BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483394
Length=1175
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42940.1 | Symbols: | Predicted AT-hook DNA-binding family ... 1794 0.0
AT2G42920.1 | Symbols: | Pentatricopeptide repeat (PPR-like) s... 1543 0.0
> AT2G42940.1 | Symbols: | Predicted AT-hook DNA-binding family
protein | chr2:17862254-17863456 REVERSE LENGTH=1203
Length=1203
Score = 1794 bits (971), Expect = 0.0
Identities = 1131/1201 (94%), Gaps = 39/1201 (3%)
Strand=Plus/Plus
Query 1 TTGTTAACTATTAATCACAA-TTTTGGTGACAACTTAACCATCTCCTACTCTTCACAATC 59
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 12 TTGTTAACTATTAATCACAATTTTTGGTGACAACTTAACCATCTCCTACTCCTCACAATC 71
Query 60 ATTCTTTTGGTGTCTCTACCATTTAATAATTCACCAAAACCTCCTTACTTAAACTCACAA 119
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 72 ATTCTTTTGGTGTCTCTACCATTTAATAATTCACCAAAATCTCCTTACTTAAACTCACAA 131
Query 120 ACTCCTCACAAATTTTCTGAATCTTTCACTTGAACATAT-A-AACATTCATAACAATGGC 177
|||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||
Sbjct 132 ACTCCTCACAAATTTTCTGAATCTTTCAGTTGAACATATAACAACATTCATAACAATGGC 191
Query 178 TGGAGGCACAGCTCTAACCCCAACCTCTGTAGGATCCAAGTCAGTTCCAATGAGGAACCA 237
|||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 192 TGGAGGTACAGCTCTAACTCCAACCTCTGTAGGATCCAAGTCTGTTCCAATGAGGAACCA 251
Query 238 TGAAGCAGCAGAGAGAGGCAATaacaacaacaacaacaacaacCTGAAAGCATTACCCAA 297
||||||| |||||||||| |||| || |||||||||||||| ||||||||||||
Sbjct 252 TGAAGCAACAGAGAGAGG------CAAC-AC--CAACAACAACCTGAGAGCATTACCCAA 302
Query 298 AGCTGTCCAACCGGTTTCATCAATCGAAGGAGAGATGGCTAAGAGGCCACGTGGCAGACC 357
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 AGCCGTCCAACCGGTTTCATCAATCGAAGGAGAGATGGCTAAGAGGCCACGTGGCAGACC 362
Query 358 CGCTGGCTCCAAGAACAAACCCAAACCACCAATCATTGTGACTCACGACAGTCCCAATTC 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 363 CGCTGGCTCCAAGAACAAACCCAAACCACCAATCATTGTGACTCACGACAGTCCAAATTC 422
Query 418 CCTCAGAGCTAACGCCGTTGAGATCAGCTCAGGTTGTGACATCTGTGAGACTTTATCCGA 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 423 CCTCAGAGCTAACGCCGTTGAGATCAGCTCAGGTTGTGACATCTGTGAGACTTTATCGGA 482
Query 478 TTTCGCAAGAAGGAAACAGAGAGGTCTCTGCATACTCAGTGCCAATGGTTGTGTCACCAA 537
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 483 TTTTGCAAGAAGGAAACAGAGAGGTCTCTGCATTCTCAGTGCCAATGGTTGTGTCACCAA 542
Query 538 TGTGACATTAAGGCAACCAGCTTCTTCAGGAGCAATTGTGACATTACACGGACGTTACGA 597
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 543 TGTGACATTAAGGCAACCAGCTTCATCAGGAGCAATTGTCACATTACACGGACGTTACGA 602
Query 598 GATCCTCTCATTGCTTGGATCAATCTTGCCTCCACCAGCACCACTTGGAATAACTGGTCT 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 GATCCTCTCATTGCTTGGATCAATCTTGCCTCCACCAGCACCACTTGGAATAACTGGTCT 662
Query 658 GACCATTTACTTAGCCGGACCTCAAGGACAAGTTGTTGGTGGTGGAGTGGTTGGTGGGCT 717
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 663 GACCATTTACTTAGCCGGACCTCAAGGACAGGTTGTTGGTGGAGGAGTGGTTGGTGGGCT 722
Query 718 AATCGCGTCTGGTCCTGTTGTTCTCATGGCTGCATCTTTCATGAATGCTGTTTTTGATCG 777
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 AATCGCATCTGGTCCTGTTGTTCTCATGGCTGCATCTTTCATGAATGCTGTTTTTGATCG 782
Query 778 TCTTCCTATGGATGATGATGAAGCTGCCTCTATGCAGAACCAGCAGTACTACCAGAATGG 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 TCTTCCTATGGATGATGATGAAGCTGCCTCTATGCAGAACCAGCAGTACTACCAGAATGG 842
Query 838 AAGATCCCGTCCTTTAGATGACATTCATGGACTGCCTCAAAATCTGCTCACTAATGGAAA 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 AAGATCCCGTCCTTTAGATGACATTCATGGACTGCCTCAAAATCTGCTCACTAATGGAAA 902
Query 898 CTCGGCTTCTGATATCTACTCTTGGGGGCCTGCGCAGCGTGCCATGTCGAAACCTTAATA 957
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 903 CTCGGCTTCTGATATCTACTCTTGGGGGCCTGCGCAGCGTGTCATGTCGAAACCTTAATA 962
Query 958 CTACT-CTCTAATCTCCACGTTTCATCATATCAAGTGCCTTAGTCTTCTTATTATCTAAT 1016
||||| |||||||||||||||||||||||||||| ||||||| |||| ||||||| ||
Sbjct 963 CTACTGCTCTAATCTCCACGTTTCATCATATCAAATGCCTTAATCTT---ATTATCTCAT 1019
Query 1017 TTACCTTGAAATCAAAGATCAATGTTTCTGTAGGT--AGAGAGAA----AA--CTG---A 1065
|||||||| |||||||||| ||||| ||||||||| |||||||| || ||| |
Sbjct 1020 TTACCTTGGAATCAAAGATAAATGTGTCTGTAGGTTGAGAGAGAACCGTAAGTCTGGTTA 1079
Query 1066 AG---CT-----T-ATCTTCCTCTGTAGTTTGTACCTGCAACAGTAAAATGAAGAAACTG 1116
|| || | |||| ||| |||||||||||||||||||||||||| ||| ||||||
Sbjct 1080 AGAAACTGAAGCTTATCTCCCTTTGTAGTTTGTACCTGCAACAGTAAAAAGAAAAAACTG 1139
Query 1117 AGAAAAA-CACAAGTAA-TGTTTATGAATTTTAAGCACAATCCTCTAATTTAATACGAAA 1174
| ||||| || |||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1140 A-AAAAAGCAAAAGTAAATGATTATGAATTTTAAGCACAATCCTCTAATTTAATACGAAA 1198
Query 1175 A 1175
|
Sbjct 1199 A 1199
> AT2G42920.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr2:17858698-17863466 FORWARD LENGTH=4026
Length=4026
Score = 1543 bits (835), Expect = 0.0
Identities = 901/931 (97%), Gaps = 12/931 (1%)
Strand=Plus/Minus
Query 1 TTGTTAACTATTAATCACAA-TTTTGGTGACAACTTAACCATCTCCTACTCTTCACAATC 59
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 4005 TTGTTAACTATTAATCACAATTTTTGGTGACAACTTAACCATCTCCTACTCCTCACAATC 3946
Query 60 ATTCTTTTGGTGTCTCTACCATTTAATAATTCACCAAAACCTCCTTACTTAAACTCACAA 119
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 3945 ATTCTTTTGGTGTCTCTACCATTTAATAATTCACCAAAATCTCCTTACTTAAACTCACAA 3886
Query 120 ACTCCTCACAAATTTTCTGAATCTTTCACTTGAACATAT-A-AACATTCATAACAATGGC 177
|||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||
Sbjct 3885 ACTCCTCACAAATTTTCTGAATCTTTCAGTTGAACATATAACAACATTCATAACAATGGC 3826
Query 178 TGGAGGCACAGCTCTAACCCCAACCTCTGTAGGATCCAAGTCAGTTCCAATGAGGAACCA 237
|||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 3825 TGGAGGTACAGCTCTAACTCCAACCTCTGTAGGATCCAAGTCTGTTCCAATGAGGAACCA 3766
Query 238 TGAAGCAGCAGAGAGAGGCAATaacaacaacaacaacaacaacCTGAAAGCATTACCCAA 297
||||||| |||||||||| |||| || |||||||||||||| ||||||||||||
Sbjct 3765 TGAAGCAACAGAGAGAGG------CAAC-AC--CAACAACAACCTGAGAGCATTACCCAA 3715
Query 298 AGCTGTCCAACCGGTTTCATCAATCGAAGGAGAGATGGCTAAGAGGCCACGTGGCAGACC 357
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3714 AGCCGTCCAACCGGTTTCATCAATCGAAGGAGAGATGGCTAAGAGGCCACGTGGCAGACC 3655
Query 358 CGCTGGCTCCAAGAACAAACCCAAACCACCAATCATTGTGACTCACGACAGTCCCAATTC 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 3654 CGCTGGCTCCAAGAACAAACCCAAACCACCAATCATTGTGACTCACGACAGTCCAAATTC 3595
Query 418 CCTCAGAGCTAACGCCGTTGAGATCAGCTCAGGTTGTGACATCTGTGAGACTTTATCCGA 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 3594 CCTCAGAGCTAACGCCGTTGAGATCAGCTCAGGTTGTGACATCTGTGAGACTTTATCGGA 3535
Query 478 TTTCGCAAGAAGGAAACAGAGAGGTCTCTGCATACTCAGTGCCAATGGTTGTGTCACCAA 537
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 3534 TTTTGCAAGAAGGAAACAGAGAGGTCTCTGCATTCTCAGTGCCAATGGTTGTGTCACCAA 3475
Query 538 TGTGACATTAAGGCAACCAGCTTCTTCAGGAGCAATTGTGACATTACACGGACGTTACGA 597
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 3474 TGTGACATTAAGGCAACCAGCTTCATCAGGAGCAATTGTCACATTACACGGACGTTACGA 3415
Query 598 GATCCTCTCATTGCTTGGATCAATCTTGCCTCCACCAGCACCACTTGGAATAACTGGTCT 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3414 GATCCTCTCATTGCTTGGATCAATCTTGCCTCCACCAGCACCACTTGGAATAACTGGTCT 3355
Query 658 GACCATTTACTTAGCCGGACCTCAAGGACAAGTTGTTGGTGGTGGAGTGGTTGGTGGGCT 717
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 3354 GACCATTTACTTAGCCGGACCTCAAGGACAGGTTGTTGGTGGAGGAGTGGTTGGTGGGCT 3295
Query 718 AATCGCGTCTGGTCCTGTTGTTCTCATGGCTGCATCTTTCATGAATGCTGTTTTTGATCG 777
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3294 AATCGCATCTGGTCCTGTTGTTCTCATGGCTGCATCTTTCATGAATGCTGTTTTTGATCG 3235
Query 778 TCTTCCTATGGATGATGATGAAGCTGCCTCTATGCAGAACCAGCAGTACTACCAGAATGG 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3234 TCTTCCTATGGATGATGATGAAGCTGCCTCTATGCAGAACCAGCAGTACTACCAGAATGG 3175
Query 838 AAGATCCCGTCCTTTAGATGACATTCATGGACTGCCTCAAAATCTGCTCACTAATGGAAA 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3174 AAGATCCCGTCCTTTAGATGACATTCATGGACTGCCTCAAAATCTGCTCACTAATGGAAA 3115
Query 898 CTCGGCTTCTGATATCTACTCTTGGGGGCCT 928
|||||||||||||||||||||||||||||||
Sbjct 3114 CTCGGCTTCTGATATCTACTCTTGGGGGCCT 3084
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57680426205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5