BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483386
Length=2371
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42880.1 | Symbols: ATMPK20, MPK20 | MAP kinase 20 | chr2:17... 3598 0.0
> AT2G42880.1 | Symbols: ATMPK20, MPK20 | MAP kinase 20 | chr2:17840388-17844380
REVERSE LENGTH=2438
Length=2438
Score = 3598 bits (1948), Expect = 0.0
Identities = 2258/2398 (94%), Gaps = 59/2398 (2%)
Strand=Plus/Plus
Query 23 tctctctctctctctATCCCTTGTGTGTCGGTGATCAGATCTCGTGCCGACGAAAACGTG 82
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 50 TCTCTCTCTCTCTGTATCCCTTGTGTGTCGGTGATCAGATCTCGTGCCGACGAAAACGTG 109
Query 83 CGT-TAAAAGCAATGCTGTTCGCACTCAGCTTTCATCAATTGCTCGATTTATCTT-AATC 140
||| | ||||||||||||||||||||| ||| || |||||| ||||||||||||| || |
Sbjct 110 CGTCT-AAAGCAATGCTGTTCGCACTCTGCTATCTTCAATTCCTCGATTTATCTTGAA-C 167
Query 141 TGC---TG--T-TTGTTGATTCGATTTC------GG----TGGGTGAATTAGAGAGGTGA 184
||| || | |||||| ||||||||| || ||||||||||||||||||||
Sbjct 168 TGCGATTGTTTGTTGTTGTTTCGATTTCGTTGGGGGTAATTGGGTGAATTAGAGAGGTGA 227
Query 185 ATGAGAAATTCGCCTGCGATTCTGTCTCTGTCGGTGATCGATTGCCGGAGCAGAACCAGG 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 ATGAGAAATTCGCCTGCGATTCTGTCTCTGTCGGTGATCGATTGCCGGAGCAGAACCAGG 287
Query 245 TCGGATTCTAGCTTCGCCATTTGGAGTAGTGGTCGTTGGGGCCAATGCGGCTGATCTG-- 302
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 288 TCGGATTCTAGCTTCGCCATTTGGAGTAGTGGTCGATGGGGCCAATGCGGCTGATCTGAA 347
Query 303 -----A------------CAATTTAGATCGAATTCTAGGG-T-TT-TAATTCC-GGGTTT 341
| ||||| |||||||||||||||| | || ||||||| ||||||
Sbjct 348 TTTCTATTTCCCTCCCCCCAATTCAGATCGAATTCTAGGGTTCTTCTAATTCCTGGGTTT 407
Query 342 TT-GTCTGTGTTTCCAATTGAGTCATGATGCAGCAAGATAATCACAAAAAGAATAATCTG 400
|| |||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 408 TTAGTCTGTGTTT-CAATTGAGTCACGATGCAGCAAGATAATCGCAAAAAGAATAATCTG 466
Query 401 GAGATGGAGTTCTTCTCTGACTATGGCGATGCCAATAGATTTAAAATTCAAGAAGTTATT 460
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 467 GAGATGGAGTTCTTTTCTGACTATGGCGATGCCAATAGATTTAAAGTTCAAGAAGTTATT 526
Query 461 GGAAAAGGCAGTTATGGAGTTGTTTGCTCAGCAATAGATACTCTTACGGGTGAGAAAGTG 520
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 527 GGAAAAGGCAGTTATGGAGTTGTTTGCTCAGCTATAGACACTCTTACGGGTGAGAAAGTC 586
Query 521 GCGATAAAGAAAATACATGATATTTTTGAGCATATATCTGATGCTGCGAGGATTCTACGT 580
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 587 GCGATAAAGAAAATTCATGATATTTTTGAGCATATTTCTGATGCTGCGAGGATTCTACGT 646
Query 581 GAGATAAAACTGCTTAGACTCTTAAGGCATCCAGATATAGTTGAAATTAAGCACATTATG 640
||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 647 GAGATTAAACTTCTTAGACTCCTAAGGCATCCAGATATAGTTGAAATTAAGCACATTATG 706
Query 641 CTTCCTCCTTCACGAAGAGAATTCAAAGATATTTATGTTGTCTTTGAGCTCATGGAATCG 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 CTTCCTCCTTCACGAAGAGAATTCAAAGATATTTATGTTGTCTTTGAGCTCATGGAATCG 766
Query 701 GATCTTCATCAAGTTATTAAAGCCAATGATGATTTGACTAGAGAGCATTACCAGTTTTTC 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 GATCTTCATCAAGTTATTAAAGCCAATGATGATTTGACTAGAGAGCATTACCAGTTTTTC 826
Query 761 CTCTATCAGTTGCTGCGTGCACTGAAGTACATTCACACAGCTAATGTCTACCACCGAGAC 820
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 CTGTATCAGTTATTGCGTGCACTGAAGTACATTCACACAGCTAATGTCTACCACCGAGAC 886
Query 821 CTGAAACCAAAGAACATACTGGCAAATGCAAACTGTAAACTTAAGATTTGTGATTTTGGA 880
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 887 CTGAAACCAAAGAACATATTGGCAAATGCAAACTGTAAACTTAAGATTTGTGATTTTGGA 946
Query 881 TTGGCAAGAGTTGCATTCAATGATACGCCCACAACCATCTTCTGGACAGACTACGTTGCT 940
|||||||| ||||||||||||||||| |||||||| ||||||||||| ||||| ||||||
Sbjct 947 TTGGCAAGGGTTGCATTCAATGATACCCCCACAACAATCTTCTGGACTGACTATGTTGCT 1006
Query 941 ACCAGATGGTATAGAGCTCCAGAGCTTTGTGGATCTTTTTACTCTAAGTATACACCCGCA 1000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 ACCAGATGGTATAGAGCTCCAGAGCTTTGTGGATCTTTTTACTCTAAGTATACACCCGCA 1066
Query 1001 ATTGACATCTGGAGTATAGGCTGCATTTTTGCGGAGGTATTGATGGGAAAACCACTTTTC 1060
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1067 ATTGACATCTGGAGTATAGGCTGCATTTTTGCGGAGGTGTTGATGGGTAAACCACTTTTC 1126
Query 1061 CCTGGAAAGAATGTGGTTCATCAGCTGGATCTTATGACTGATCTGCTAGGGACACCTTCC 1120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1127 CCTGGAAAGAATGTGGTTCACCAGCTGGATCTTATGACTGATCTGCTAGGGACACCTTCC 1186
Query 1121 CTGGACACCATCTCCCGGGTGAGGAATGAGAAGGCAAGGAGGTACTTAACAAGCATGAGG 1180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1187 CTGGACACCATCTCACGGGTGAGGAATGAGAAGGCAAGGAGGTACTTAACAAGCATGAGG 1246
Query 1181 AAAAAGCCACCCATTCCGTTTGCTCAGAAATTCCCCAATGCAGATCCTTTGTCTCTGAAG 1240
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1247 AAAAAGCCACCCATTCCGTTTGCACAGAAATTCCCAAATGCAGATCCTTTGTCTCTGAAG 1306
Query 1241 TTGTTGGAGAGGCTTCTTGCTTTTGATCCAAAAGACCGGCCAACTGCTGAAGAGGCACTT 1300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1307 TTGTTGGAGAGGCTTCTTGCTTTTGATCCAAAAGACCGGCCAACTGCTGAAGAGGCACTT 1366
Query 1301 GCTGATCCATATTTTAAGGGATTGGCAAAAGTCGAAAGGGAGCCTTCATGTCAACCCATC 1360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1367 GCTGATCCATATTTTAAGGGATTGGCAAAAGTGGAAAGGGAGCCTTCATGTCAACCCATC 1426
Query 1361 ACGAAGATGGAATTTGAATTCGAGAGAAGAAAAGTCACTAAAGAAGATATAAGAGAGCTA 1420
||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1427 ACGAAGATGGAATTTGAGTTCGAGAGAAGAAAGGTCACTAAAGAGGATATAAGAGAGCTA 1486
Query 1421 ATTTCTAGGGAGATACTTGAGTACCATCCTCAGCTCCTTAAAGA-CTACATGAACGGGGC 1479
|||||||||||||||||||||||||| |||||||| |||||||| | | |||||||||||
Sbjct 1487 ATTTCTAGGGAGATACTTGAGTACCACCCTCAGCTGCTTAAAGATC-ATATGAACGGGGC 1545
Query 1480 TGATAAAGCCAGTTTTCTTTACCCAAGTGCTGTTGATCAATTTAGAAGACAATTTGCGCA 1539
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1546 TGATAAAGCCAGTTTTCTCTACCCAAGTGCTGTTGATCAATTTAGAAGACAATTTGCGCA 1605
Query 1540 TCTTGAAGAAAACAGTGGTAAAACCGTCCCTGTGGCGCCTCTAGAAAGGAAACATGCCTC 1599
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 1606 TCTTGAAGAAAACAGTGGTAAAACCGGCCCTGTGGCACCTCTAGAAAGGAAACATGCCTC 1665
Query 1600 TCTTCCCAGATCAACAGTCATACACTCAACCGCAGTAGCCCGAGGAGGACAACCAAAGCT 1659
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1666 TCTTCCCAGATCAACGGTCATACACTCAACCGCAGTAGCACGAGGAGGACAACCAAAACT 1725
Query 1660 TATGAATAACACAAACACATTGAACCCTGAAACTACTCAAAACATTCCTTTTAATCATGC 1719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1726 TATGAATAACACAAACACATTGAACCCTGAAACTACTCAAAACATTCCTTTTAATCATGC 1785
Query 1720 AACATTACAAGCACAACAAAGAAACCTCTCAGCCGCCAAACCAAGCACATTCATGGGCCC 1779
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1786 AACAATACAAGCACAACAAAGAAACCTCTCAGCAGCCAAACCAAGCACATTCATGGGCCC 1845
Query 1780 GGTCGCGCCTTTCGACAATGGCAGAATCAGCAGAGATGCATACGACCCGAGATCATTCAT 1839
||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1846 GGTTGCACCTTTCGACAATGGCAGAATCAGCAGAGATGCATATGACCCGAGATCATTCAT 1905
Query 1840 CCGGAGCACTAATCTCCCCTTTGCACAACAGTCAGCTGCAACAGTCGCCATGGGAAAGCA 1899
|||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||
Sbjct 1906 CCGGAGCACTAATCTCCCCTTTTCACAACAATCTGCTGCAACAGTCGCCATGGGAAAGCA 1965
Query 1900 GCAAGAGAGAAGAACAACTATGGAGCCTGAGAAGCAGACAAGACAAATATCTCAGTATAA 1959
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1966 GCAAGAGAGAAGAACAACTATGGAGCCTGAGAAGCAGGCAAGACAAATATCTCAGTATAA 2025
Query 1960 TAGATACGCACCAGATGTAGCCATCAACATAGACAACAACCCGTTTATCATGGCTAGAAC 2019
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2026 TAGATATGCACCAGATGTAGCCATCAACATAGACAACAACCCGTTTATCATGGCTAGAAC 2085
Query 2020 GGGAATGAACAAAGCCGAAAACATCAGCGACCGGATCATAATCGATACAAATCTTTTACA 2079
||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 2086 GGGAATGAACAAAGCCGAAAACATCAGTGACCGGATCATAATCGACACAAATCTGTTACA 2145
Query 2080 AGCAACCGCCGGAATAGGAGTTGCAGCGGCAGCTGCAGTAGCTGCTCCTGGTGGTTCTGC 2139
||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 2146 GGCAACTGCCGGAATAGGAGTCGCAGCGGCAGCTGCAGCAGCTGCTCCTGGTGGTTCTGC 2205
Query 2140 TCACCGGAAAGTTGGAGCTGTTCGGTACGGTATGTCAAAGATGTACTAGT-CTCCAACTA 2198
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 2206 TCACCGGAAAGTTGGAGCTGTTCGGTACGGTATGTCAAAGATGTACTAGTTCTCCACCTA 2265
Query 2199 AGCGGGGCTTTGATCACACGGAACATCGTATGTTTCAA-CTTCATGTCaaaaaagaaaat 2257
||| ||||||| ||||||| |||||| ||||||||| | |||||||||| ||||||||||
Sbjct 2266 AGCTGGGCTTTCATCACACAGAACATTGTATGTTTCCATCTTCATGTCATAAAAGAAAAT 2325
Query 2258 tgtctatgatacaaaaccatatgagcaaaaaatgttttaaaaaaaaaTTAATGTTGATCC 2317
||||||||| ||||||||||||||||||||||| |||| | |||| || |||||
Sbjct 2326 TGTCTATGACACAAAACCATATGAGCAAAAAATATTTTTTTTATTAATT---GT-GATCC 2381
Query 2318 ATCATTTGttt-tttt--CTATTTCCGACAGATAAATAAATGGATGTTA-ACTTCTGG 2371
||||||||||| |||| ||||| |||||| |||||||||||||||||| | ||||||
Sbjct 2382 ATCATTTGTTTGTTTTTTCTATT-CCGACAAATAAATAAATGGATGTTAGA-TTCTGG 2437
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117720278025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5