BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483429
Length=1563
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43230.2 | Symbols: | Protein kinase superfamily protein | ... 2132 0.0
AT3G59350.1 | Symbols: | Protein kinase superfamily protein | ... 1092 0.0
> AT2G43230.2 | Symbols: | Protein kinase superfamily protein
| chr2:17966251-17968635 FORWARD LENGTH=1736
Length=1736
Score = 2132 bits (1154), Expect = 0.0
Identities = 1296/1365 (95%), Gaps = 8/1365 (1%)
Strand=Plus/Plus
Query 204 GGCGAATGATCGTACACAAAGCAACTTTGTTCGATTGGATAAACCGAGAGCTGTAGACGA 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GGCGAATGATCGTACACAAAGCAACTTTGTTCGATTGGATAAACCGAGAGCTGTAGACGA 418
Query 264 TATTGACATAGGCAAGAGAGGGAAGATGCGTAGGTGGTTGTGCTGTTCTTGTCGTGTACA 323
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TCTTGATATAGGCAAGAGAGGGAAGATGCGTAGGTGGTTGTGCTGTTCTTGTCGTGTACA 478
Query 324 AGAATCTTACCCAACAGCTGAACATAACCGCTTGAAAACCCCTCCTACTCGCCATTACGA 383
||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 479 AGAATCTTACCCATCAGCTGAAAATAACCGATTGAAAACCCCTCCTACTCGCCATTACGA 538
Query 384 CTATGGACGTAACAACAAGAAAACACCAGCTCCTGTGAAGCCTCCTGTCTTGAAGGAGCC 443
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 539 CTATGGACGTAACAACAAGAAAACACCAGCTCCTGTGAAGCCTCCTGTTTTGAAGGAGCC 598
Query 444 TCCTCCCATCGACGTCCCTGCAATGTCATTGGTTGAGCTCAAAGAAAAGACTCAGAATTT 503
||| || || || ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TCCGCCTATTGATGTCCCCGCAATGTCATTGGTTGAGCTCAAAGAAAAGACTCAGAATTT 658
Query 504 TGGATCAAAGGCATTGATTGGAGAAGGATCCTATGGAAGAGTGTACTATGCAAACTTTAA 563
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 659 TGGATCAAAGGCATTGATTGGAGAAGGATCCTATGGAAGAGTGTACTACGCAAACTTTAA 718
Query 564 TGATGGAAAGGCCGTGGCTGTGAAAAAGCTCGATAATTCATCTGAACCTGAAACAAATGT 623
|||||| ||||||||||||||||||||||| |||||| |||||||||| |||||||||||
Sbjct 719 TGATGGGAAGGCCGTGGCTGTGAAAAAGCTTGATAATGCATCTGAACCCGAAACAAATGT 778
Query 624 CGAGTTCTTGACTCAGGTCTCGAAAGTTTCGAGGCTGAAAAGTGACAATTTTGTTCAGCT 683
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 779 CGAGTTCTTGACTCAGGTCTCTAAAGTTTCGAGGCTGAAAAGTGACAATTTTGTTCAGCT 838
Query 684 TCTTGGTTATTGTGTAGAAGGAAACCTTCGTGTCCTTGCATATGAGTTTGCTACTATGGG 743
||||||||||||||||||||| ||||||||||||||||| ||||||||||| || ||| |
Sbjct 839 TCTTGGTTATTGTGTAGAAGGGAACCTTCGTGTCCTTGCTTATGAGTTTGCCACAATGAG 898
Query 744 ATCTTTACATGACATCTTACACGGGAGAAAGGGAGTGCAAGGAGCACAACCTGGTCCAAC 803
||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 ATCATTGCACGACATCTTACACGGGAGAAAGGGAGTGCAAGGAGCACAACCTGGTCCAAC 958
Query 804 ACTTGAGTGGATGCAACGAGTCCGAGTTGCGGTTGATGCAGCTAAAGGACTAGAATACTT 863
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 959 ACTTGAGTGGATGCAACGAGTCCGAGTTGCGGTTGATGCAGCTAAAGGATTAGAATACTT 1018
Query 864 ACACGAGAAAGTACAACCTCCGGTTATACACAGAGATATCCGATCTAGCAATGTGCTTAT 923
|||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1019 ACACGAGAAAGTTCAACCTGCGGTTATACACAGAGATATTCGATCTAGCAATGTGCTTAT 1078
Query 924 TTTCGAAGATTTCAAAGCCAAGATTGCTGATTTTAATCTTTCTAATCAAGCTCCTGATAT 983
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1079 TTTCGAAGATTTCAAAGCCAAGATTGCTGACTTTAATCTTTCCAATCAAGCTCCTGATAT 1138
Query 984 GGCTGCTCGTCTTCATTCCACTAGAGTTTTGGGGACATTCGGTTATCACGCACCAGAATA 1043
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1139 GGCTGCTCGTCTTCATTCCACTAGAGTTTTGGGGACCTTCGGTTATCATGCACCAGAATA 1198
Query 1044 TGCGATGACAGGACAGTTGACACAGAAGAGTGATGTTTACAGTTTTGGAGTTGTGCTTTT 1103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TGCGATGACAGGACAGTTGACACAGAAGAGTGATGTTTACAGTTTTGGAGTTGTGCTTTT 1258
Query 1104 GGAGCTTCTTACCGGGAGAAAACCGGTAGATCATACGATGCCTCGTGGTCAACAGAGTCT 1163
||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1259 GGAACTTCTTACCGGGAGAAAACCGGTTGATCATACTATGCCTCGTGGTCAACAGAGTCT 1318
Query 1164 TGTCACTTGGGCTACTCCAAGGCTGAGTGAAGACAAAGTGAAGCAATGTGTAGATCCAAA 1223
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1319 TGTCACTTGGGCTACTCCAAGGCTGAGTGAAGACAAAGTGAAACAATGTGTTGATCCAAA 1378
Query 1224 ACTCAAAGGAGAGTATCCTCCTAAAGCTGTTGCAAAGCTCGCGGCGGTTGCAGCGTTGTG 1283
||||||||||||||||||||||||||| || |||||||| || |||||||||||||||||
Sbjct 1379 ACTCAAAGGAGAGTATCCTCCTAAAGCAGTGGCAAAGCTTGCAGCGGTTGCAGCGTTGTG 1438
Query 1284 TGTGCAATACGAAGCAGAGTTTAGGCCAAACATGAGCATTGTAGTAAAAGCTCTTCAACC 1343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 TGTGCAATACGAAGCAGAGTTTAGGCCAAACATGAGCATTGTAGTAAAAGCTCTTCAACC 1498
Query 1344 GCTCTTAAGGTCAGCAACAGCTGTTGCTCCTCCAACACATCAAGCTTGATTCTTCTTTGT 1403
|||||| |||||||||||||||| |||||||||||||| |||| ||||||||||||||||
Sbjct 1499 GCTCTTGAGGTCAGCAACAGCTGCTGCTCCTCCAACACCTCAACCTTGATTCTTCTTTGT 1558
Query 1404 GGTTCTTGCATACTGATTATCTTAAGGCTTCAAGGTTTTTTCTTTACTTTAATCTGTCTA 1463
||||||||| ||||||||||| | |||||||||||||| |||| |||||| ||| ||||
Sbjct 1559 GGTTCTTGCTTACTGATTATCAT--GGCTTCAAGGTTTTGTCTTCACTTTATTCTTTCTA 1616
Query 1464 TTTACCATGGAATGTAAATGGGTTATCAAGGAGAGATGGTGAGTAGCAATTGGGATTTCA 1523
| ||||||||||||||||||| |||| |||| ||| ||||||| ||||||||||||||||
Sbjct 1617 TCTACCATGGAATGTAAATGG-TTATTAAGGGGAGGTGGTGAGGAGCAATTGGGATTTCA 1675
Query 1524 CTCTATGGAAATGATTTGTGCTA--T--TTTT-GATGGGTTAATT 1563
||| ||||||||||| |||| || | |||| |||||||| |||
Sbjct 1676 CTCCATGGAAATGATCTGTGTTAACTGCTTTTTGATGGGTTGATT 1720
Score = 303 bits (164), Expect = 2e-81
Identities = 193/206 (94%), Gaps = 5/206 (2%)
Strand=Plus/Plus
Query 1 GTAGTTATTTGGGATTCC-CAtttttttCATTCCTAAATTACTCCACGACCTCATCACCT 59
|||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||
Sbjct 57 GTAGTTATTTGGGATTCCAAATTTTTTTCATTCCTAAATTTCTCCACGAGCTCATCACCT 116
Query 60 CCTTTCGTCCCTGCCTCTCATTTGTCTACCAGCAttttttctttttGATTCGTCTCTCTG 119
||||||||| ||||||||||||||||||| | ||||||||| ||||||||||||||||||
Sbjct 117 CCTTTCGTCTCTGCCTCTCATTTGTCTACAAACATTTTTTCCTTTTGATTCGTCTCTCTG 176
Query 120 GTTTATTGCTCGTTGATCGTTTGTTTCTAAATTGCATTTTGATTTCTGATATATGGATCG 179
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 177 GTTTATTGCTCGTTGATCGTTTGTTTCTAAATTGCATTCTGATTTCTGAT----GGATCG 232
Query 180 TGATTTTCATCGTCGTGGTCAAGTGG 205
||||||||||||||||||||||||||
Sbjct 233 TGATTTTCATCGTCGTGGTCAAGTGG 258
> AT3G59350.1 | Symbols: | Protein kinase superfamily protein
| chr3:21932685-21935192 FORWARD LENGTH=1781
Length=1781
Score = 1092 bits (591), Expect = 0.0
Identities = 1010/1210 (83%), Gaps = 37/1210 (3%)
Strand=Plus/Plus
Query 172 ATGGA-TCGTGATTTTCATCGTCGTGGTCAAGTGGCGAATGATCGTACACAAAGC-AACT 229
||||| || ||||| ||||| ||||||| ||||| || |||||| ||| ||| | |
Sbjct 255 ATGGATTC-TGATTACCATCGCCGTGGTCTGGTGGCAAACGATCGTTCAC-CAGCTCAGT 312
Query 230 TTGTTCGATTGGATAAACCGAGAGCTGTAGACGATAT-TGACATAGGCAAGAGAGGGAAG 288
||||| | |||||||||||||||| ||||||||| | | | ||||||||||||| |||
Sbjct 313 TTGTTAGGCTGGATAAACCGAGAGCCGTAGACGATCTCT-ATATAGGCAAGAGAGAAAAG 371
Query 289 ATGCGTAGGTGGTTGTGCTGTTCTTGTCGTGTACAAGAATCTTACCCA-ACAGCTGAACA 347
||||||||||||||||||||| |||| | || ||||| |||| ||| | ||||| |
Sbjct 372 ATGCGTAGGTGGTTGTGCTGTGCTTGCCACGTTGAAGAACCTTA-CCATTCTTCTGAAAA 430
Query 348 T-AACCGCTTGAAAACCCCTCCTACTCGCCATTACGACTATGGACGTAACAACAAGAAAA 406
| || | | | | || | |||| | ||| | || | ||| | | || || ||||||
Sbjct 431 TGAA-CACCTCAGAA--GC-CCTAAGCACCACAATGATTTTGGGCATCAC-ACTAGAAAA 485
Query 407 -CACCA-GCTCCTGTGAAGCCTCCTGTC-TTGAAGGAGCCTCC-TCCCATCGACGTCCCT 462
|| || || ||||||||||| || | |||||||||||||| | | || || || |||
Sbjct 486 CCA-CAGGCGGCTGTGAAGCCTGATG-CTTTGAAGGAGCCTCCAT-CTATTGATGTGCCT 542
Query 463 GCAATGTCATTGGTTGAGCTCAAAGAAAAGACTC-AGAATTTTGGATCAAAGGCATTGAT 521
||| ||||||||| |||| | ||||||||||| | | || |||||||||||| |||||||
Sbjct 543 GCATTGTCATTGGATGAGTTGAAAGAAAAGAC-CGATAACTTTGGATCAAAGTCATTGAT 601
Query 522 TGGAGAAGGATCCTATGGAAGAGTGTACTATGCAAACTTTAATGATGGAAAGGCCGTGGC 581
||| |||||||| || || |||| || ||||||| ||| || ||||||||||| || ||
Sbjct 602 TGGTGAAGGATCTTACGGCAGAGCCTATTATGCAACCTTGAAAGATGGAAAGGCTGTCGC 661
Query 582 TGTGAAAAAGCTCGATAATTCATCTGAACCTGAAACAAATGTCGAGTTCTTGACTCAGGT 641
||||| ||||| || ||| || | ||||||||| ||||||| |||||||||||||||||
Sbjct 662 GGTGAAGAAGCTTGACAATGCAGCGGAACCTGAATCAAATGTTGAGTTCTTGACTCAGGT 721
Query 642 CTCGAAAGTTTCGAGGCTGAA-AAGTGACAATTTTGTTCAGCTTCTT-GGTTATTGTGTA 699
||| | ||||| | |||||| | || ||||||||| ||| |||| |||||||||||
Sbjct 722 CTCTAGGGTTTCCAAGCTGAAGCA-CGATAATTTTGTTGAGC-TCTTCGGTTATTGTGTT 779
Query 700 GAAGGAAACCTT-CGTGTCCTTGCATATGAGTTTGCTACTATGGGATCTTTACATGACAT 758
||||| || || || | ||||| |||||||||||||||||||||||||||||||||||
Sbjct 780 GAAGGGAA-TTTCCGCATTCTTGCGTATGAGTTTGCTACTATGGGATCTTTACATGACAT 838
Query 759 CTTACACGGGAG-AAAGGGAGTGCAAGGAGCACAACCTGGTCCAACACTTGAGTGGATGC 817
|||||||||||| ||||| ||| |||||||||||||| ||||| || ||||| ||||| |
Sbjct 839 CTTACACGGGAGGAAAGG-AGTCCAAGGAGCACAACCAGGTCCTACGCTTGACTGGATCC 897
Query 818 AACGAGTCCGAGTTGCGGTTGATGCAGCTAAAGGACTAGAATACTTACACGAGAAAGTAC 877
|||| ||| || | || ||||||||||||| |||||| || || || || |||||||| |
Sbjct 898 AACGGGTCAGAATAGCAGTTGATGCAGCTAGAGGACTTGAGTATTTGCATGAGAAAGTTC 957
Query 878 AACCTCCGGTTATACACAGAGATATCCGATCTAGCAATGTGCTTAT-TTTCGAAGATTTC 936
||||| | || |||||||||||||| |||||||||||||||||| | ||| ||||||||
Sbjct 958 AACCTGCAGTAATACACAGAGATATTCGATCTAGCAATGTGCTTCTCTTT-GAAGATTTT 1016
Query 937 AAAGCCAAGATTGCTGATTTTAATCTTTCTAATCAAGCTCCTGATATGGCTGCTCGTCTT 996
||||||||||| |||||||||||||| || || ||| |||||||||||||||||||||||
Sbjct 1017 AAAGCCAAGATCGCTGATTTTAATCTATCGAACCAATCTCCTGATATGGCTGCTCGTCTT 1076
Query 997 CATTCCACTAGAGTTTTGGGGACATTCGGTTATCACGCACCAGAATATGCGATGACAGGA 1056
||||| || ||||||||||| || |||||||| ||||||||||| ||||||||||| ||
Sbjct 1077 CATTCTACCAGAGTTTTGGGAACCTTCGGTTACCACGCACCAGAGTATGCGATGACTGGT 1136
Query 1057 CAGTTGACACAGAAGAGTGATGTTTACAGTTTTGGAGTTGTGCTTTTGGAGCTTCTT-AC 1115
|| |||||||||||||||||||||| |||||||| || |||||||||||||| ||| ||
Sbjct 1137 CAACTGACACAGAAGAGTGATGTTTATAGTTTTGGTGTGGTGCTTTTGGAGCT-CTTGAC 1195
Query 1116 CGGGAGAAAACCGGTAGATCATACGATGCCTCGTGGTCAACAGAGTCTTGTCACTTGGGC 1175
|| || ||||| || |||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1196 TGGTAGGAAACCCGTCGATCATACGATGCCTCGTGGTCAACAAAGTCTTGTTACTTGGGC 1255
Query 1176 TACTCCAAGGCTGAGTGAAGACAAAGTGAAGCAATGTGTAGATCCAAAACTCAAAGG-AG 1234
|||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 1256 TACTCCAAGGCTAAGTGAAGACAAAGTGAAGCAATGTGTTGATCCAAAACT-AAAGGGAG 1314
Query 1235 AGTATCCTCCTAAAGCTGTTGCAAAGCTCGCGGCGGTTGCAGCGTTGTGTGTGCAATACG 1294
| ||||||||||||||||||||||||||||| || || ||||| |||||||||||||| |
Sbjct 1315 AATATCCTCCTAAAGCTGTTGCAAAGCTCGCTGCAGTAGCAGCATTGTGTGTGCAATATG 1374
Query 1295 AAGCAGAGTTTAGGCCAAACATGAGCATTGTAGTAAAAGCTCTTCAACCGCTCTTAAGGT 1354
|| |||||||||||||||||||||||||||| ||||||||||||||||| | || ||||
Sbjct 1375 AATCAGAGTTTAGGCCAAACATGAGCATTGTGGTAAAAGCTCTTCAACCATTGTTGAGGT 1434
Query 1355 CAGCAACAGC 1364
|| |||||||
Sbjct 1435 CATCAACAGC 1444
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77158237665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5