BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483410
Length=1032
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43090.1 | Symbols: | Aconitase/3-isopropylmalate dehydrata... 1458 0.0
> AT2G43090.1 | Symbols: | Aconitase/3-isopropylmalate dehydratase
protein | chr2:17918927-17920429 FORWARD LENGTH=1046
Length=1046
Score = 1458 bits (789), Expect = 0.0
Identities = 962/1041 (92%), Gaps = 30/1041 (3%)
Strand=Plus/Plus
Query 1 AAACAATGGCGGCTTCTCTGCAATCAGCAAACCCTACATTGTCCCGAACCCTAGCTTCTC 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 26 AAACAATGGCGGCTTCTCTGCAATCAGCAAACCCTACATTGTCACGAACCCTAGCTTCTC 85
Query 61 CGAACAAATCTCCCTCCTTCGCTACCTTCCGATCTCCATTTCTCAGATTCAATTCCACCT 120
|||||||| || |||||||||| |||||||||||||||||||||||||||||||| || |
Sbjct 86 CGAACAAACCTTCCTCCTTCGCCACCTTCCGATCTCCATTTCTCAGATTCAATTCAACAT 145
Query 121 CCGTCGCTTCCAATTTCAAACCCCTCGTTTCACGAGAAGCATCCTCATCGTTCGTCACAC 180
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct 146 CCGTCGCTTCCAATTTCAAACCCCTAGTTTCTCGAGAAGCATCCTCATCGTTCGTCACTC 205
Query 181 GCTCCGCCGCCGAGCCACAAGAGAGAAAAACCTTCCATGGACTCTGCTATGTCGTCGGTG 240
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
Sbjct 206 GCTCCGCCGCCGAGCCACAAGAAAGAAAAACCTTCCATGGACTGTGCTATGTCGTCGGCG 265
Query 241 ACAACATCGACACTGACCAAATCATTCCCGCAGAGTTTCTCACTCTCGTCCCTTCGAATC 300
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 266 ACAACATCGACACTGACCAAATCATTCCCGCGGAGTTTCTCACTCTCGTCCCTTCGAATC 325
Query 301 CAGAAGAATACGAGAAACTCGGTTCCTACGCTCTAGTTGGTCTTCCAGCTTCTTACAAGG 360
|||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 326 CAGAGGAATACGAGAAACTCGGTTCTTACGCTTTAGTTGGTCTTCCAGCTTCTTACAAGG 385
Query 361 AGCGATTCGTTCAGCCAGGAGAGATGAAGACGAAGTACTCAATCATCATCGGCGGTGAAA 420
| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 386 AACGATTCGTTCAGCCAGGTGAGATGAAGACGAAGTACTCAATCATCATTGGCGGTGAAA 445
Query 421 ACTTCGGATGTGGATCGTCACGTGAACATGCTCCGGTTTGTTTAGGAGCAGCGGGAGCTA 480
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 446 ACTTTGGATGTGGATCGTCACGTGAACATGCTCCGGTTTGTTTAGGAGCAGCGGGAGCTA 505
Query 481 AAGCAGTGGTGGCTCAGTCTTATGCTAGAATCTTTTTCAGGAACTCTGTGGCTACAGGTG 540
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 506 AAGCAGTGGTGGCTCAGTCTTATGCTAGAATCTTTTTCAGGAACTCTGTTGCTACTGGTG 565
Query 541 AGGTTTATCCGTTGGATTCGGAGGTTAGGGTTTGTGATGAGTGTAAAACTGGTGATGTTG 600
|||||||||| |||||||| || |||||||||||||||||||||| ||||||||||||||
Sbjct 566 AGGTTTATCCTTTGGATTCTGAAGTTAGGGTTTGTGATGAGTGTACAACTGGTGATGTTG 625
Query 601 CGACGGTTGAATTGAGGGAAGGTGATAGTATTCTGATCAATCATACGACGGGGAAAGAGT 660
|||| ||||| ||||||||||| ||||||||| |||||||||||||||| ||||||||||
Sbjct 626 CGACTGTTGAGTTGAGGGAAGGAGATAGTATTTTGATCAATCATACGACTGGGAAAGAGT 685
Query 661 ATAAGCTTAAGCCGATTGGTGATGCTGGACCAGTTATTGATGCTGGTGGTATATTTGCTT 720
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 686 ACAAGCTTAAGCCGATTGGTGATGCTGGACCAGTGATTGATGCTGGTGGTATATTTGCTT 745
Query 721 ATGCTAGGAAAGCTGGAATGATTCCATCTGCTGCTGCTTGATTTT-ACCTTGAGGTGTCA 779
||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 746 ATGCTAGGAAAGCTGGAATGATTCCATCTGCTGCTGCTTGATTTTGAC-TTCAGGTGTCA 804
Query 780 ATGCAAGTGCATGAGAGTCTCTTGAAGGATCTTGATCCAATAAAAAGAACAATAAGAGTA 839
||| ||||||||||||||| ||| ||||||||||||||||||| ||||| || |
Sbjct 805 ATGGAAGTGCATGAGAGTCACTTCAAGGATCTTGATCCAATAATAAGAA---TA----T- 856
Query 840 TGTAATGTTTCCAAAAAGCTTATGAACCTAATCTATGTTTTATGAATATATATGACTATT 899
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 -GTAATGTTTCCAAAA-GCTTATGAACCTAATCTATGTTTTATGAATATATATGACTATC 914
Query 900 GATGATTGGCTTAGTCTTCAGTTTCGGTTTTGCTTGTCTACATTTGGCTGTTTCAGCTGC 959
| | || | |||||||||| || |||| ||||| ||||||||| ||| ||||||||
Sbjct 915 G--GCTT---T-AGTCTTCAGTATCAGTTT--CTTGTTTACATTTGGATGTATCAGCTGC 966
Query 960 TAAAAATGCATGCATAGTTT---AT----TT-GAAACGACGTTTTCTCTCATTTCTTCCA 1011
|||||| ||||||||||| || || |||||||||||||||||||| |||||||
Sbjct 967 TAAAAAA--ATGCATAGTTTCCCATCCCATTTGAAACGACGTTTTCTCTCATGTCTTCCA 1024
Query 1012 CTAATTTAATCTTCCGGTCAT 1032
||||| |||||||| ||||||
Sbjct 1025 CTAATATAATCTTCTGGTCAT 1045
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50585786029
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5