BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483401
Length=1633
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43010.1 | Symbols: PIF4, SRL2, AtPIF4 | phytochrome interac... 2158 0.0
AT2G20180.2 | Symbols: PIL5 | phytochrome interacting factor 3-... 152 1e-35
> AT2G43010.1 | Symbols: PIF4, SRL2, AtPIF4 | phytochrome interacting
factor 4 | chr2:17886427-17889050 FORWARD LENGTH=1753
Length=1753
Score = 2158 bits (1168), Expect = 0.0
Identities = 1434/1553 (92%), Gaps = 56/1553 (4%)
Strand=Plus/Plus
Query 131 AGATCTTCTCCTTCAACTTCTGATTCGTCCAGAAGCTTTCCTAATCTGAGATCTGACATG 190
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 AGATCTTCTCTTTCAACTTCTGATTCGTCCAGAAGCTTTCCTAATCTGAGATCTGACATG 236
Query 191 GAACACCAAGGTTGGAGTTTTGAGGAGAATTATAGTTTGTCCACTAATAGAAGATCTATA 250
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GAACACCAAGGTTGGAGTTTTGAGGAGAATTATAGTTTGTCCACTAATAGAAGATCTATC 296
Query 251 AGGCCACACGATGAACTAGTGGAGTTGTTATGGCGAGATGGGCAAGTGGTTCTGCAGAGC 310
|||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 297 AGGCCACAAGATGAACTAGTGGAGTTATTATGGCGAGATGGACAAGTGGTTCTGCAGAGC 356
Query 311 CAAACTCATAGAGAACAAACCCAAACCCAGAAACAAGAACGTCATGAAGGAA-CCCAAAG 369
|||||||||||||||||||||||||||||||||||||| | ||||||| ||| ||| |||
Sbjct 357 CAAACTCATAGAGAACAAACCCAAACCCAGAAACAAGATCATCATGAA-GAAGCCCTAAG 415
Query 370 ATCCAACACCTTTCTTGAAGATCAAGAAACTGTGTCTTGGCTCCAATACCCTCCAGATGA 429
||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 416 ATCCAGCACCTTTCTTGAAGATCAAGAAACTGTCTCTTGGATCCAATACCCTCCAGATGA 475
Query 430 AGACCCATTCGAAACCGACGACTTCTCCTCCCACTTCTTCTCAACCGTCGATCCCCTCCA 489
||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 476 AGACCCATTCGAACCCGACGACTTCTCCTCCCACTTCTTCTCAACCATGGATCCCCTCCA 535
Query 490 GAGACCAACCTCAGAGACGGTTAAGCCTAAGTCTGGTCCT-AACCCTCCTCAAGTCATGG 548
||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||
Sbjct 536 GAGACCAACCTCAGAGACGGTTAAGCCTAAGTCCAGTCCTGAA-CCTCCTCAAGTCATGG 594
Query 549 TTAAGCCTAAGGCCTGTCCTGA--C-CCTCCTCAAGTCATGCCTCCCCCTAAATTTAGGT 605
|||||||||||||||||||||| | |||||||||||||||||||| || ||||||||||
Sbjct 595 TTAAGCCTAAGGCCTGTCCTGACCCTCCTCCTCAAGTCATGCCTCCTCCAAAATTTAGGT 654
Query 606 TAACAAATTCGCCATCGGGAATTAGGGAAACAGAAATGGAACAGTACTCGGTAACGACAA 665
|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 655 TAACAAATTCATCATCGGGGATTAGGGAAACAGAAATGGAACAGTACTCGGTAACGACCG 714
Query 666 TTGGACCTAGCCATTGCGGGAGCAACCCATCCCAGAACGATCTCGATGTCTCAATGAGTC 725
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 715 TTGGACCTAGCCATTGCGGAAGCAACCCATCACAGAACGATCTCGATGTCTCAATGAGTC 774
Query 726 AAGATCGAAGCAAAAACATAGAAGAAAAGCTTAACCCGAACGCAAGTTCCTCATCAGGTG 785
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 775 ATGATCGAAGCAAAAACATAGAAGAAAAGCTTAATCCGAACGCAAGTTCCTCATCAGGTG 834
Query 786 GCTCCTCTGGTTGCAGCTTTGGCAAGGATATCAAAGAAATGACTTGTGGAAGAAGCATCA 845
||||||||||||||||||||||||| ||||||||||||||| || |||||||| ||||||
Sbjct 835 GCTCCTCTGGTTGCAGCTTTGGCAAAGATATCAAAGAAATGGCTAGTGGAAGATGCATCA 894
Query 846 CAACAGACCGTAAGAGAAAA-GATAT-AATGGACACTGATGACTCTGTATCTCTATCAGA 903
|||| ||||||||||||||| | ||| ||| ||||||| || |||||||||||||||||
Sbjct 895 CAACCGACCGTAAGAGAAAACG-TATAAAT-CACACTGACGAATCTGTATCTCTATCAGA 952
Query 904 TGTAATCGGTAACAAGTCGAACCAACGATCAGGATCAAACCGAAGGAGTCGAGCAGCTGA 963
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 TGCAATCGGTAACAAGTCGAACCAACGATCAGGATCAAACCGAAGGAGTCGAGCAGCTGA 1012
Query 964 AGTTCATAATCTCTCCGAAAGGAGGAGGAGAGATAGGATCAATGAGAGAATGAAGGCTCT 1023
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1013 AGTTCATAATCTCTCCGAAAGGAGGAGGAGAGATAGGATCAATGAGAGAATGAAGGCTTT 1072
Query 1024 GCAGGAACTAATACCTCACTGCAGTAAAACTGATAAAGCTTCGATTTTAGACGAAGCCAT 1083
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 GCAAGAACTAATACCTCACTGCAGTAAAACTGATAAAGCTTCGATTTTAGACGAAGCCAT 1132
Query 1084 AGATTATTTGAAATCACTTCAGTTACAACTTCAAGTGATGTGGATGGGGAGTGGAATGGC 1143
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1133 AGATTATTTGAAATCACTTCAGTTACAGCTTCAAGTGATGTGGATGGGGAGTGGAATGGC 1192
Query 1144 GGCGGC------T-C--C---GATGATGTTCCCCGGAGTTCAACCTCCGCCGTTCATACG 1191
|||||| | | | |||||||||||||||||||||||||| || |||||||||
Sbjct 1193 GGCGGCGGCGGCTTCGGCTCCGATGATGTTCCCCGGAGTTCAACCTCAGCAGTTCATACG 1252
Query 1192 TCAGATGCAGAGTCCGGTACAGTTACCTCGATTTCCGGTTATGGATCGGTCTGCAATTCA 1251
|||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1253 TCAGATACAGAGCCCGGTACAGTTACCTCGATTTCCGGTTATGGATCAGTCTGCAATTCA 1312
Query 1252 GAACAATCCCGGTTTAGTTTGTCAGAACCCGATACAAAACCAGATAATCTCCGACCGGTT 1311
||||||||||||||||||||| || |||||| ||||||||||||| ||||||||||||||
Sbjct 1313 GAACAATCCCGGTTTAGTTTGCCAAAACCCGGTACAAAACCAGATCATCTCCGACCGGTT 1372
Query 1312 TGCTAGGTACATCGGTGGGTTCCCACAGATGCAGGCCGCGGCTCAG---C--C-GATGGA 1365
|||||| |||||||||||||||||||| |||||||||||| ||||| | | ||||||
Sbjct 1373 TGCTAGATACATCGGTGGGTTCCCACACATGCAGGCCGCGACTCAGATGCAGCCGATGGA 1432
Query 1366 GATGTTAAGATTTGGTTTACCGGCGGGACAGCAAATTCAACAACCG-C--CTGCGCCGAC 1422
|||||| |||||| ||| ||||||||||||||||| |||||||||| | ||| ||||||
Sbjct 1433 GATGTTGAGATTTAGTTCACCGGCGGGACAGCAAAGTCAACAACCGTCGTCTGTGCCGAC 1492
Query 1423 GAAGATCACCGACGGTTCTCGTTTGGACCACTAGGTTGGTGAGGCActtttttacttcct 1482
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1493 GAAGACCACCGACGGTTCTCGTTTGGACCACTAGGTTGGTGAGCCACTTTTTTACTTCCT 1552
Query 1483 tatttttggtatgtttgtttttct-tatctat-tta-tGAACATACTTAAAACGTT-A-- 1536
|||||||||||||||| ||||| | ||||||| || ||||||||||||||||||| |
Sbjct 1553 TATTTTTGGTATGTTTCTTTTT-TATATCTATCTTTCTGAACATACTTAAAACGTTCAAG 1611
Query 1537 --T--A--------GAGTACAACGTACAACTTCATTACGTTATTTTATGTAT--G--AGT 1580
| | ||||| ||||| |||||||||||||||||||| ||||| | |||
Sbjct 1612 GATGTATTATTATAGAGTA-AACGTGCAACTTCATTACGTTATTTTCTGTATATGTGAGT 1670
Query 1581 TTATGTATGTCAAAATGACATGATGAGATTTTTTGTAAACAACATGTTAAAAA 1633
||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1671 TTATGTATGTCAAAATGACATGATGAGATTTTTTGTAAACAACATCTTAAAAA 1723
Score = 169 bits (91), Expect = 1e-40
Identities = 119/131 (91%), Gaps = 7/131 (5%)
Strand=Plus/Plus
Query 1 ACTTTCTGTCTGTACCCAAAAGAAGTAAAGAACCTCTCTTATCATCTTCTTCTCTGTTTC 60
|||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||
Sbjct 1 ACTTTCTGTCTGTACCCAAAAGAAGTAATGAACCTCTCTCATCTTCTTCTTCTCTGTTTC 60
Query 61 TTTCATGTTTTGTGAGA-GTTTTCTCAACAATTT-CTTGGTCTCTTTAGAGTGAGAGAA- 117
|||||||||||||||| |||| ||||||||||| || |||||||| |||||||||| |
Sbjct 61 TTTCATGTTTTGTGAGTTGTTT-CTCAACAATTTTCT-GGTCTCTT-AGAGTGAGAGGAG 117
Query 118 ACGAGATAGAG 128
| |||||||||
Sbjct 118 A-GAGATAGAG 127
> AT2G20180.2 | Symbols: PIL5 | phytochrome interacting factor
3-like 5 | chr2:8704024-8706547 REVERSE LENGTH=1867
Length=1867
Score = 152 bits (82), Expect = 1e-35
Identities = 158/194 (81%), Gaps = 8/194 (4%)
Strand=Plus/Plus
Query 952 TCGAGCAGCTGAAGTTCATAATCTCTCCGAAAGGAGGA-GGAGAGATAGGATCAATGAGA 1010
||| || |||||||||||||||||||| |||| || | |||||||||||||||||||||
Sbjct 858 TCGTGCTGCTGAAGTTCATAATCTCTCTGAAA-GAAAACGGAGAGATAGGATCAATGAGA 916
Query 1011 GAATGAAGGCTCTGCAGGAACTAATACCTCACTGCAGTAAAACTGATAAAGCTTCGATTT 1070
||||||| ||| |||| ||||| ||||||| ||||| || | ||||||||||||||
Sbjct 917 GAATGAAAGCTTTGCAAGAACTTATACCTCGCTGCAACAAGTCAGATAAAGCTTCGATGC 976
Query 1071 TAGACGAAGCCATAGATTATTTGAAATCACTTCAG-TTACAACTTCA-AGTGATGTGGAT 1128
|||| ||||| || || || ||||||| |||||| || ||| | || | |||||| ||
Sbjct 977 TAGATGAAGCTATTGAGTACATGAAATCTCTTCAGCTT-CAAATACAGA-TGATGTCAAT 1034
Query 1129 GGGGA-GTGGAATG 1141
||| | ||||||||
Sbjct 1035 GGG-ATGTGGAATG 1047
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80672275815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5