BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483407
Length=1700
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43050.1 | Symbols: ATPMEPCRD | Plant invertase/pectin methy... 2615 0.0
AT3G59010.1 | Symbols: PME61 | pectin methylesterase 61 | chr3:... 558 5e-158
> AT2G43050.1 | Symbols: ATPMEPCRD | Plant invertase/pectin methylesterase
inhibitor superfamily | chr2:17902484-17904443 FORWARD
LENGTH=1850
Length=1850
Score = 2615 bits (1416), Expect = 0.0
Identities = 1573/1650 (95%), Gaps = 5/1650 (0%)
Strand=Plus/Plus
Query 1 TAATCATTAAGTTTCATAACTATTATGGCTTCATCATCATCAATATCAAATCACAAGATT 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 TAATCATTAAGTTTCATAACTATAATGGCTTCATCATCATCAATATCAAATCACAAGATT 60
Query 61 CCAAAAACACTAATGTTTTTGCTGATCTTAAACTTTTTATACCTAATCCAACCTACTTCA 120
||||| ||||||||||||||| ||||| |||||||||| |||||||| ||| ||| ||||
Sbjct 61 CCAAACACACTAATGTTTTTGGTGATCGTAAACTTTTTGTACCTAATTCAAACTAATTCA 120
Query 121 GCTGTGAGTACCAGTTCCAATTCCAACTCCCACTTCTCAAGATTCTCGAGACATCGAAGC 180
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCTGTCAGTATCAGTTCCAATTCCAACTCCCACTTCTCAAGATTCTCGAGACATCGAAGC 180
Query 181 TCACCATCATCAAAACCCAAACAAGGGTTTCTTGCATCGGTCCAAGAGAGTATGAACCAT 240
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 181 TCACCATCATCAAAAACCAAACAAGGGTTTCTTGCAACGGTCCAAGAGAGTATGAACCAT 240
Query 241 GCTCTCTTAGCTCGTTCTCTCGCTTTCAATCTCACTCTTTCTCACCGAACCGTACAAACA 300
|||||||| ||||||||||| |||||||| |||||||||||||| ||||||||||||||
Sbjct 241 GCTCTCTTGGCTCGTTCTCTTGCTTTCAACCTCACTCTTTCTCATCGAACCGTACAAACC 300
Query 301 CACACATTCGATCCCGTCCACGACTGCCTCGAGCTACTCGACGACACACTTGACATGTTA 360
||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 CACACGTTCGATCCCATCCACGACTGCCTCGAGCTGCTCGACGACACACTTGACATGTTA 360
Query 361 TCTCGCATACATGCGGATAATGACGAAGAAGATGTCCATACATGGCTAAGCGCAGCACTC 420
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 361 TCTCGCATCCATGCGGATAATGATGAAGAAGATGTCCATACATGGCTAAGCGCAGCACTC 420
Query 421 ACGAACCAAGATACTTGTGAGCAGAGCCTTCAAGAAAAATCCAAGTCATACAAACACGGA 480
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 421 ACGAACCAAGACACTTGTGAGCAGAGCCTTCAAGAAAAATCCGAGTCATACAAACACGGA 480
Query 481 CTTGCGATGGATTTCGTCGCAAGAAACCTCACCGGATTGTTGACTAACTCGCTTGACTTG 540
||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||
Sbjct 481 CTTGCGATGGATTTCGTCGCAAGAAACCTAACCGGTTTGTTGACTAGCTCGCTTGACTTG 540
Query 541 TTCGTATCCGTGAAGTCAAAACACCGGAAACTCTTATCGGAACAAAAATATTTTCCGACG 600
||||||||||| ||||||||||||||||||||||||||| ||||| | ||||||||||||
Sbjct 541 TTCGTATCCGTCAAGTCAAAACACCGGAAACTCTTATCGAAACAAGAGTATTTTCCGACG 600
Query 601 TTCGTTCCTTCGTCGGAGCAGCGGAGGCTTCTAGAAGCTCCCGTGGAGGAGCTGAAGGTT 660
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 601 TTCGTTCCTTCGTCGGAGCAACGGAGGCTTCTAGAAGCTCCGGTGGAGGAGCTGAATGTT 660
Query 661 GATGTGGTGGTGGCTGCC-GACGGAAGTGGGACACACAAAACCATAGGAGAAGCCTTGTT 719
|||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GATGCGGTGGTGGCT-CCTGACGGAAGTGGGACACACAAAACCATAGGAGAAGCCTTGTT 719
Query 720 GTCTACGTCATTAGCGAGTAGTGGGGGCAGGACCACAATATACCTAAAAGCCGGGACCTA 779
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 720 GTCTACGTCATTAGCGAGTAGTGGGGGCAGGACCAAAATATACCTAAAAGCCGGGACATA 779
Query 780 TCATGAGAACATCAACATTCCGACGAAGCAGAAGAACGTTATGTTAGTTGGTGACGGGAA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TCATGAGAACATCAACATTCCGACGAAGCAGAAGAACGTTATGTTAGTTGGTGACGGGAA 839
Query 840 GGGTAAAACGGTCATTGTAGGTAGCCGAAGTAATAGAGGCGGCTGGACTACTTACAAAAC 899
||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 840 GGGTAAAACAGTCATTGTAGGTAGCAGAAGTAACAGAGGCGGCTGGACTACTTACAAAAC 899
Query 900 TGCCACCGTCGCCGCGATGGGAGAGGGGTTCATAGCACGGGACATGACATTCGTGAACAA 959
||| ||||||||||| ||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 900 TGCAACCGTCGCCGCTATGGGGGAAGGGTTCATAGCGCGGGACATGACATTCGTGAACAA 959
Query 960 CGCCGGACCCAAATCGGAGCAAGCGGTGGCGCTCCGTGTCGGAGCAGATAAATCCGTTGT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 960 CGCCGGACCCAAATCGGAGCAAGCGGTGGCGCTCCGTGTCGGAGCAGATAAATCCGTCGT 1019
Query 1020 GCATCGATGCTCAGTGGAAGGATATCAAGATTCACTCTACACACACTCCAAACGACAATT 1079
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1020 GCATCGATGCTCAGTGGAAGGATACCAAGATTCACTCTACACACACTCCAAACGACAATT 1079
Query 1080 CTATCGAGAGACAGATATCACCGGCACCGTCGATTTCATCTTCGGAAACTCCGCCGTCGT 1139
|||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1080 CTATAGAGAGACGGATATCACCGGCACCGTCGATTTCATATTCGGAAACTCCGCCGTCGT 1139
Query 1140 ATTTCAATCTTGCAACATCGCCGCTCGTAAACCTTTACCGGGTCAGAGAAACTTCGTGAC 1199
||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1140 ATTTCAATCCTGCAACATCGCCGCACGGAAACCTTTACCGGGTCAGAGAAACTTCGTGAC 1199
Query 1200 GGCGCAAGGACGGAGCAATCCGGGTCAAAACACCGGAATCTCGATTCAAAACTGTAGAAT 1259
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||
Sbjct 1200 GGCGCAAGGACGGAGCAATCCGGGTCAAAACACCGGAATCGCGATTCAAAACTGCAGGAT 1259
Query 1260 CACGGCGGAATCGATGACTTATCTTGGTCGGCCGTGGAAGGAGTATTCGAGGACGGTGGT 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 CACGGCGGAATCGATGACTTATCTTGGTCGGCCGTGGAAGGAGTATTCGAGGACGGTGGT 1319
Query 1320 GATGCAATCTTTTCTCGGCGGGTCTATTCATCCGTCGGGTTGGTCTCCTTGGTCGGGTGG 1379
||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1320 GATGCAATCATTTATCGGCGGGTCGATTCATCCGTCGGGTTGGTCTCCTTGGTCGGGTGG 1379
Query 1380 TTTCGGTCTCAAATCTCTGTTTTACGGAGAATTTGAGAATTCGGGTCCTGGATCATCGGT 1439
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1380 TTTCGGTCTCAAATCTCTGTTTTACGGAGAATATGGGAATTCGGGTCCTGGATCATCGGT 1439
Query 1440 TTCGGGTCGGGTTAAATGGAGTGGGTATCATTCTTCTTTGACGGTGACGGAAGCGGAAAA 1499
|||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||
Sbjct 1440 TTCGGGTCGGGTTAAATGGAGTGGGTGTCATCCGTCTTTGACGGTGACGGAAGCGGAAAA 1499
Query 1500 ATTCACTGTGGCG-GTTTTTATTGACGGGAATATGTGGTTGCCGTCAACGGGCGTTAGTT 1558
||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1500 ATTCACTGTGGCGAGTTTT-ATTGACGGGAATATATGGTTGCCGTCAACGGGCGTTAGTT 1558
Query 1559 TCGACTCTGGACTTGTGAAATGAGCTTTGTAATTAA-GCTCGTTTGATAAATAAATTATT 1617
||||| | ||||||||||| |||||||||||||||| |||| ||||||||||||||| ||
Sbjct 1559 TCGACCCAGGACTTGTGAATTGAGCTTTGTAATTAAAGCTCCTTTGATAAATAAATTCTT 1618
Query 1618 ATATAGTCATTTATCTTGTGATTAAAGTAA 1647
||||||| |||||| |||||||||||||||
Sbjct 1619 ATATAGTTATTTATGTTGTGATTAAAGTAA 1648
Score = 76.8 bits (41), Expect = 6e-13
Identities = 49/53 (92%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 1648 CTTTTCTTATTTTATTATTTGTATATTTGGGTGTAACCAGGGaaaaaaaaaaa 1700
|||||||| |||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1669 CTTTTCTTTTTTTATTATTTGTATATTTGGGTGTAACTAAAGAAAAAAAAAAA 1721
> AT3G59010.1 | Symbols: PME61 | pectin methylesterase 61 | chr3:21802805-21805214
REVERSE LENGTH=1916
Length=1916
Score = 558 bits (302), Expect = 5e-158
Identities = 782/1007 (78%), Gaps = 60/1007 (6%)
Strand=Plus/Plus
Query 590 ATTTTCCGACGTTCGTTCCTTCGTCGGAGCAGCGGAGGCTTCTAGAAGCTCCCGTGGAGG 649
|||||||||||| ||| ||||||| || | |||| |||| |||||||| | || || |
Sbjct 730 ATTTTCCGACGTGGGTTTCTTCGTC--AG-ACCGGAAGCTTTTAGAAGCTTCAGTAGAAG 786
Query 650 AGCTGAAG-GTTGATG-TGGTGGTGGCTGCCGACGGAAGTGGGACACACAAAACCATAGG 707
||||| || | | | | |||||||| ||||||||||| ||||| |||| | | |||
Sbjct 787 AGCTG-AGACCTCACGCT-GTGGTGGCAGCCGACGGAAGCGGGACTCACATGAGCGTAGC 844
Query 708 AGAAGCCTTGTTGTCTACGTCATTAGCGAGTAGTGG--G-GGCAGGACCACAATATACCT 764
|||| | |||| |||| || | ||| || || | ||||| | | ||| | |
Sbjct 845 CGAAG-C--GTTG---GCGTC-TTTG-GAGAAG-GGAAGTGGCAGAAGCGTAATCCATTT 895
Query 765 AAAAGCCGGGACCTATCATGAGAA-CATCAACATTCCGACG-AAGCAGAAGAACGTTATG 822
|| |||||| |||||| | ||||| | | || ||||||| | || |||||||||||||||
Sbjct 896 AACAGCCGGAACCTATAAAGAGAATC-TGAATATTCCGA-GCAAACAGAAGAACGTTATG 953
Query 823 TTAGTTGGTGACGGGAAGGGTAAAACGGTCATTGTAGGTAGCCGAAGTAATAGAGGCGGC 882
|| || |||||||||||||| ||||| |||||||| |||||| ||||||| |||||||||
Sbjct 954 TTGGTCGGTGACGGGAAGGGCAAAACAGTCATTGTCGGTAGCAGAAGTAACAGAGGCGGC 1013
Query 883 TGGACTACTTACAAAACTGCCACCGTCGCCGCGATGGGAGAGGGGTTCATAGCACGGGAC 942
|||| ||||||| || | || || |||||||| |||||||| || |||||||| || |||
Sbjct 1014 TGGAATACTTACCAATCCGCTACTGTCGCCGCCATGGGAGATGGATTCATAGCTCGAGAC 1073
Query 943 ATGACATTCGTGAACAACGCCGGACCCAAA-TCGGAGCAAGCGGTGGCGCTCCGTGTCGG 1001
|| ||||||||||||| |||||| ||||| ||||||||||| || || | || |||||
Sbjct 1074 ATAACATTCGTGAACAGTGCCGGA-CCAAACTCGGAGCAAGCTGTAGCATTACGGGTCGG 1132
Query 1002 AGCAGATAAATCCGTTGTGCAT-C-GATGCTCAGTGGAAGGATATCAAGATTCACTCTAC 1059
| |||||| |||| || | || | |||||||| | || || || ||||| |||||||||
Sbjct 1133 ATCAGATAGGTCCG-TG-GTATACAGATGCTCAATAGATGGGTACCAAGACTCACTCTAC 1190
Query 1060 ACACACTCCAAACGACAATTCTATCGAGAGACAGATATCACCGGCACCGTCGATTTCATC 1119
|| | |||||||||||| |||||| |||| || || || || ||||||||||||||||||
Sbjct 1191 ACTCTCTCCAAACGACAGTTCTATAGAGAAACCGACATAACAGGCACCGTCGATTTCATC 1250
Query 1120 TTCGGAAACTCCGCCGTCGTATTTC-AAT-CTTGCAACATCGCCGCTCGTAAAC-CTT-T 1175
||||||||||| |||||||| |||| || || ||||| ||| |||||||| || |
Sbjct 1251 TTCGGAAACTCTGCCGTCGT-TTTCCAAAGCT-GCAACCTCGTATCTCGTAAAGGCTCCT 1308
Query 1176 ACCGGGTCAGAGAAACTTCGTGACGGCGCAAGGACGGAGCAATCCGGGTCAAAACACCGG 1235
| || |||| | || ||| ||||| ||||| ||| | | ||| || ||||||||
Sbjct 1309 -C-GGACCAGA-A--CTACGTCACGGCCCAAGGCCGGTCCGACCCGAACCAGAACACCGG 1363
Query 1236 AATCTCGATTCAAAACTGTAGAATCAC-GG--CGGAATCGATGACTTATCTTGG-TCGGC 1291
|| || || || || || ||||| || || || | | | |||||| ||||| ||| |
Sbjct 1364 TATTTCTATCCATAATTGCAGAATAACCGGTTCG-AC-CAA-GACTTA-CTTGGGTCGTC 1419
Query 1292 CGTGGAAGGAGTATTCGAGGACGGTGGTGATGCAATCTTTTCTCGGCGGGTCTATTCATC 1351
| |||||| ||||||||||||| || ||||||||||| ||| | | ||| || ||||| |
Sbjct 1420 CATGGAAGCAGTATTCGAGGACTGTTGTGATGCAATCGTTTATAGACGGCTCGATTCACC 1479
Query 1352 CGTCGGGTTGGTCTCCTTGGTCGGGTGG-TTTCGGTCTCAA-ATCTCTGTT-TTACGGAG 1408
| ||||||||||||||||||||| || ||| | | | || | |||| || ||||||||
Sbjct 1480 CTTCGGGTTGGTCTCCTTGGTCGAGTAACTTT-GCTTTGAAGA-CTCT-TTATTACGGAG 1536
Query 1409 AATTTGAGAATTCGGGTCCTGGATCATCGGTTTCGGGTCGGGTTAAATGGAGT-GGGTAT 1467
|||||| |||||||||||||||||||||||| ||||||||||||| ||| | ||||||
Sbjct 1537 AATTTGGGAATTCGGGTCCTGGATCATCGGTGTCGGGTCGGGTTAGTTGG-GCCGGGTAT 1595
Query 1468 CATTCTTCTTTGACGGTGACGGAAGCGGAAAAATTCACTGTGGCGGTTTTTATTGACGGG 1527
|| | | |||||| |||| ||||| || || ||||| ||| ||| |||||||||
Sbjct 1596 CACCCGGCGTTGACGTTGACTGAAGCTCAAGGGTTTACTGTTTCGGGTTTCATTGACGGG 1655
Query 1528 AATATGT-GGTTGCCGTCAACGGGCGTTAGTTT-CGACTCTGGACTT 1572
||| | | ||||||||||||| || || |||| ||||||||| |||
Sbjct 1656 AAT-TCTTGGTTGCCGTCAACAGGTGTC-GTTTTCGACTCTGGCCTT 1700
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84035712330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5