BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483406
Length=2365
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43040.1 | Symbols: NPG1 | tetratricopeptide repeat (TPR)-co... 3742 0.0
> AT2G43040.1 | Symbols: NPG1 | tetratricopeptide repeat (TPR)-containing
protein | chr2:17895883-17899374 REVERSE LENGTH=2582
Length=2582
Score = 3742 bits (2026), Expect = 0.0
Identities = 2246/2352 (95%), Gaps = 15/2352 (1%)
Strand=Plus/Plus
Query 28 aaa-aaaaaGTTTCCTCTC--TTTCTAATTTTTAAAAGTTTCTTTCATCTTCTTCAGATC 84
||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 68 AAACAAAAAGTTTCCTCTCTTTTTCTAATTTTTTAAAGTTTCTTTCATCTTCTTCAGATC 127
Query 85 CGAATTTTCGCCGCAAAATTCGCCAGTGCAG---CTTCTTC-T--CG-ACCTGATTCGAT 137
|||||| ||||||| ||||||| |||||||| ||||||| | || || | |||||||
Sbjct 128 CGAATTGTCGCCGCGAAATTCGTCAGTGCAGCTTCTTCTTCTTCGCGTACTTTATTCGAT 187
Query 138 CGGCTGTCTGAAGAACATGAAGCCGATGATCGTAGTTGTTGCTTGTTACGGTGGATTGAT 197
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 188 CGGCTGTCTGAAGAACATGAAGCCGATGATCGTAGTTGCTGCTAGTTACGGTGGATTGAT 247
Query 198 ATTTGGAGGGACGCAGAAATTTTGATGCGGGTTTAGTCTTAAAGGT---GAACAATGCTC 254
|||||| ||||||||||||||||||| ||||||||||| |||||| |||||||||||
Sbjct 248 GTTTGGATGGACGCAGAAATTTTGATGTGGGTTTAGTCTAAAAGGTGAAGAACAATGCTC 307
Query 255 GGGAATCAATCCGCCGATTTTAGCGAAAACGGGGATGATGAGATCATCAGACAGCTTTGT 314
|||||||||||||| |||||||| || || ||||| ||||||||| ||||||||||||||
Sbjct 308 GGGAATCAATCCGCGGATTTTAGTGAGAAGGGGGAAGATGAGATCGTCAGACAGCTTTGT 367
Query 315 GCAAATGGGATTTGTATGAAAACAACTGAAGTTGAAGCAAAGCTTGATGAAGGAAATATC 374
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 GCTAATGGGATTTGCATGAAAACAACTGAAGTTGAAGCAAAGCTTGATGAAGGAAATATT 427
Query 375 CAAGAAGCTGAATCTTCTTTGAGAGAAGGATTATCTCTCAATTTTGAGGAAGCAAGAGCA 434
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 428 CAAGAAGCTGAATCTTCTTTGAGAGAAGGATTATCTCTCAATTTCGAGGAAGCAAGAGCA 487
Query 435 CTTCTTGGAAGATTGGAATACCAAAGAGGGAATTTAGAAGGCGCACTTCGTGTCTTTGAA 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 CTTCTTGGAAGATTGGAATACCAAAGAGGGAATTTAGAAGGCGCACTTCGTGTCTTTGAA 547
Query 495 GGTATTGACCTCCAGGCAGCTATCCAGCGGTTACAGGCTTCCGTGCCTCCTGAGAAACCA 554
||||| ||||| || |||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 548 GGTATCGACCTTCAAGCAGCTATCCAGCGGTTACAGGTTTCCGTGCCTCTTGAGAAACCG 607
Query 555 GCTACTAAGAAAAACCGTCCCCGTGAACCGCAGCAATCAGTTTCTCAGCATGCTGCTAAC 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 GCTACTAAGAAAAACCGTCCCCGTGAACCGCAGCAATCAGTTTCTCAGCATGCTGCTAAC 667
Query 615 TTGGTGCTTGAAGCTATCTACTTGAAAGCCAAATCTCTTCAAAAGCTTGGGAGAATAACC 674
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 668 TTGGTCCTTGAAGCTATCTACTTGAAAGCCAAATCCCTTCAAAAGCTTGGGAGAATAACT 727
Query 675 GAGGCTGCACGCGAATGCAAGAGTGTTCTTGATTCTGTTGAGAAAATATTCCAGCAAGGG 734
|||||||| | |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 728 GAGGCTGCTCATGAATGCAAGAGTGTTCTTGATTCTGTTGAGAAGATATTTCAGCAAGGG 787
Query 735 ATACCAGATGCTCAAGTGGATAACAAACTTCAAGAAACCGTTAGCCACGCAGTTGAACTA 794
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 788 ATACCAGATGCTCAAGTGGATAACAAACTTCAAGAAACCGTTAGCCACGCCGTTGAACTA 847
Query 795 CTTCCTGCGCTATGGAAAGAATCTGGTGATTATCAAGAAGCAATATCCGCTTATAGACGA 854
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 848 CTTCCTGCGCTATGGAAAGAATCTGGTGATTATCAAGAAGCCATATCTGCTTATAGACGC 907
Query 855 GCGCTTTTAAGCCAATGGAATCTTGATAATGACTGTTGTGCAAGGATTCAGAAAGATTTT 914
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 908 GCGCTTTTAAGCCAATGGAATCTTGATAATGATTGTTGTGCAAGGATTCAAAAAGATTTT 967
Query 915 GCAGTCTTTCTTCTACATTCTGGAGTCGAAGCGAGTCCACCGAGTTTAGGTTCTCAGATA 974
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 GCAGTCTTTCTTTTACATTCTGGAGTCGAAGCGAGTCCACCGAGTTTAGGTTCTCAGATA 1027
Query 975 GAGGGATCTTACATACCTAGAAACAACTTAGAAGAAGCCATTCTTCTTCTAATGATTCTT 1034
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1028 GAGGGATCGTACATACCTAGAAACAACATAGAAGAAGCCATTCTTCTTCTAATGATTCTT 1087
Query 1035 TTAAAGAAATTTAACCTCGGGAAAGCGAAATGGGATCCGTCTGTGTTTGAGCACCTTACC 1094
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1088 TTAAAGAAGTTTAACCTCGGGAAAGCGAAATGGGATCCGTCTGTGTTTGAGCACCTTACC 1147
Query 1095 TTTGCGTTATCTTTATGTAGTCAGACCTCGGTTCTTGCCAAGCAACTTGAAGAAGTAATG 1154
||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||
Sbjct 1148 TTTGCGTTATCTTTATGTAGTCAGACCGCGGTTCTCGCCAAGCAGCTTGAAGAAGTAATG 1207
Query 1155 CCTGGTGTGTTTAGCCGTATTGAGCGTTGGAACACTTTGGCTCTTTCTTATAGTGCAGCA 1214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1208 CCTGGTGTGTTTAGCCGTATTGAGCGTTGGAACACTTTGGCTCTTTCTTATAGTGCAGCA 1267
Query 1215 GGTCAAAACAGTGCTGCAGTTAACCTTCTTAGAAAGTCTCTGCATAAACACGAACAACCC 1274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1268 GGTCAAAACAGTGCTGCAGTTAACCTTCTTAGAAAGTCTCTGCATAAACACGAACAACCC 1327
Query 1275 GATGATCTTGTGGCGCTTTTGTTAGCTGCTAAGCTTTGCAGTGAAGAGCCTTCTTTAGCT 1334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1328 GATGATCTTGTGGCGCTTTTGTTAGCTGCTAAGCTTTGCAGTGAAGAGCCTTCTTTAGCT 1387
Query 1335 GCAGAAGGTGCGGGTTACGCGCAGAGAGCGATAAACAATGCTCAAGGTATGGATGAACAT 1394
|| |||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1388 GCTGAAGGTACGGGTTATGCGCAGAGAGCGATAAACAATGCTCAAGGTATGGATGAGCAT 1447
Query 1395 TTGAAAGGCGTTGGTTTGAGGATGTTAGGACTTTGTTTGGGGAAACAAGCGAAAGTTCCC 1454
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1448 TTGAAAGGCGTTGGTTTGAGGATGTTAGGACTTTGTTTAGGGAAACAAGCGAAGGTTCCG 1507
Query 1455 ACATCGGATTTCGAAAGATCTCGGCTTCAATCAGAATCATTGAAAGCATTGGATGGAGCT 1514
||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1508 ACATCGGATTTTGAAAGATCTCGGCTGCAATCAGAATCATTGAAAGCATTAGATGGAGCT 1567
Query 1515 ATAGCATTTGAGCACAACAATCCTGATTTGATCTTTGAGTTGGGTGTTCAATATGCTGAG 1574
||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1568 ATAGCTTTTGAGCACAATAATCCTGATTTGATCTTTGAGTTAGGTGTTCAATACGCTGAG 1627
Query 1575 CAACGGAACTTAAAAGCTGCGTCCCGTTACGCCAAAGAGTTCATTGATGCAACGGGAGGG 1634
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1628 CAACGGAACTTAAAAGCTGCTTCCCGTTACGCCAAAGAGTTCATCGATGCAACGGGAGGG 1687
Query 1635 TCGGTGTTAAAAGGATGGAGATTTCTCGCGCTTGTTTTGTCGGCTCAACAACGGTTTTCA 1694
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1688 TCAGTGTTAAAAGGATGGAGATTTCTCGCGCTTGTTTTGTCAGCTCAACAACGGTTTTCA 1747
Query 1695 GAAGCTGAAGTTGTGACTGATGCTGCTTTAGATGAAACCGCAAAGTGGGATCAAGGACCT 1754
||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1748 GAAGCAGAAGTTGTGACTGATGCTGCTTTAGATGAAACTGCAAAGTGGGATCAGGGACCT 1807
Query 1755 CTCTTGAGACTTAAAGCAAAGCTAAAAATCTCTCAGTCAAATCCAACAGAAGCCGTTGAG 1814
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1808 CTCTTGAGACTCAAAGCAAAGCTGAAAATCTCTCAGTCAAATCCAACAGAAGCCGTTGAG 1867
Query 1815 ACTTATCGTTACCTTCTTGCGTTGGTTCAAGCGCAAAGGAAATCTTTCGGACCTCTCAGA 1874
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1868 ACTTATCGTTACCTTCTTGCATTGGTTCAAGCGCAAAGGAAATCTTTCGGACCTCTCAGA 1927
Query 1875 ACTCTTTCTCAGATGGAGGAAGACAAAGTGAATGAGTTTGAAGTGTGGCATGGATTAGCA 1934
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1928 ACTCTTTCTCAGATGGAGGAAGACAAAGTGAATGAGTTTGAAGTGTGGCATGGCTTGGCT 1987
Query 1935 TATCTTTACTCAAGCCTTTCGCATTGGAACGACGTAGAAGTCTGTCT-AAAAAAGGCAGG 1993
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||
Sbjct 1988 TATCTTTACTCAAGCCTTTCGCATTGGAACGACGTAGAAGTCTGTCTGAAAAAAGCC-GG 2046
Query 1994 CGAGCTGAAGCAATACTCTGCTTCGATGCTGCACACAGAAGGTCGAATGTGGGAAGGACG 2053
|||||||| |||||||||||||| ||| |||| ||||||||||||||||||||||||||
Sbjct 2047 AGAGCTGAAACAATACTCTGCTTCAATGTTGCATACAGAAGGTCGAATGTGGGAAGGACG 2106
Query 2054 AAAGGAGTTCAAACCCGCGTTAGCAGCTTTCTTGGATGGTTTATTACTAGACGGATCATC 2113
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 2107 AAAGGAGTTCAAACCCGCGCTAGCAGCTTTCTTGGACGGTTTATTACTAGACGGATCATC 2166
Query 2114 GGTTCCTTGCAAAGTAGCGGTTGGAGCATTGCTGTCCGAAAGAGGGAAAGATCATCAGCC 2173
||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 2167 GGTTCCTTGCAAAGTAGCGGTTGGAGCGTTATTGTCCGAAAGAGGGAAAGATCATCAGCC 2226
Query 2174 GACCCTCCCCGTGGCGAGAAGTTTGCTCTCTGATGCATTGAGGATCGATCCGACAAACCG 2233
|| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2227 AACTCTCCCCGTGGCTAGAAGTTTGCTCTCTGATGCATTGAGGATCGATCCAACAAACCG 2286
Query 2234 AAAAGCTTGGTATTACTTAGGAATGGTTCATAAATCTGATGGACGTATAGCTGATGCTAC 2293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2287 AAAAGCTTGGTATTACTTAGGAATGGTTCATAAATCTGATGGACGTATAGCTGATGCTAC 2346
Query 2294 TGATTGCTTCCAAGCTGCTTCTATGCTTGAAGAGTCTGATCCTATTGAAAGCTTCTCAAC 2353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2347 TGATTGCTTCCAAGCTGCTTCTATGCTTGAAGAGTCTGATCCTATTGAAAGCTTCTCAAC 2406
Query 2354 CATTCTTTAAAA 2365
||||||||||||
Sbjct 2407 CATTCTTTAAAA 2418
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117419074755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5