BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483392
Length=1678
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42920.1 | Symbols: | Pentatricopeptide repeat (PPR-like) s... 2556 0.0
> AT2G42920.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr2:17858698-17863466 FORWARD LENGTH=4026
Length=4026
Score = 2556 bits (1384), Expect = 0.0
Identities = 1581/1679 (94%), Gaps = 2/1679 (0%)
Strand=Plus/Plus
Query 1 AAAAATGTCTCCGACGATCTTATGCTTCTCCGGTGTGACGGTGCCGGCGATTCCGTCATC 60
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 4 AAAAATGTCTCCGACGATCTTATCCTTCTCCGGTGTGACGGTGCCGGCGATGCCGTCATC 63
Query 61 AAGTTTCGTCTCCGGAAACACTTGTCTCCGGTTGATAGACACACAATGTAGTACGATGAG 120
| ||| | ||||||| ||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 64 AGGTTCCCTCTCCGGCAACACTTATCTCCGATTGATAGACACACAATGTAGTACGATGAG 123
Query 121 AGAACTTAAGCAAATCCACGCCAATCTCATCAAAACCGGTTTAATTTCCGATACTGTTGC 180
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 124 AGAACTTAAGCAAATCCACGCCAGTCTCATCAAAACCGGTTTAATTTCCGATACTGTTAC 183
Query 181 CGCGAGTCGTGTCCTCGCCTTCTGCTGTGCGTCTCCGTCAGATAGGAATTACGCTTATTT 240
|||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 184 CGCGAGCCGTGTCCTCGCCTTCTGCTGTGCGTCTCCGTCAGACATGAATTACGCTTATTT 243
Query 241 GGTATTCACAAGGATCAATCACAAAAACCCATTTGTGTGGAACACTATAATCCGTGGTTT 300
||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 244 GGTATTCACTAGGATCAATCACAAGAACCCATTTGTCTGGAACACTATAATCCGTGGTTT 303
Query 301 CTCACGTAGCTCGTTTCCGGAGATGGCGATTTCGATTTTCATTGATATGTTGTGTTCTTC 360
|||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||
Sbjct 304 CTCACGGAGCTCGTTTCCAGAGATGGCTATTTCGATTTTCATTGACATGTTGTGTTCTTC 363
Query 361 TCCGTCTGTGAAGCCGCAGAGGCTGACTTATCCTTCGGTATTTAAAGCTTATGCTAGTCT 420
||||||||||||||||||||| |||||||||||||||| || |||||||||| ||| ||
Sbjct 364 TCCGTCTGTGAAGCCGCAGAGATTGACTTATCCTTCGGTGTTCAAAGCTTATGGTAGACT 423
Query 421 TGGGCTAGCTCGTGATGGGAGGCAGTTGCACGGGAGGGTTATTAAAGAAGGACTTGAAGA 480
||| | |||||||||||||||||| || || |||| |||||||||||| |||||||||||
Sbjct 424 TGGCCAAGCTCGTGATGGGAGGCAATTACATGGGATGGTTATTAAAGAGGGACTTGAAGA 483
Query 481 CGACTC-TTTCATACGGAATACGATGTTGCATATGTACGTGACTTGTGGATGTTTGGTTG 539
|||||| ||| |||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 484 CGACTCGTTT-ATACGGAATACGATGTTGCATATGTACGTGACTTGTGGGTGTTTGATTG 542
Query 540 AAGCTTGGAGACTCTTTGTGGGGATGATGGGTTTTGATGTTGTTGCTTGGAATTCGATGA 599
||||||||||| ||||| |||||||||| |||||||||||||||||||||||||| ||||
Sbjct 543 AAGCTTGGAGAATCTTTCTGGGGATGATAGGTTTTGATGTTGTTGCTTGGAATTCAATGA 602
Query 600 TTATGGGTCTTGCGAAATGCGGGTTGATTGATCAGGCGCAGAAACTGTTTGATGAAATGC 659
|||||||| |||||||||| || |||||||||||||||||||| ||||||||||||||||
Sbjct 603 TTATGGGTTTTGCGAAATGTGGATTGATTGATCAGGCGCAGAACCTGTTTGATGAAATGC 662
Query 660 CGCAGAGGAATGGAGTTTCTTGGAATTCGATGATCAGTGGGTTTGTGAGGAATGGTAGAT 719
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 663 CGCAGAGAAATGGAGTTTCTTGGAATTCGATGATTAGTGGGTTTGTGAGGAATGGTAGAT 722
Query 720 TTAAGGATGCGTTGGATATGTTTCGAGAAATGCAGGAGAGAGGTGTGAAACCTGATGGGT 779
|||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||
Sbjct 723 TTAAGGATGCGTTGGATATGTTTCGAGAGATGCAGGAGAAAGATGTGAAACCTGATGGGT 782
Query 780 TTACAATGGTGAGTCTGTTGAATGCTTGTGCCTACCTTGGAGCAAGTGAGCAAGGGAGAT 839
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 783 TTACAATGGTGAGTCTGTTGAATGCTTGTGCGTACCTTGGAGCAAGTGAGCAAGGGAGAT 842
Query 840 GGATACATAAGTATATAGTGAGGAATCGATTTGAATTGAATAGTATAGTTATTACAGCAC 899
|||||||| |||| |||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 843 GGATACATGAGTACATAGTGAGGAATCGGTTTGAATTGAATAGTATAGTTGTTACAGCAC 902
Query 900 TCATAGATATGTACTGTAAGTGTGGGTGCTTTGAGGAAGGTCTAAAGGTGTTTGAGTGTG 959
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 903 TCATAGATATGTACTGTAAGTGTGGGTGCATTGAGGAAGGTCTAAATGTGTTTGAGTGTG 962
Query 960 CTCGTAAGATGCAATTATCGTGCTGGAATTCGATGATTCTTGGTCTAGCTAATAATGGAT 1019
||| ||||| ||| |||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 963 CTCCTAAGAAGCAGTTATCGTGTTGGAATTCGATGATTCTTGGTCTAGCTAATAACGGAT 1022
Query 1020 GCGAGGAAAGGGCCATGGATTTGTTCTTGGAGTTAGAGCGTTCTGGCTTGGAGCCAGATT 1079
|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 1023 TCGAGGAAAGGGCCATGGATTTGTTCTCGGAGTTAGAGCGTTCTGGCTTGGAACCAGATT 1082
Query 1080 CAGTCAGCTTCATCGGTGTTTTAACAGCTTGTGCTCACTCCGGGGAAGTACATAAAGCTG 1139
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1083 CAGTCAGCTTCATTGGTGTTTTAACAGCTTGTGCTCACTCCGGGGAAGTACATAGAGCTG 1142
Query 1140 GTGAATTTTTCAGATTGATGAGAGAAAAATATATGATTGAGCCATCAATAAAACACTATA 1199
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1143 ATGAATTTTTCAGATTGATGAAAGAAAAATATATGATTGAGCCATCAATAAAACACTATA 1202
Query 1200 CTTGCATGGTTAATGTGCTGGGGGGAGCAGGGCTCCTCGATGAAGCAGAAGCATTGATAA 1259
||| ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct 1203 CTTTAATGGTTAATGTGCTGGGTGGAGCGGGGCTCCTCGAAGAAGCAGAAGCATTGATAA 1262
Query 1260 AGAAGATGCCGGTGGAAGGAGACACTATTATATGGAGTTCTTTGCTTGCAGCTTGCAGAA 1319
|||| ||||||||||||| ||||||| |||||||||||||||||||| | || ||||| |
Sbjct 1263 AGAATATGCCGGTGGAAGAAGACACTGTTATATGGAGTTCTTTGCTTTCTGCCTGCAGGA 1322
Query 1320 AAAACGGTAATGTTGAGATGGCTAAACGCGCAGCAAACTGTTTGAAGAATCTGGATCCAG 1379
||| |||||||||||||||||||||||| |||||||| ||||||||||| || |||||||
Sbjct 1323 AAATCGGTAATGTTGAGATGGCTAAACGAGCAGCAAAATGTTTGAAGAAGCTCGATCCAG 1382
Query 1380 ATGAAACTTGTGGTTATGTGCTCATGTCTAATGCTTATGCTTCTTATGGCTTGTTCGAAG 1439
||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1383 ATGAAACGTGTGGTTATGTTCTCTTGTCTAATGCTTATGCTTCTTATGGCTTGTTCGAAG 1442
Query 1440 AGGCTGTTGAGCAGAGGCTTTTGATGAAGGAAAGACAAATGGAGAAAGAAGTTGGCTGCA 1499
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1443 AGGCAGTTGAGCAGAGGCTTTTGATGAAGGAAAGACAAATGGAGAAAGAAGTTGGCTGCA 1502
Query 1500 GTTCGATTGAAGTGGATTTTGAAGTTCATGAGTTTGTATCTTGTGGGAAAAAACATCCTA 1559
||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||
Sbjct 1503 GTTCGATTGAAGTGGATTTTGAAGTTCATGAGTTTATATCTTGTGGGGGAACGCATCCTA 1562
Query 1560 AATCCACAGAGATTTACAGTTTACTTGGTATCTTAAACTGGGATGTCTCTACAATTAAAT 1619
||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1563 AATCCGCAGAGATTTACAGTTTACTCGATATCTTAAACTGGGATGTCTCTACAATTAAAT 1622
Query 1620 CAGGTTTCGCTGAATTGTTTGATGCTACAACTAGGATTGGTTTCACTTATCTGGCAGAG 1678
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1623 CAGGTTTCGCTGAATTGTTTGATGCTACAACTAGGATTGGTTTCACTTATCTGGCAGAG 1681
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82931300340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5