BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483391
Length=1313
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42910.1 | Symbols: | Phosphoribosyltransferase family prot... 1912 0.0
> AT2G42910.1 | Symbols: | Phosphoribosyltransferase family protein
| chr2:17856268-17858597 FORWARD LENGTH=1345
Length=1345
Score = 1912 bits (1035), Expect = 0.0
Identities = 1250/1347 (93%), Gaps = 41/1347 (3%)
Strand=Plus/Plus
Query 1 AAGGAATCAAAATTGTCAGCCGAACaa-aaaaaaaagaa---tttttcagaaaaat-aaa 55
||||||||||||||||||||||||||| |||||||| || ||||||||||||| |||
Sbjct 1 AAGGAATCAAAATTGTCAGCCGAACAACAAAAAAAACAAGGGCTTTTCAGAAAAATAAAA 60
Query 56 aacctttaaaccctttttttttGTTTTGTGTATCCGATTCCGTAGCAAACACATTCGGAC 115
||||||||||||| ||| |||||||||||||||||||| |||| ||||||||||
Sbjct 61 AACCTTTAAACCC------TTT-TTTTGTGTATCCGATTCCGTCGCAAGTACATTCGGAC 113
Query 116 TCTTTCACGGCGTCAATGTCTGAGAACGCAGCCAACAACATCATGGAGACCAAGATTTGT 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 114 TCTTTCACGGCGTCAATGTCTGAGAACGCAGCCAACAACATCATGGAGACCAAGATTTGT 173
Query 176 ACCGACGCCATCGTGTCTGAATTACAGAAGAAGAAAGTTCATCTCTTTTACTGCTTAGAG 235
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 ACAGACGCCATCGTGTCTGAATTACAGAAGAAGAAAGTTCATCTCTTTTACTGCTTAGAG 233
Query 236 TGTGAAGAACTTGCTCGTAACATCGCCGCTGAATCTGATCACATCACTCTTCAATCCATC 295
|| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 234 TGCGAAGAACTTGCTCGCAACATCGCCGCTGAATCTGATCACATCACTCTCCAATCCATC 293
Query 296 AACTGGAGGAGTTTTGCTGATGGATTCCCTAATCTGTTTATTAACAACGCACATGAAATC 355
||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| |||
Sbjct 294 AACTGGAGGAGTTTTGCTGATGGATTCCCGAATCTATTTATCAACAACGCACATGATATC 353
Query 356 CGAGGACAGCATGTTGCCTTCCTTGCTTCATTCAGTTCTCCTGCGGTTATCTTTGAGCAG 415
||||| ||||| ||||| |||||||||||||||||||| ||||| || ||||||||||||
Sbjct 354 CGAGGCCAGCACGTTGCGTTCCTTGCTTCATTCAGTTCCCCTGCTGTCATCTTTGAGCAG 413
Query 416 ATCTCTGTCATTTACTTGCTTCCTCGCTTGTTTGTCGCCTCCTTCACTTTAGTGTTGCCT 475
|||||||||||||||||||| ||||| |||||||| || ||||||||||| |||||||||
Sbjct 414 ATCTCTGTCATTTACTTGCTCCCTCGATTGTTTGTTGCGTCCTTCACTTTGGTGTTGCCT 473
Query 476 TTTTTCCCCACTGGCTCCTTTGAGAGAATGGAAGAGGAAGGAGATGTAGCAACTGCTTTT 535
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 TTCTTCCCCACTGGCTCCTTTGAGAGAATGGAAGAGGAAGGAGATGTAGCAACTGCTTTT 533
Query 536 ACCATGGCAAGGATTGTCTCTAATATCCCCATTTCACGTGGTGGTCCGACTAGTGTTGTC 595
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 534 ACCATGGCAAGGATTGTCTCTAATATCCCCATTTCACGCGGTGGTCCGACTAGTGTTGTC 593
Query 596 ATATATGACATTCACGCCCTGCAGGAAAGGTTTTACTTTGCTGACCAGGTTCTTCCTTTG 655
|| |||||||||||||| |||||||||||||||||||||| || |||||||||||||||
Sbjct 594 ATCTATGACATTCACGCTTTGCAGGAAAGGTTTTACTTTGCCGATCAGGTTCTTCCTTTG 653
Query 656 TTTGAGACTGGAATCCCGTTGTTGACCAAACGCCTTCAACAGCTTCCCGAAACTGAGAAA 715
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 654 TTTGAGACTGGAATCCCGTTGTTGACTAAACGCCTTCAACAGCTTCCTGAAACTGAGAAA 713
Query 716 GTCATAGTTGCATTTCCAGATGATGGAGCCTGGAAGCGTTTCCACAAGCTGTTGGATCAG 775
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 714 GTCATAGTTGCATTTCCTGATGATGGAGCCTGGAAGCGTTTCCATAAGCTGTTGGATCAT 773
Query 776 TATCCCACGGTTGTGTGTACAAAGGTTCGTGAAGGCGACAAGAGAATAGTTAGGCTGAAG 835
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 774 TATCCCACGGTTGTGTGTACAAAGGTTCGTGAAGGCGATAAGAGAATAGTCAGGCTGAAG 833
Query 836 GAAGGAAACCCCGCTGGTTGTCACGTTGTTATCGTCGATGATCTTGTTCAGTCTGGGGGT 895
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 834 GAAGGAAACCCTGCTGGTTGTCACGTTGTTATCGTGGATGATCTTGTGCAGTCTGGGGGT 893
Query 896 ACACTCATCGAATGCCAGAAAGTATTGGCAGCTCATGGAGCCGCGAAGGTGAGTGCTTAT 955
|||||||| ||||||||||||||||||||||| |||||||| | ||||||||||||||||
Sbjct 894 ACACTCATTGAATGCCAGAAAGTATTGGCAGCGCATGGAGCTGTGAAGGTGAGTGCTTAT 953
Query 956 GTAACACATGGTGTCTTCCCAAAGAGCTCGTGGGAGCGTTTCACGCACAAGAACAACGGA 1015
||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 954 GTAACTCATGGTGTCTTCCCAAAGAGCTCGTGGGAGCGTTTCACCCACAAGAAGAACGGA 1013
Query 1016 TTGGAAGAAGCGTTTGCATACTTCTGGATCACGGATTCTTGTCCACAGACGGTTAAGGCC 1075
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 TTAGAAGAAGCGTTTGCTTACTTCTGGATCACGGATTCTTGTCCACAGACGGTTAAGGCC 1073
Query 1076 ATAGGAAACAAAGCTCCTTTCGAAGTCTTGAGCCTCGCCGGATCCATTGCTGATGCTCTG 1135
|| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1074 ATCGGAAACAAGGCTCCTTTCGAAGTCTTGAGCCTCGCTGGATCCATTGCTGATGCTCTG 1133
Query 1136 CAGATTTGAAGCAATAGAGATAAAGCCTGGTTCTTTGCT-G----G---TTTTGGT---- 1183
||||||||||||| ||||||||||||||||||||||||| | | |||||||
Sbjct 1134 CAGATTTGAAGCAGTAGAGATAAAGCCTGGTTCTTTGCTCGTTTTGGACTTTTGGTGGTT 1193
Query 1184 --A--CTCTTAAGAGAT---C-----A--A--ATT-ATGAAATAATCACATCACTTTTGC 1226
| |||||||||||| | | | ||| |||||||||||| |||||||||||
Sbjct 1194 TTATACTCTTAAGAGATGTGCTTTGGATGATCATTTATGAAATAATCATATCACTTTTGC 1253
Query 1227 TGAAATGACTAGACAGATTGTTGAAACCTTGTACTCTGTTCTTGTTGATTGATCTTCTTT 1286
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 TGAAATAACTAGACAGATTGTTGAAACCTTGTACTCTGTTCTTGTTGATTGATCTTCTTT 1313
Query 1287 TGCAATGAATTGAATCGTTAAGTTCAG 1313
|||||||||||||||||||||||||||
Sbjct 1314 TGCAATGAATTGAATCGTTAAGTTCAG 1340
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64608101415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5