BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483411
Length=768
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43100.1 | Symbols: IPMI2, ATLEUD1 | isopropylmalate isomera... 1160 0.0
> AT2G43100.1 | Symbols: IPMI2, ATLEUD1 | isopropylmalate isomerase
2 | chr2:17920660-17921689 FORWARD LENGTH=1030
Length=1030
Score = 1160 bits (628), Expect = 0.0
Identities = 726/773 (94%), Gaps = 7/773 (1%)
Strand=Plus/Plus
Query 1 ATGGCGTCTTCTCTTCCTACATTGCCGCAAGCCTTACCGT-CTTCGCT-AACCAAAACTT 58
||||||| ||||||||||||||| || ||||||||||| | | ||| | |||||||||||
Sbjct 26 ATGGCGTATTCTCTTCCTACATTTCCCCAAGCCTTACCTTGC-TCG-TCAACCAAAACTT 83
Query 59 CTTCCT-C--GGCTACCTTCAAATCTCCTTTCCTAAGATTCAATGGTTCCACTTCCTTCA 115
|||||| | |||||||||| |||||||||| ||||||||||||||||||||||||| |
Sbjct 84 CTTCCTCCTTGGCTACCTTCCGATCTCCTTTCTTAAGATTCAATGGTTCCACTTCCTTAA 143
Query 116 TCCCATCCTCTATCTCCCTCACTTCACGTGGTACATCCTCCATGACCATCATCCCACGTG 175
|||| |||||||||||| ||||||||||||| ||||||||| |||||||||||||||||
Sbjct 144 TCCCCTCCTCTATCTCCATCACTTCACGTGGCACATCCTCCCCGACCATCATCCCACGTG 203
Query 176 CTGCAGCCACAGAATCCGACTCTAACGAAGCCTTAGCCAACACTACCTTCCACGGTCTCT 235
|||| ||| ||||||||||||||||||||||| |||||||||| ||||||||||| ||||
Sbjct 204 CTGCCGCCTCAGAATCCGACTCTAACGAAGCCCTAGCCAACACAACCTTCCACGGCCTCT 263
Query 236 GCTATGTCTTGAAAGACAACATAGACACCGACCAGATCATCCCAGCAGGAGCCGCTTGCA 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 264 GCTATGTCTTGAAAGACAACATAGACACCGACCAGATCATCCCAGCAGGAGCCGCTTGCA 323
Query 296 CCTTCCCATCAAACCAGCAAGAACGTGATGAGATCGCTGCTCACGCTCTCTCTGGTCTCC 355
|||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 324 CCTTCCCATCGAACCAGCAAGAGCGTGATGAGATCGCCGCTCACGCTCTCTCTGGTCTAC 383
Query 356 CAGACTTCCACAAAACACGGTTCGTTGAGCCAGGAGAGAACAGATCAAAGTACTCAATCA 415
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 384 CAGACTTCCACAAAACACGGTTCATTGAGCCAGGAGAGAACAGATCAAAGTACTCAATCA 443
Query 416 TAATCGGTGGAGAAAACTTTGGTTGTGGATCGTCACGTGAACACGCTCCAGTCTGTCTAG 475
||||||| || |||||||||||||| ||||||||||||||||| ||||| |||||||| |
Sbjct 444 TAATCGGCGGCGAAAACTTTGGTTGCGGATCGTCACGTGAACATGCTCCGGTCTGTCTTG 503
Query 476 GAGCAGCTGGAGCTAAAGCCATAGTTGCTGAATCCTACGCAAGGATCTTTTTCCGTAACT 535
||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||
Sbjct 504 GAGCAGCTGGAGCTAAAGCCATAGTTGCTGAGTCTTACGCAAGAATCTTTTTCCGTAACT 563
Query 536 CAGTGGCTACAGGAGAGGTGTTTCCGCTCGAGTCAGAGGTTAGAGTCTGTGAGGAGTGTA 595
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 564 CGGTTGCTACAGGAGAGGTGTTTCCGCTCGAGTCAGAGGTTAGAGTCTGTGAGGAGTGTA 623
Query 596 AGACAGGAGACACTGTGACGATCGAGCTGAGTGATAGTGGTGGTTTATTGACTAATCACA 655
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 624 AGACAGGAGATACGGTGACGATCGAGCTGAGTGATAGTGGTGGTTTATTGACTAATCACA 683
Query 656 CAACCGGGAAAAACTATAAGCTGAAGTCGATCGGTGATGCTGGACCGGTTATTGATGCTG 715
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 684 CGACCGGTAAAAACTATAAGCTGAAGTCGATCGGTGATGCTGGACCGGTTATTGATGCTG 743
Query 716 GTGGGATTTTTGCTTACGCGAGGATGATGGGAATGATTCCATCATTAGCTTAA 768
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 744 GTGGTATTTTTGCTTATGCGAGGATGATGGGAATGATTCCATCATTAGCTTAA 796
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37323971221
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5