BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483427
Length=1763
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43210.1 | Symbols: | Ubiquitin-like superfamily protein | ... 2545 0.0
> AT2G43210.1 | Symbols: | Ubiquitin-like superfamily protein
| chr2:17960711-17963727 FORWARD LENGTH=1854
Length=1854
Score = 2545 bits (1378), Expect = 0.0
Identities = 1648/1776 (93%), Gaps = 28/1776 (2%)
Strand=Plus/Plus
Query 12 GGTGGCGTTTAGTCGTTAATCGGCGTCTGATCTACCCGAAGCTTCTTCGTTCTTGAGCAG 71
||||||||| ||||||||| | ||||||||||||| || ||||||||||||||| ||||
Sbjct 1 GGTGGCGTTAAGTCGTTAA-CTGCGTCTGATCTACTCGTAGCTTCTTCGTTCTTCAGCAT 59
Query 72 TTGATC-G-G-A-T---C--------T-----ATGGAAGCTCTGTCTTCTCTTACGTTCA 111
|||||| | | | | | | ||||||||||||||||||||||||||||
Sbjct 60 TTGATCGGAGTAGTGACCTTTTTGATTGACAGATGGAAGCTCTGTCTTCTCTTACGTTCA 119
Query 112 AGGGTTCTGTTCCGGAAGCCATATTTGAAGCCAAAGGGCAGAAGAAGCTTTTTGTTGTCT 171
|||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 120 AGGGTTCTCTTCCAGAAGCCATATTTGAAGCCAAAGGGAAGAAGAAGCTTTTTGTTGTCT 179
Query 172 ACATCTCTGGAGAGGATGAAGAGTCAGATAAGTTGAACAGATTGACTTGGACTGATGCAT 231
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 180 ACATTTCTGGAGAGGATGAAGAGTCGGATAAGTTGAACAGATTGACTTGGACTGATGCAT 239
Query 232 CGGTGGCAGAGTCGCTGTCGAAGTATTGTATTTTAGTGCATATTCAAGCTGGAAGTGTTG 291
|||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 240 CGGTGGCAGATTCGTTGTCGAAGTATTGTATTTTAGTGCATATCCAAGCTGGAAGTGTTG 299
Query 292 ACGCCACAAACTTCTCCGCAATATACCCATATTCATCTGTTCCTTGTATAGCTGCCATTG 351
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ACGCCACAAACTTCTCTGCAATATACCCATATTCATCTGTTCCTTGTATAGCTGCCATTG 359
Query 352 GATTCAGTGGTACACAAGTTTGGAAAAATGAAGGATTTATCGCTGCTGAAGACATTGCAT 411
|||||||||||||||||||||||| || |||||||||||| ||||||||||| ||||||
Sbjct 360 GATTCAGTGGTACACAAGTTTGGAGAACCGAAGGATTTATCACTGCTGAAGACCTTGCAT 419
Query 412 CCAGTTTAGAGAAGGCGTGGTTAGGACTTCATATCCAGGAAACAACTGCAAGTATCTTTT 471
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CCAGTTTAGAGAAAGCGTGGTTAGGACTTCATATCCAGGAAACAACTGCAAGTATCTTTT 479
Query 472 CAGCAGCACTTGCATCACAGAACTCAGAGAAACCTGCTTCTAGTGCTTCAAATGTTGTCT 531
|||||||||||||||||||||||||||||| ||||| |||||||||||| | ||||||||
Sbjct 480 CAGCAGCACTTGCATCACAGAACTCAGAGACACCTGTTTCTAGTGCTTCGAGTGTTGTCT 539
Query 532 TGCCTTCTGAAAGTGGTCCTTTAGATGCACCGGTTGCATCTCCATCGACGGCCTCTAGTG 591
||||| | | ||||| ||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 540 TGCCTCCCGGAAGTGTTCCTTTAGATGCAGCGGTTGCATCTCCATCGACGGCTTCTAGTG 599
Query 592 TTCAACCCTCAGAGACAAAGTCAACGGTGACATCTGCATCAACAAAAGAAAACAATGATG 651
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 600 TTCAACCCTCAGAGACAAAGTCAACGGTAACATCTGCATCAACAACAGAAAACAATGATG 659
Query 652 GCACAGTTGCAGTTAAGGGCAAAGAATCTGCCGAACCTAGTAATTTGTGTGATACTACTA 711
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 660 GCACAGTTGCAGTTAAGGGCAAAGAATCTGCTGAACCCAGTAATTTGTGTGATACTACTA 719
Query 712 AAAACCAGCCAGCACCCTCTGTTGATGGAACTAAGGCCAATGTTGAACATGAAGCGACAG 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AAAACCAGCCAGCACCCTCTGTTGATGGAACTAAGGCCAATGTTGAACATGAAGCGACAG 779
Query 772 GGGCCCCTTCGCATGTTCAGGCAGAAAAGGAGCCAATTCGTCCTGCAGCCCCAGGAACAA 831
| |||||| || ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 780 AGACCCCTTTGCGTGTTCAGGCAGAAAAGGAGCCAATTCGTCCTACAGCCCCAGGAACAA 839
Query 832 ATGATAATGCATCCAGCGTTCGATCTTCTGTTGATAGTAAAAGGAAAAAAGGAACTGTGA 891
|||||||| ||||||| |||||||||||||||||||| ||||||||| | ||||||||||
Sbjct 840 ATGATAATACATCCAGGGTTCGATCTTCTGTTGATAGAAAAAGGAAACAGGGAACTGTGA 899
Query 892 TAAACAAAGATGATAGTGGTCTAGGTGTTAGTGAAAGGGACATTAATTTAACAAAATCTG 951
|||| |||| ||||||||| |||||||||||| ||||||||||||| ||||||||||||
Sbjct 900 TAAATGAAGAGGATAGTGGTGTAGGTGTTAGTGGAAGGGACATTAATCTAACAAAATCTG 959
Query 952 TTGGTACAGAAGAGGTCATGAAGCCAAAGGATGAAGGAGGAGAGGAAGAGGTTGGAGAAA 1011
| | |||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 960 TCGATACAAAAGAGACCATGAAGCCAAAGGATGAAGGAGGAGAGGAAGAGGATGGAGAAA 1019
Query 1012 AATCC-AAAAAGTCATCTGATGTTCATTTAAACATTCGATTGCCTGATGGTAGTAGCCTT 1070
||||| |||||| ||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1020 AATCCAAAAAAG-CATCTGACGTTCATTTAAACATTCGATTACCTGATGGTAGTAGCCTT 1078
Query 1071 CAGGAGAAGTTTTCTGTGACAAGTATATTGAGAATGGTCAAGGATTATGTGAACAGTAAT 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 CAGGAGAAGTTTTCTGTGACAAGTATATTGAGAATGGTCAAGGATTATGTGAACAGTAAT 1138
Query 1131 CAAACAATCGGACTGGGTGCTTATGATCTTGCGGTTCCTTACCCACGTAAGGTGTATAGT 1190
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1139 CAAACAATCGGACTGGGTGCTTATGATCTTGCGGTTCCTTACCCACGTAAGGTGTATACT 1198
Query 1191 GACCAAGATATGGATAAGTCTCTATCGGAGTTGGGTTTGTTTGATAGACAAGCACTTGTA 1250
||||||||| |||||||||||||||| |||||| | ||||| ||||||||||||||||||
Sbjct 1199 GACCAAGATCTGGATAAGTCTCTATCCGAGTTGAGATTGTTCGATAGACAAGCACTTGTA 1258
Query 1251 GTGGTTCTGCGTAAAAGAGCAACCGTCTATCAAAGAGGACCATCTTACTCTGAGTCTAAC 1310
|| |||| ||| ||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 1259 GTAGTTCCGCGAAAAAGAGCAACCGTCTATCAAAGAGGAACATCTTACTCGGAGTCTAAC 1318
Query 1311 AACAACACAGACCCTAAT-GATGGTGGTTACTTTGCTTATGTTAGAAGAGTACTGTCTTA 1369
|||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||
Sbjct 1319 AACAACACAGACCCTAATAG-TGGCGGTTACTTTGCTTATGTTAGAAGAGTACTGTCTTA 1377
Query 1370 TGCAAACCCGTTTTCATATTTTGGCGGCGGTACTGCCAACACATCAAGCTCTGGTCCAGA 1429
||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||
Sbjct 1378 TGCAAACCCGTTTTCATATTTTGGCGGTGGTACTGCCAACGCATCAAGCTCTGTTCCAGA 1437
Query 1430 GCCTCAAAGTGGACCACAGGCGGAGCTGAGAAACAATCTGGGGCAAGG-GGGCTCCTCCT 1488
| ||||| ||||| | ||||| ||||||||||||||||||||| ||| | ||||
Sbjct 1438 ACGTCAAACAAGACCAAATACGGAGGTGAGAAACAATCTGGGGCAAGTAGGGA-CGTCCT 1496
Query 1489 TTCAAGATTCATCAGAAGGTAGGAGCAATGTTAGGAATAGGAGACCAACCACTTCTCGGA 1548
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1497 TTCAAGATCCATCAGAAGGTAGGAGCAACGTTAGGAATAGGAGACCAACCACTTCTCGGA 1556
Query 1549 TTGGAAGTAACATCCATACGCTGAATCATACTGAAGATGACGCTCCGTTTGGTGATGGAA 1608
|||||||||||||||||||| ||||||| | ||||||||| |||||||||||||||||||
Sbjct 1557 TTGGAAGTAACATCCATACGTTGAATCACAATGAAGATGAGGCTCCGTTTGGTGATGGAA 1616
Query 1609 ACGCCTTTTGGAACGGAAACTCCACACAGTACGGTGGTGGAAGCGGTGGAGACAGTAATG 1668
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 ACGCTTTTTGGAACGGAAACTCCACACAGTACGGTGGTGGAAGCGGTGGAGACAGTAATG 1676
Query 1669 ATAGGCGATGAAATGAGAGAACTTGAAATCTGTGTGGATAGATACAGAAACAGCTCTGA- 1727
|||| ||||||||| |||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1677 ATAGACGATGAAATAAGAGAAGTTGAAATCTGTGTGGATAGATACAGAAACAGCTCGGGT 1736
Query 1728 GTTTACTTGTTATACTTTACTCTTTATGAACCATTT 1763
|||||||| |||||||| ||||||||||||||||||
Sbjct 1737 GTTTACTTTTTATACTTGACTCTTTATGAACCATTT 1772
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87198346665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5