BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483416
Length=1036
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43150.1 | Symbols: | Proline-rich extensin-like family pro... 1568 0.0
> AT2G43150.1 | Symbols: | Proline-rich extensin-like family protein
| chr2:17945893-17947022 FORWARD LENGTH=1047
Length=1047
Score = 1568 bits (849), Expect = 0.0
Identities = 976/1037 (94%), Gaps = 10/1037 (1%)
Strand=Plus/Plus
Query 1 ATGGCGACTCCGGCATGGAGTCATGCCAAGGCTCAATGGGTAGTGGCCATGTTGGCGTTA 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGCGACTCCGGCATGGAGTCATGCCAAGGCTCAATGGGTAGTCGCCATGTTGGCGTTA 60
Query 61 CTCGTTGGCTCGGCTATGGCTACCGAACCTTATTACTATAGTTCTCCTCCACCACCGTAC 120
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 61 CTCGTTGGCTCGGCTATGGCTACCGAACCTTATTACTATAGCTCTCCTCCACCACCGTAT 120
Query 121 GAGTATAAATCTCCACCTCCTCCGGTTAAATCTCCTCCACCTCCTTATGAATATAAATCA 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 GAGTATAAATCTCCACCTCCTCCGGTTAAATCTCCTCCACCGCCTTATGAATATAAATCA 180
Query 181 CCACCACCTCCGGTTAAGTCTCCTCCACCACCGTATTACTATCATTCACCGCCGCCGCCA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCACCACCTCCGGTTAAGTCTCCTCCACCACCGTATTACTATCATTCACCGCCGCCGCCA 240
Query 241 GTGAAATCCCCTCCCCCTCCTTATGTTTACAGCTCTCCTCCTCCTCCGGTGAAATCTCCT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 241 GTGAAATCCCCTCCCCCTCCTTATGTTTACAGCTCTCCTCCTCCTCCGGTGAAGTCCCCT 300
Query 301 CCACCACCGTACTACTACCATTCACCACCTCCTCCGGTGAAGTCTCCTCCTCCCCCATAC 360
|| || || ||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 301 CCTCCCCCATACTACTACCATTCACCGCCTCCTCCGGTGAAGTCTCCTCCTCCTCCATAC 360
Query 361 tactaccattcaccacccccaccggtgaaatctccaccaccaccatactactaccattca 420
||||||||||||||||| || ||||||||||| |||||||||||||| ||||||||||||
Sbjct 361 TACTACCATTCACCACCTCCTCCGGTGAAATCCCCACCACCACCATATTACTACCATTCA 420
Query 421 ccaccTCCTCCGGTGAAATCCCCTCCACCACCATACTACTACCACTCACCACCCCCTCCG 480
||||||||||||||||||||||| |||||||||||||||||||| ||||| || |||||
Sbjct 421 CCACCTCCTCCGGTGAAATCCCCACCACCACCATACTACTACCATTCACCTCCTCCTCCT 480
Query 481 GTGAAGTCCCCTCCTCCCCCATACTACTACCATTCACCACCCCCTCCAGTCAAGTCTCCT 540
||||| || |||||||| ||||| || ||||| || ||||| ||||| || || || ||
Sbjct 481 GTGAAATCTCCTCCTCCTCCATATTATTACCACTCCCCACCTCCTCCGGTGAAATCCCCA 540
Query 541 CCTCCACCATACCATTACAGCTCACCACCACCTCCAGTCAAGTCTCCACCACCTCCCCCA 600
|| |||||||||| ||||||||| |||||||| || || || | | ||||||||
Sbjct 541 CCACCACCATACCTTTACAGCTCTCCACCACCACCGGT-AA------A--ATCTCCCCCA 591
Query 601 CCTCCCGTTTACATCTACGCTTCTCCCCCACCTCCCACACATTACTAGGCTCGTCAAATT 660
||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 592 CCTCCTGTCTACATCTACGCTTCTCCCCCACCTCCCACACATTACTAGGCTCATCAAATT 651
Query 661 CAACAACATTTCCCAATTATTCAAGTTTTCTTTTAAAAAATGAAATAAAGGAAGGGTCAA 720
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 CAACAAAATTTCCCCATTATTCAAGTTTTCTTTTAAAAAATGAAATAAAGGAAGGGTCAA 711
Query 721 AGTCAAAGAGAAGAAGAAGTGAACCAAATAAGGATCGTGGCGTGGAAATCAGAAACAAAA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 AGTCAAAGAGAAGAAGAAGTGAACCAAATAAGGATCGTGGCGTGGAAATCAGAAACAAAA 771
Query 781 CATCTATAACAACGATCCACATCACTTCCTCTTCTTCAATGTCGCTCATCTTCCACTTGT 840
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 CATCTCTAACAACGATCCACATCACTTCCTCTTCTTCAATGTCGCTCATCTTCCACTTGT 831
Query 841 GCATCATTATCTTTGCGTCTTCATCAAGTCAAATTGTTTCCAAGACCCTTTTAGATCGTA 900
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 832 GCATCATTATCTTTGCGTCTTCGTCAAGTCAAATTGTTTCCAAGACCCTTTTAGATCGTA 891
Query 901 TCATACTCTTCTTTGTTCCCTTTTGTTGTTAGGTGAAAAAA-GGGTTCTGGTAATTTAAT 959
|||||||| |||||||||||||||||||||| ||||||||| ||||| ||||||||||||
Sbjct 892 TCATACTCCTCTTTGTTCCCTTTTGTTGTTAAGTGAAAAAATGGGTTTTGGTAATTTAAT 951
Query 960 TGTTGTGCATACATTTTCTATTTTGTTATTCTTCCGTTGATGTACTGAAAGAGTTGTTAG 1019
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 952 TGTTGTGCATACATTTTCTATTTTGTTATTCTTCCGTTAATGTAATGAAAGAGTTGTTAG 1011
Query 1020 CATATAAAACAAAGTTC 1036
|||||||||||||||||
Sbjct 1012 CATATAAAACAAAGTTC 1028
Score = 339 bits (183), Expect = 4e-92
Identities = 334/407 (82%), Gaps = 10/407 (2%)
Strand=Plus/Plus
Query 103 TCTCCTCCACCACCGTACGAGTATAAATCTCCACCTCCTCCGGTTAAATCTCCTCCACCT 162
||||||||||| || || || |||||||| ||||| ||||||||||| |||||||||||
Sbjct 151 TCTCCTCCACCGCCTTATGAATATAAATCACCACCACCTCCGGTTAAGTCTCCTCCACCA 210
Query 163 CCTTATGAATATAAATCACCACCACCTCCGGTTAAGTCTCCTCCACCACCGTAT-TACTA 221
|| ||| | ||| | ||||| || || || || || || ||||| || || ||| | ||
Sbjct 211 CCGTATTACTATCATTCACCGCCGCCGCCAGTGAAATCCCCTCCCCCTCCTTATGT-TTA 269
Query 222 TCA-TTCACCGCCGCCGCCAGTGAAATCCCCTCC-CCCTCCTTATGT-TTA-CAGCTCTC 277
|| || || || || || ||||| |||||||| ||| || || | || || || |
Sbjct 270 -CAGCTCTCCTCCTCCTCCGGTGAAGTCCCCTCCTCCC-CCATA-CTACTACCA-TTCAC 325
Query 278 CTCCTCCTCCGGTGAAATCTCCTCCACCACCGTACTACTACCATTCACCACCTCCTCCGG 337
| |||||||||||||| |||||||| || || ||||||||||||||||||||||||||||
Sbjct 326 CGCCTCCTCCGGTGAAGTCTCCTCCTCCTCCATACTACTACCATTCACCACCTCCTCCGG 385
Query 338 TGAAGTCTCCTCCTCCCCCATACtactaccattcaccacccccaccggtgaaatctccac 397
|||| || || || || ||||| ||||||||||||||||| || ||||||||||| ||||
Sbjct 386 TGAAATCCCCACCACCACCATATTACTACCATTCACCACCTCCTCCGGTGAAATCCCCAC 445
Query 398 caccaccatactactaccattcaccaccTCCTCCGGTGAAATCCCCTCCACCACCATACT 457
||||||||||||||||||||||||| |||||||| |||||||| ||||| || ||||| |
Sbjct 446 CACCACCATACTACTACCATTCACCTCCTCCTCCTGTGAAATCTCCTCCTCCTCCATATT 505
Query 458 ACTACCACTCACCACCCCCTCCGGTGAAGTCCCCTCCTCCCCCATAC 504
| |||||||| ||||| ||||||||||| ||||| || || ||||||
Sbjct 506 ATTACCACTCCCCACCTCCTCCGGTGAAATCCCCACCACCACCATAC 552
Score = 298 bits (161), Expect = 7e-80
Identities = 318/394 (81%), Gaps = 9/394 (2%)
Strand=Plus/Plus
Query 103 TCTCCTCCACCACCGTACGAGTATAAATCTCCACCTCCTCCGGTTAAATCTCCTCCACCT 162
||||||||||||||||| | ||| | || || || || || || ||||| ||||| |||
Sbjct 199 TCTCCTCCACCACCGTATTACTATCATTCACCGCCGCCGCCAGTGAAATCCCCTCCCCCT 258
Query 163 CCTTATGAATATAAATCACCACCACCTCCGGTTAAGTCTCCTCCACCACCGTATTACTAT 222
||||||| || | || || || |||||||| ||||| ||||| || || || |||||
Sbjct 259 CCTTATGTTTACAGCTCTCCTCCTCCTCCGGTGAAGTCCCCTCCTCCCCCATACTACTAC 318
Query 223 CATTCACCGCCGCCGCCAGTGAAATCCCCTCCCCCTCCTTATGT-TTA-CAGCTCTCCTC 280
||||||||||| || || ||||| || ||||| ||||| || | || || || || |
Sbjct 319 CATTCACCGCCTCCTCCGGTGAAGTCTCCTCCTCCTCCATA-CTACTACCA-TTCACCAC 376
Query 281 CTCCTCCGGTGAAATCTCCTCCACCACCGTACTACTACCATTCACCACCTCCTCCGGTGA 340
|||||||||||||||| || |||||||| || ||||||||||||||||||||||||||||
Sbjct 377 CTCCTCCGGTGAAATCCCCACCACCACCATATTACTACCATTCACCACCTCCTCCGGTGA 436
Query 341 AGTCTCCTCCTCCCCCATACtactaccattcaccacccccaccggtgaaatctccaccac 400
| || || || || |||||||||||||||||||| || || || ||||||||||| || |
Sbjct 437 AATCCCCACCACCACCATACTACTACCATTCACCTCCTCCTCCTGTGAAATCTCCTCCTC 496
Query 401 caccatactactaccattcaccaccTCCTCCGGTGAAATCCCCTCCACCACCATAC-TAC 459
| ||||| || ||||| || ||||||||||||||||||||||| |||||||||||| |
Sbjct 497 CTCCATATTATTACCACTCCCCACCTCCTCCGGTGAAATCCCCACCACCACCATACCTT- 555
Query 460 TACCA-CTCACCACCCCCTCCGGTGAAGTC-CCC 491
||| | ||| ||||| || ||||| || || |||
Sbjct 556 TAC-AGCTCTCCACCACCACCGGTAAAATCTCCC 588
Score = 237 bits (128), Expect = 2e-61
Identities = 247/304 (81%), Gaps = 10/304 (3%)
Strand=Plus/Plus
Query 295 TCTCCTCCACCACCGTACT-ACTACCATTCACCACCTCCTCCGGTGAAGTCTCCTCCTCC 353
||||||||||||||||| | | || | || |||||||||||||| || |||||||| ||
Sbjct 103 TCTCCTCCACCACCGTA-TGAGTATAAATCTCCACCTCCTCCGGTTAAATCTCCTCCACC 161
Query 354 CCCATACt-actaccattcaccacccccaccggtgaaatctccaccaccaccatactact 412
|| || | | || | |||||||| || ||||| || ||||| |||||||| || ||||
Sbjct 162 GCCTTA-TGAATATAAATCACCACCACCTCCGGTTAAGTCTCCTCCACCACCGTATTACT 220
Query 413 accattcaccaccTCCTCCGGTGAAATCCCCTCCACCACCATACT-ACTACCA-CTCACC 470
| |||||||| || || || |||||||||||||| || || || | || || ||| ||
Sbjct 221 ATCATTCACCGCCGCCGCCAGTGAAATCCCCTCCCCCTCCTTA-TGTTTA-CAGCTCTCC 278
Query 471 ACCCCCTCCGGTGAAGTCCCCTCCTCCCCCATACTACTACCATTCACCACCCCCTCCAGT 530
|| |||||||||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 279 TCCTCCTCCGGTGAAGTCCCCTCCTCCCCCATACTACTACCATTCACCGCCTCCTCCGGT 338
Query 531 CAAGTCTCCTCCTCCACCATACCATTAC-AGCTCACCACCACCTCCAGTCAAGTCTCCAC 589
|||||||||||||| |||||| | ||| | |||||||| ||||| || || || ||||
Sbjct 339 GAAGTCTCCTCCTCCTCCATACTACTACCAT-TCACCACCTCCTCCGGTGAAATCCCCAC 397
Query 590 CACC 593
||||
Sbjct 398 CACC 401
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50786722617
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5