BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483400
Length=875
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43000.1 | Symbols: anac042, NAC042 | NAC domain containing ... 1428 0.0
> AT2G43000.1 | Symbols: anac042, NAC042 | NAC domain containing
protein 42 | chr2:17880615-17882636 REVERSE LENGTH=882
Length=882
Score = 1428 bits (773), Expect = 0.0
Identities = 849/884 (96%), Gaps = 12/884 (1%)
Strand=Plus/Plus
Query 1 TTTTTATACAGAATGACTTGATTGGTGTT-TAATAGAGATCGATGTAGTGAAGATGAGTG 59
|||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1 TTTTTATAAAGAATGACTTGATTGGTGTTCTAA-AGAGATCGATGTAGTGAAGATGAGTG 59
Query 60 GCGAAGGTAACTTGGGTAAGGATCATGAAGAAG---ACGAAGCACCACTTCCTGGATTCA 116
||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 60 GCGAAGGTAACTTAGGTAAGGATCATGAAGAAGAAAACGAAGCACCACTTCCTGGGTTCA 119
Query 117 GATTTCATCCGACGGACGAGGAACTTTTAGGGTATTATCTTCGAAGAAAAGTAGAGAACA 176
| |||||||||||||| || || |||||||| || |||||||||||||||||||||||||
Sbjct 120 GGTTTCATCCGACGGATGAAGAGCTTTTAGGATACTATCTTCGAAGAAAAGTAGAGAACA 179
Query 177 AAACCATCAAACTCGAACTTATCAAACAGATCGATATCTATAAGTACGATCCTTGGGATC 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AAACCATCAAACTCGAACTTATCAAACAGATCGATATCTATAAGTACGATCCTTGGGATC 239
Query 237 TTCCAAGAGTGAGCAGCGTCGGAGAAAAGGAGTGGTACTTCTTCTGCATGAGAGGCAGGA 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 240 TTCCAAGAGTGAGCAGCGTCGGAGAAAAGGAGTGGTACTTCTTCTGCATGAGAGGTAGGA 299
Query 297 AATACAGGAATAGCGTTAGACCAAACCGAGTCACCGGTTCAGGTTTCTGGAAAGCCACTG 356
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 300 AATACAGGAATAGCGTTCGACCAAACCGAGTGACCGGTTCAGGTTTCTGGAAAGCCACTG 359
Query 357 GTATTGATAAACCGGTTTACTCCAATCTTGACTGTGTTGGTCTCAAGAAATCTCTGGTTT 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GTATTGATAAACCGGTTTACTCCAATCTTGACTGTGTTGGTCTCAAGAAATCTCTGGTTT 419
Query 417 ACTATCTTGGTTCAGCCGGTAAAGGAACCAAAACCGATTGGATGATGCATGAATTCCGCC 476
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 420 ACTATCTTGGTTCAGCCGGTAAAGGCACCAAAACCGATTGGATGATGCATGAATTCCGCC 479
Query 477 TCCCCACCACCACAAAAACCGACTCTCCAGCTCAACAAGCAGAGGTATGGACACTTTGCA 536
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TCCCCTCCACCACGAAAACCGACTCTCCAGCTCAACAAGCAGAGGTATGGACACTTTGCA 539
Query 537 GAATCTTCAAACGAGTCACATCTCAAAGAAACCCAACCATCGTACCACCAAACCGAAAAC 596
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 540 GAATCTTCAAACGAGTCACATCTCAAAGAAACCCAACCATCTTACCACCAAACCGAAAAC 599
Query 597 CGGTTATCACTTTAACCGACTCTTGTTCTAAGACCAGCAGCTTAGATTCCGACCACACGA 656
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 600 CGGTTATCACTTTAACCGACACTTGTTCTAAGACCAGCAGCTTAGATTCCGACCACACGA 659
Query 657 GCCACCGTATC-GTAGAG-CACTTGTCCCACGAGCCGCCGCTTCCTCAGCCACAGAACCC 714
||||||||| | ||||| | | |||||||||||||||||||||| ||||||||||| ||
Sbjct 660 GCCACCGTA-CAGTAGATTC-CATGTCCCACGAGCCGCCGCTTCCACAGCCACAGAATCC 717
Query 715 TTATTGGAACCAACATATGGTTGGTTTTAATCAACCGACATATACTTGTAATGATAATAA 774
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 718 TTATTGGAACCAACATATAGTTGGTTTTAATCAACCGACATATACTGGTAATGATAATAA 777
Query 775 CCTCCTGA-G--TTTCTGGAACGGCAACGGTGGAGATTTCATAGGAGACTCAGCAAGTTG 831
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 CCTCCTGATGAGTTTCTGGAACGGCAACGGTGGAGATTTCATAGGAGACTCAGCAAGTTG 837
Query 832 GGATGAACTTAGATCTGTTATAGATGGCAACACTAAACCCTAGT 875
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GGATGAACTTAGATCTGTTATAGATGGCAACACTAAACCCTAGT 881
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42699024950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5