTCACGGTCTTATTCGCGAT 1311
|||||||| || |||||||||||||| |||||||| |||||||| ||| | ||||| |
Sbjct 1498 TGGATTAATCTATAGGGCAATGGGATTCCCACCAGAATTCTTCACAGTCCTGTTCGC-AG 1556
Query 1312 TCCTCGC--ATGGCTGGATACTTGTCGCATTGGAAAGAGTCGTTGGATGATCCTGACACC 1369
||| ||| ||||||||||||||||| || ||| |||||||| ||||||||||||||
Sbjct 1557 TCC-CGCGTATGGCTGGATACTTGTCACACTGGCGTGAGTCGTTAGATGATCCTGACACT 1615
Query 1370 AAGATCATGAGACCACAACAGGTGTACACAGGCGTGTGGCTGAGGCATTAC-ACGCCAGT 1428
| |||||||||||| ||||||| || || || |||||| ||||||||||| | ||||||
Sbjct 1616 AGGATCATGAGACCCCAACAGGCCTATACTGGAGTGTGGATGAGGCATTACGA-GCCAGT 1674
Query 1429 GAGAGAGA-GAA--TTGTGACGGATGACTCTAA-AGAGTCGGACAAATTGGGTCAAGTCT 1484
|||||| | ||| || | | | ||| || | | || | | || || |||||||| |
Sbjct 1675 GAGAGA-ACGAACGTTATCAAG--TGATTCGGATA-AG--G-ATAAGTTTGGTCAAGTTT 1727
Query 1485 CGACTTCAAATGCATCAAGAAGACGTTTGGCTGGATC 1521
| | ||| |||||||||||||| ||||| ||||||||
Sbjct 1728 CCATTTCGAATGCATCAAGAAGGCGTTTAGCTGGATC 1764
> AT3G58740.1 | Symbols: CSY1 | citrate synthase 1 | chr3:21720773-21723790
REVERSE LENGTH=1800
Length=1800
Score = 1164 bits (630), Expect = 0.0
Identities = 1251/1545 (81%), Gaps = 66/1545 (4%)
Strand=Plus/Plus
Query 1 AATGGAGATTTCAGAGAGAGTTCGAGCTCGATTAGCTATTCTCTCA-GGGCATTTGGC-G 58
|||||||||||| ||||||| | ||||||||||||| ||||| | | ||| ||| | |
Sbjct 64 AATGGAGATTTCGGAGAGAGCTAGAGCTCGATTAGCCGTTCTC-AATGCGCACTTGACAG 122
Query 59 GA----AG--GAAAACAGGAT-TCT-CCAGCGATCGAGCGATGGTGCACGTCGGCGGATA 110
| || | || |||| | | | ||||||||||| | ||||||||| ||||| | |
Sbjct 123 TATCTGAGCCG-AATCAGG-TGT-TGCCAGCGATCGAACCATGGTGCACATCGGCTCACA 179
Query 111 CGAGTGTC-GCACCGCTTGGATC-TTTGAAAGGAACA-CTGACGATCGTCGACGAACGCA 167
| | | ||||||| |||||| || ||||||| | ||| ||||||||| || || |
Sbjct 180 TAACCG-CTGCACCGCATGGATCGCTT-AAAGGAA-ATTTGAAGATCGTCGATGAGCGTA 236
Query 168 CCGGGAA-AAAGTATAAAGTTCCGGTCTCAGATG-ATGGTACCGTTAAAGCCGTTGATTT 225
| ||||| || ||| | || || |||||||| | |||||||||||||| |||||||| |
Sbjct 237 CGGGGAATGAA-TATCAGGTCCCAGTCTCAGA-GCATGGTACCGTTAAAACCGTTGATCT 294
Query 226 CAAAAAGATAGCTACCGGGAAGGAAGACAAGGGCCTTAAATTATACGATCCAGGTTACTT 285
||| |||||| | || |||||||| |||||||| ||||| ||||||||||| ||||||||
Sbjct 295 CAAGAAGATAACGACAGGGAAGGATGACAAGGGGCTTAACTTATACGATCCTGGTTACTT 354
Query 286 GAACACGGCTCCTGTTCGATCTTCGATTTCTTACATCGATGGAGATGAAGGGA-TCCTCC 344
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
Sbjct 355 AAACACGGCTCCTGTTCGATCTTCGATTTCTTACATCGATGGAGATGA-GGGAATCCTAC 413
Query 345 GTTACCGTGGCTACCCAATTGAGGAAATGGCTGAGAACAGCACTTTT-CTGGAGGTGGCT 403
|||| || || |||||| ||||||| |||||||||| || |||| | | | |||| ||
Sbjct 414 GTTATCGGGGATACCCAGTTGAGGAGTTGGCTGAGAAAAGTACTTATACAG-AGGTTACT 472
Query 404 TATCTTCTCATGTATGGGAATCTGCCCTCTGAAAGTCAGCTATCGGATTGGGAGTTTGC- 462
||||| || || |||||||||||||| ||| |||| |||||| | ||||||||||||||
Sbjct 473 TATCTCCTAATTTATGGGAATCTGCCTTCTCAAAGACAGCTAGCTGATTGGGAGTTTGCG 532
Query 463 AGTTTCTCAGCATTCAGCTGTGCCACAAGGAGTATTAGATATTATACAGTCTATGCCTCA 522
| |||||||| ||||||||||||||||||||||||| ||||| |||||||| |||||| |
Sbjct 533 A-TTTCTCAGAATTCAGCTGTGCCACAAGGAGTATTGGATATGATACAGTCCATGCCTAA 591
Query 523 TGATGCACACCCAATGGGAGTTCTTGTGAGTGCAATGAGTGCGCTTTCCATCTTTCATCC 582
||||| ||| ||| | |||| |||||| | |||||||||||| |||||||||||| ||||
Sbjct 592 TGATGTACATCCAGTAGGAGCTCTTGTCACTGCAATGAGTGCACTTTCCATCTTTTATCC 651
Query 583 TGATGCAAATCC-TGCTCTTAGGGGCC-AGGATATTTACGATTCTAAACAAGTTAGAGAT 640
|||||||||||| | |||||| ||||| ||| | ||||| | || ||||||||| | |||
Sbjct 652 TGATGCAAATCCGT-CTCTTATGGGCCTAGG-TGTTTACAAGTCAAAACAAGTTCGTGAT 709
Query 641 AAACAAATTATTCGCATTATTGGAAAGGCACCTACAATTGCAGCAGCTGCTTATCTGAGG 700
||||| ||| |||| || ||||| |||| || ||||||||||||||||||||| |||||
Sbjct 710 AAACAGATTGTTCGTGTTCTTGGACAGGCCCCAACAATTGCAGCAGCTGCTTATTTGAGG 769
Query 701 ATGGCAGGGAGGCCTCCTGTTCTTCCCTC-AGGAAACCTTCCTTATGCAGATAATTTCCT 759
| |||||| | ||||||||||| || | || || |||| ||||| |||| ||||||||
Sbjct 770 AAGGCAGGCAAGCCTCCTGTTCAACCTTTGAGCAA-CCTTTCTTATTCAGAGAATTTCCT 828
Query 760 CTATATGCTGGATTCCCTGGGAAATAGATCCTACAAACCTAATCCTCGGCTGGCTCGGGT 819
||||||| |||| || ||||| |||| || ||||| ||||||||||| ||||||| ||
Sbjct 829 CTATATGGTGGAATCAATGGGAGATAGGTCTTACAAGCCTAATCCTCGTTTGGCTCGAGT 888
Query 820 TTTGGACATCCTCTTCATACTGCATGCAGAGCATGAAATGAACTGCTCCACCGCTGCTGC 879
|||||||||||||||||||||| || || ||||||||||||||||| || ||||||||
Sbjct 889 GCTGGACATCCTCTTCATACTGCAAGCTGAACATGAAATGAACTGCTCTACTGCTGCTGC 948
Query 880 TCGACATCTTGCCTCTAGCGGTGTTGATGTGTACACTGCTGTTGCTGGAGCTGTGGGAGC 939
| | || ||| ||||||| |||| ||||||||| ||||||||| | |||| ||| |||||
Sbjct 949 TAGGCACCTTTCCTCTAGTGGTGGTGATGTGTATACTGCTGTTTCGGGAGGTGTTGGAGC 1008
Query 940 GC-TTTATGGTCCACTTCATGGTGGTGCAAACGAGGCTGTGCTTAAGATGTTGTCAGAGA 998
| |||||||||| ||||||||||||||| |||||| | |||| ||||| |||||||
Sbjct 1009 -CATTTATGGTCCCCTTCATGGTGGTGCAGTTGAGGCTACGATTAACATGTTATCAGAGA 1067
Query 999 TTGGGACTGTTGAAAATATTCCAGAGTTCATCGAGGGTGTGAAGAACAGGAAGAGGAAGA 1058
||||||||||||||||||||||||||||||| || | |||||||| | |||||||| |
Sbjct 1068 TTGGGACTGTTGAAAATATTCCAGAGTTCATTGAAAGCGTGAAGAATAAGAAGAGGAGGT 1127
Query 1059 TGTCTGGTTTTGGACACCGTGTGTACAAAAACTATGA-CCCTCGAGCTAAAGTCATCAAG 1117
|||| |||||||||||||| | ||||||||||| || ||| ||| |||||| | |||
Sbjct 1128 TGTCGGGTTTTGGACACCGCATTTACAAAAACTACGATCCCA-GAGGAAAAGTCGTTAAG 1186
Query 1118 AACCTGGCTGATGAAGTATTTTCCATTGTTGGAAAGGATCCTCTAATTGAGGTAGCTGTT 1177
|| ||||| |||||||| || |||||| |||||| ||||||||| ||||||||| | |
Sbjct 1187 AAACTGGCGGATGAAGTGTTCTCCATTCTTGGAAGGGATCCTCTGGTTGAGGTAGGAGAT 1246
Query 1178 GCTCTTGAGAAGGCAGCTCTCTCTGACGATTACTTTGTTAAGAGAAAGCTTTATCCAAAT 1237
||||| |||||||| || || ||||| || || ||||||||||||||||| || ||||||
Sbjct 1247 GCTCTAGAGAAGGCGGCACTTTCTGATGAATATTTTGTTAAGAGAAAGCTGTACCCAAAT 1306
Query 1238 GTTGATTTCTACTCCGGATTAAT-ATACAGGGCAATGGGATTTCCACCAGAGTTC-TTCA 1295
|||||||||||||| |||||||| | | |||||||||||| | ||| || | | ||||
Sbjct 1307 GTTGATTTCTACTCTGGATTAATCA-ATAGGGCAATGGGAATCCCATCA---T-CATTCA 1361
Query 1296 CGGTCTTATTCGCGATTCCTCGCATGGCTGGATACTTGTCGCATTGGAAAGAGTCGTTGG 1355
| | | | | || | || || |||||||||||||| || ||| ||||| || |
Sbjct 1362 CCG-C--AGT----AT-CA-CGTATCGCTGGATACTTGTCACACTGGCGTGAGTCTTTAG 1412
Query 1356 ATGATCCTGACACCAAGATCATGAGACCACAACAGGTGTACACAGGCGTGTGGCTGAGGC 1415
||||||||||||| |||||||||||||| |||||||| || || || | | || | ||||
Sbjct 1413 ATGATCCTGACACAAAGATCATGAGACCCCAACAGGTCTATACTGGAGCGGGGATAAGGC 1472
Query 1416 ATTAC-ACGCCAGTGAGAGAGAGAATTGTGACGGATGACTCTAAAGAGTCGGA-CAAATT 1473
||||| | | |||||||||| |||| | | | ||| || || | ||| || ||
Sbjct 1473 ATTACGA-GACAGTGAGAGAAAGAACCAAG-CTG-TGATTCG---GATTTGGATCAG-TT 1525
Query 1474 GGGTCAAGTCTCGACTTCAAATGCATCAAGAAGACGTTTGGCTGG 1518
||||||||| || | ||| |||||||||||||| |||| | ||||
Sbjct 1526 GGGTCAAGTTTCCATTTCGAATGCATCAAGAAGGCGTTAG-CTGG 1569
> AT2G42780.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: regulation of transcription; LOCATED IN:
integral to membrane, nucleus; EXPRESSED IN: 20 plant structures;
EXPRESSED DURING: 11 growth stages; CONTAINS InterPro
DOMAIN/s: RNA polymerase II transcription factor SIII, subunit
A (InterPro:IPR010684); Has 187 Blast hits to 186 proteins
in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi
- 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source:
NCBI BLink). | chr2:17800482-17802816 FORWARD LENGTH=1231
Length=1231
Score = 429 bits (232), Expect = 8e-119
Identities = 307/340 (90%), Gaps = 18/340 (5%)
Strand=Plus/Minus
Query 1846 TAGAAAACAAAGCACTTTATTAAATCATTATAGAAACCTTTGAAGATCTATTGTTACAAA 1905
||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||
Sbjct 1230 TAGAAAACAAAGCACTTTATTAAATCATTGTAAAAACTTTTGAAGATCTATTGTTACAAA 1171
Query 1906 ATAGGATATCATCAAGCTACAAAGTTTCAAAATTCGGAGTTCTTGAAAC------T---- 1955
|||||||||||||||| || |||||||||| |||||||||||||||| |
Sbjct 1170 CTAGGATATCATCAAGC--CAGAGTTTCAAAACTCGGAGTTCTTGAAACTTGAAGTAGCC 1113
Query 1956 -TG---ATGATACACTTGAAGAAAAATATTATCTGT-AAAAAGCTATATAAGTTACATTA 2010
|| |||||||||| ||||||||| || |||||| |||||||||||||||||||||||
Sbjct 1112 ATGTAAATGATACACTCGAAGAAAAA-ATGATCTGTAAAAAAGCTATATAAGTTACATTA 1054
Query 2011 CATGTTTTTGTCTGGTGGCTGCATTTTTTGAAGTTGAAGGAGCAGTCCCCGGAAGGCTGT 2070
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 1053 CATGTTTTTGTCTGGTGGCTGCATTTTTTGAAGTTGAAGGAGCAGTCCCAGGAAGGCCGT 994
Query 2071 TGATCCTCTTTGGAGGTAGCTTTTGTCCACCAGAAGGAATGCTTCTTGAAGTTGAAGTCG 2130
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 993 TGATCCTCCTTGGAGGTAGCTTTTGTCCACCAGAAGGAACGCTTCTTGAAGTTGAAGGCG 934
Query 2131 CATTCGCGGATAAGCCAGTCCTCTTTGGAGCAGAAATACT 2170
|||| ||||||||||||||||||||||||||||| |||||
Sbjct 933 CATTAGCGGATAAGCCAGTCCTCTTTGGAGCAGATATACT 894
Score = 132 bits (71), Expect = 2e-29
Identities = 78/81 (96%), Gaps = 1/81 (1%)
Strand=Plus/Minus
Query 2624 CTCTTCAACAGATCTAGTTTTGCCTTCTTCATGATGTTGCTCTTCACATTCCCAAGATTG 2683
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 718 CTCTTCAACAGATCTATTTTTGCCTTCTTCATGATGTTGCTCTTCACATGCCCAAGATTG 659
Query 2684 TAACCTGATGCACTATT-CCC 2703
||||||||||||||||| |||
Sbjct 658 TAACCTGATGCACTATTACCC 638
Score = 124 bits (67), Expect = 4e-27
Identities = 67/67 (100%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 2832 TTACCCCAAAATGGTCTTTTGCTTGGAGGAGCTTTCGAGCAGACCTTAGTTTGTCGACTT 2891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 TTACCCCAAAATGGTCTTTTGCTTGGAGGAGCTTTCGAGCAGACCTTAGTTTGTCGACTT 584
Query 2892 TGTTTCC 2898
|||||||
Sbjct 583 TGTTTCC 577
Score = 113 bits (61), Expect = 9e-24
Identities = 77/84 (92%), Gaps = 4/84 (5%)
Strand=Plus/Minus
Query 3022 CTTTCATTTTCGTCCTTGTAACGTTCTTTCAGTCGATCAACA-GCTTTCTTCTC-TTCTT 3079
|||||||||||||||||||||||||||||||||||| || || | || |||||| || ||
Sbjct 577 CTTTCATTTTCGTCCTTGTAACGTTCTTTCAGTCGACCACCAAG-TTCCTTCTCCTT-TT 520
Query 3080 GTTGCACAGCTATAACCTTCAACT 3103
||||||||||||||||||||||||
Sbjct 519 GTTGCACAGCTATAACCTTCAACT 496
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 156872030761
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5