BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483408
Length=844
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43060.1 | Symbols: IBH1 | ILI1 binding bHLH 1 | chr2:179091... 1134 0.0
> AT2G43060.1 | Symbols: IBH1 | ILI1 binding bHLH 1 | chr2:17909185-17910082
FORWARD LENGTH=898
Length=898
Score = 1134 bits (614), Expect = 0.0
Identities = 787/863 (91%), Gaps = 41/863 (5%)
Strand=Plus/Plus
Query 2 aaaaaaaaaGTTTTATAAAGGTTCTCAATTCAAGTTCTCTTCTCTAAACAACCCAAACCA 61
|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
Sbjct 4 AAAAAAAAAGTTTTATAAAGGTTCTCAACTCAAGTTCTCTTCTCTAAAAAACCCAAACAA 63
Query 62 TGGCCTCTGCAGACAAACTCATAAACACAGATGTCCCTGAAAAGGACGTTTTTGCCCTCC 121
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 64 TGGCCTCTGCAGACAAACTCATAAACACAGATGTCCCTGAAAAGGACGTTTTTGCCTTCC 123
Query 122 ACTTTCTCCAATCCCTCTCAAATCTCAGAACACAAAACCCTTTAAATTCTCCGGA-CAAA 180
|||| ||||||||||||||||||||||||| |||||||||||| || ||||||| ||||
Sbjct 124 ACTTCCTCCAATCCCTCTCAAATCTCAGAAAACAAAACCCTTTTGATACTCCGGACCAAA 183
Query 181 TCAATA-GATCGTGTGAGAAAGATCAAGAAGGCTGCGTACGTTTCCATGGCCAGAGCAGC 239
|| | | || ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 184 --AAAACTACCGCGTGAGGAAGATCAAGAAGGCTGCGTACGTTTCCATGGCCAGAGCAGC 241
Query 240 CGGAGGGAATAGCCGGCTATGGAGCAGAGCCCTCTTGCGCCGAGCCGCCAAAGATGACAA 299
|||||||| |||||||||||||||||||||||||||||| |||| | ||||||||||||
Sbjct 242 CGGAGGGAGTAGCCGGCTATGGAGCAGAGCCCTCTTGCGTAGAGCAGACAAAGATGACAA 301
Query 300 CAAGAGCGTAAGATTTTCAAGGAGGAAGAGGAAGATATCATCAAAACGGAGGAGGAGTAA 359
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 302 CAAGATCGTAAGATTTTCAAGGAGGAAGTGGAAGATATCATCAAAACGGAGGAGGAGTAA 361
Query 360 CCAGAGAGCTCCGGTGGTGGAGGAGGCGGCGGAGAGGCTGAGGAATCTTGTTCCGGGAGG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 CCAGAGAGCTCCGGTGGTGGAGGAGGCGGCGGAGAGGCTGAGGAATCTTGTTCCGGGAGG 421
Query 420 CGGAGGAATGGAGACGTCAAAGCTGATGGAAGAGACGGCTCATTACATCAAGTGCCTTAG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 CGGAGGAATGGAGACGTCAAAGCTGATGGAAGAGACGGCTCATTACATCAAGTGCCTTAG 481
Query 480 TATGCAGGTCAAGGTCATGCAGTGCCTCGTTGATGGTTTATCTCAGAAATGatcatcatt 539
|||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||| |
Sbjct 482 TATGCAGGTCAAGGTCATGCAGTGTCTCGTTGATGGCTTATCTCCCAAATGATCATCAAT 541
Query 540 taatcatcatcatcatcaattcatcatcaGTGATTGATGTATATAGAGATCATACAACAC 599
||||||||| | ||||| | ||||| | |||| ||||||||||||||| | | ||||
Sbjct 542 TAATCATCA--A-CATCA-T-CATCA--A-TGATCGATGTATATAGAGAT-A--CGACAC 590
Query 600 ATGCAT-GATACATAGTATTGGATTGGGGTAATCATAAC-ACATAGATACGTGtatatat 657
|| ||| | | | || | | ||||||||||||||||||| | ||| ||| ||||||||||
Sbjct 591 ATACATAG-T-C-TA-T-T-GGATTGGGGTAATCATAACGA-ATATATATGTGTATATAT 643
Query 658 acatatatatatatatatata--C--ATA------C----GTGTAAGATAGGATACATAT 703
| ||||||||||||||||||| | ||| | ||||||||||||||||||||
Sbjct 644 ATATATATATATATATATATATTCTTATATATATACATACGTGTAAGATAGGATACATAT 703
Query 704 ATGAAATGTGTGGATATGTAT--GTCTCGAAGTAACGAAAGAttttttttctttttcttt 761
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 704 ATGAAATGTGTGGATATGTATTAGTCTCGAAGTAACGAAAGATTTTTTT-CTTTTTCTTT 762
Query 762 tcttgaattttGATAAATGGGGATTTATTATTTATCATATGCTATGGCCGGTTTAAACAT 821
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 TCTTGAATTTTGATAAAAGGGGATTTATTATTTATCATATGCTATGGCCGGTTTAAACAT 822
Query 822 TAGGGCTTGGGAACTTGCCGTTG 844
|||||||||| |||||||| |||
Sbjct 823 TAGGGCTTGGTAACTTGCCCTTG 845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41141766393
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5