BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483390
Length=905
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42900.1 | Symbols: | Plant basic secretory protein (BSP) f... 833 0.0
> AT2G42900.1 | Symbols: | Plant basic secretory protein (BSP)
family protein | chr2:17854557-17855481 FORWARD LENGTH=925
Length=925
Score = 833 bits (451), Expect = 0.0
Identities = 547/592 (92%), Gaps = 11/592 (2%)
Strand=Plus/Plus
Query 1 TACAAAACCGTTACACATCTCTCTCTATGTAGACATCTATCCATGGTTTCAATGGCGGAT 60
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 TACAAAACCGTTACACGTCTCTCTCTATGTAGACATCTATCCATGGTTTCAATGACGGAT 60
Query 61 CAGACTCTTCTACAACCTTTCCTAGCCAAACCCACCACCAAAGGCTTAGCATCGGAATCG 120
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 CAGACTCTTCTTCAACCTTTCCTAGCCAAACCCACCACCAAAGGCTTAGCAACGGAATCG 120
Query 121 GATTCAGGTATTATTCTGCGGCTTTTCTCTGTACTTCTCGTCGGAGAAATCTCTTTGTGG 180
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 121 GATTCAGGTATTATTCTGCGGCTTTTCTCTATACTTCTCGTCGGAGCAATCTCTTTGTGG 180
Query 181 GTAAACCATGAGGCTTCAAAAGGTTTTTCTATAAGTATCATCAACGAGGCTAAAGATTCT 240
| ||||||||||||||||||||| || || |||||||||||||| || ||||||||||||
Sbjct 181 GCAAACCATGAGGCTTCAAAAGGCTTCTCCATAAGTATCATCAATGATGCTAAAGATTCT 240
Query 241 CCTTCTGGTAAACA-ATTCGCCCTTTTCTTTGAATCTGAAGTTACTGCAGTGCGGATTTT 299
||||| |||||| | ||||||||||||||| |||||||| | ||| ||||||||||| ||
Sbjct 241 CCTTCCGGTAAA-AGATTCGCCCTTTTCTTCGAATCTGATGATACGGCAGTGCGGATATT 299
Query 300 GCTCGATACGAGCTTCTTTGTGGAGAGGTTTCTCTATGAGGGTGTTCCTCATCGTCTCCG 359
||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 300 GCTCGATGCAAGCTTCTTTGTGGAGAGGTTTCTCTACGAGGGTGTTCCTCATCGTCTCCG 359
Query 360 GAAGCCTGTAAACCATGTTACCGTCCGATTCTGTGGAAACAGCAGTGATAGAGTAGATAG 419
|||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 360 TAAGCCTGTAAACCACGTTACCGTCCAATTCTGTGGAAACAGTAGTGATAGAGTAGATAG 419
Query 420 GTTCTCTGTAACTTCAGGTGCAAGTCATGGAGAGTATGTGATCAGATTAAGCTCATCTTT 479
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 420 GTTCTCGGTAACTTCAGGTGCAAGTCATGGAGAGTATGTGATCAGATTAAGCCCATCTCT 479
Query 480 AATGGAAAGAAGTAAGTTTAGCAACGCCGTGGAATCTGCATTGCGACGTTCTATGGTTAG 539
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CACGGAAAGAAAAAAGTTTAGCAACGCCGTGGAATCTGCATTGCGACGTTCTATGGTTAG 539
Query 540 GATATGGGCCATATGGCTATGGGGAGACGAGTCCGGAGCTCCGCCGGAGCTT 591
| || || ||||||||||||||||||| |||||| |||||||||||
Sbjct 540 -A-AT-----AT--GGCTATGGGGAGACGAGTCAGGAGCTTCGCCGGAGCTT 582
Score = 442 bits (239), Expect = 3e-123
Identities = 292/316 (92%), Gaps = 10/316 (3%)
Strand=Plus/Plus
Query 592 AGCCGAAAACGACGTCACTTTGAGAGGTTGGGTGGGCATTGGAAGGATAAGGAGTTTGCT 651
||||||||||||||||||||||| | ||| |||||| ||||||||||||||||
Sbjct 616 AGCCGAAAACGACGTCACTTTGAAAAGTTTGGTGGGAATTGGAAGGATAAGGA------A 669
Query 652 AAGTCTGTGTCTGTGGTTAGCTTCTTGGATTACTGTGAACGACGTAGCGAAGGG-TTCAT 710
|||||||||| |||||||||||| ||||||||||||||||||||||||| |||| |||||
Sbjct 670 AAGTCTGTGTATGTGGTTAGCTTGTTGGATTACTGTGAACGACGTAGCG-AGGGTTTCAT 728
Query 711 CCGACGGTTGAACCATGGGATGAGACTTAGGTGGGATGATCGGACGGTGGATCTTGCGTC 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 729 CCGACGGTTGAACCATGGGATGAGACTTAGGTGGGATGATCGGACGGTGGATCTTGCTTC 788
Query 771 GAGTGGTGCGTGTGGTTCACGCAAGGATGTGTGGCGTGAGCTTAAGATGGACGACAGTGG 830
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 789 GAGTGGTGCGTGTGGTTCACGCAAGGATGTGTTGCGTGAGCTTAAGATGGACGACAGTGG 848
Query 831 AATGATAATTGAGAGACGAACATGAT-TGGTTCTCATGCTGTCTTATTGTAGCACACATG 889
| |||||||||||||||||||||||| || ||||| ||||| | ||||||||||||||||
Sbjct 849 ATTGATAATTGAGAGACGAACATGATATG-TTCTCGTGCTGCCATATTGTAGCACACATG 907
Query 890 GCTCCACGTCATCATT 905
|||||||||||| |||
Sbjct 908 GCTCCACGTCATTATT 923
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44206049360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5