BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483433
Length=2365
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43250.1 | Symbols: | unknown protein; Has 32 Blast hits to... 3618 0.0
> AT2G43250.1 | Symbols: | unknown protein; Has 32 Blast hits
to 32 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr2:17977228-17979608 FORWARD
LENGTH=2381
Length=2381
Score = 3618 bits (1959), Expect = 0.0
Identities = 2249/2386 (94%), Gaps = 31/2386 (1%)
Strand=Plus/Plus
Query 1 TGTTTCATCGACCAAAAAGGACAGAGAAAAGAATTGAAGAATCCATTACTGGGTTCGAAC 60
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 6 TGTTTCATCGACCAAAAAGGACACAGAGAAGAATTGAAGAATCCATTACTGGGTTCGAAC 65
Query 61 CATC------G------A--GGAACCCTAATCTCGAAATCAGTGTATGTGTTTCCTCCGT 106
|||| | | ||||||||||||||||||||||||||||| |||||||||
Sbjct 66 CATCGAATTTGATACTAATCGGAACCCTAATCTCGAAATCAGTGTATGTCCTTCCTCCGT 125
Query 107 CTGCTGTGATTCTCAATTTCTCGGTTGGTCTTTTTAGATTCTTTCTCCATCGGTCTTTGT 166
|||||||||||||||||||| |||||||| |||||| ||||| |||||||||| ||||||
Sbjct 126 CTGCTGTGATTCTCAATTTCCCGGTTGGTTTTTTTAAATTCTCTCTCCATCGGCCTTTGT 185
Query 167 TGATTCATCTGAGTGCTTGTTTTGATCGTC-AATTTCGATT-TAAGTAGAGAAGAAATTG 224
||||||||||| ||||| ||||||||| || || ||||||| |||||||| | |||||||
Sbjct 186 TGATTCATCTGTGTGCTCGTTTTGATCTTCAAAATTCGATTATAAGTAGATACGAAATTG 245
Query 225 CTTGCATGATTCAGTAGGTC-AATAGCTTTATCTATGCCCAGCTCTATTGAATTCGATAG 283
| |||||||||||||| | | ||| |||||||||||||||||||| |||||||||
Sbjct 246 CCTGCATGATTCAGTA-GACGAATTGCTTTATCTATGCCCAGCTCGATTGAATTC----- 299
Query 284 AAGACTAAAG-GTTTTCTCGGATTCGTTTGGTTTGCCGTGGAGGGCTCGGTTTACTGAGG 342
|| || ||| |||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 300 AA-TCT-AAGTGTTTTCTCGGATTCGTTTGGTTTGCCTTGGAGGGCTTGGTTTACTGAGG 357
Query 343 TTGAAAGTCTCTGTCTTTGGAGTCGAATTCGATAATGGTGGCAtttttttttGCGAATAG 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TTGAAAGTCTCTGTCTTTGGAGTCGAATTCGATAATGGTGGCATTTTTTTTTGCGAATAG 417
Query 403 TCTGCAAAATATATGGCCCTTTTCAATTTTTGTAAGCAGTGACTTGAAGGAATCAAAGGA 462
||| |||||||||||||||||||| |||||| || ||||||||||||||||||||||||
Sbjct 418 TCTTCAAAATATATGGCCCTTTTCGATTTTTCAAAACAGTGACTTGAAGGAATCAAAGGA 477
Query 463 ACTTGTTCATAGACTTTCATTGCCTGAGAGTACAAAGAACTTTGTTTTTGCTATTAGAGT 522
||||||||||||||||| || || |||||||||||||||||||| ||||||||||||||
Sbjct 478 GCTTGTTCATAGACTTTCGTTACCAGAGAGTACAAAGAACTTTGTGTTTGCTATTAGAGT 537
Query 523 TCCTGAGCATGATTCAACTATTTACATACTTGCTGCTCAGAATTTATCCGAGAGATCTGC 582
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 538 TCCTGAGCATGATTCAACTATTTACATACTTGCTGCTCAGAATTTATCAGAGAGATCTGC 597
Query 583 TAGTGATGCCGAGTGCCTTATACGGGAAATTCGTCCTGGTGCTGTTGTGGCTCAAGTGGA 642
||||||||| ||||| |||||||| ||||||||||||||||| || || |||||||||||
Sbjct 598 TAGTGATGCTGAGTGTCTTATACGAGAAATTCGTCCTGGTGCGGTAGTTGCTCAAGTGGA 657
Query 643 CAAAACAGCTTTTGGGGAAGCTCAAGTTGAAGAGAGTGTATTAGGAGAT-GGCTCTAGTG 701
|||| ||||||||||||||||||||||||||||||||||||||||| || || | |||||
Sbjct 658 CAAATCAGCTTTTGGGGAAGCTCAAGTTGAAGAGAGTGTATTAGGAAATGGGAT-TAGTG 716
Query 702 ATTCAATCCCTACATCAGCTTTTAAAGTTCTTATACAGTGTTTTGTAGACAAGGTTAACA 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 ATTCAATCCCTACATCAGCTTTTAAAGTTCTTATACAGTGTTTTGTAGACAAGGTTAACA 776
Query 762 AAGAAAAGTATGAAGGTATTGCAGGGATTGTGGTTTTGAGGGAGATTTTTGGGACAAGTT 821
|||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 777 AAGAAAAGTATGAAAGTATTGCAGGGATTGTGGTTTTAAGGGAGATTTTCGGGACAAGTT 836
Query 822 TTAATGGTCATTTATTGGCTGCCAAAAGGGTTGCTGGGGAGGTTGGTTCGTCGTTTATGG 881
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 837 TTAATGGTCATTTATTGGCTGCCAAAAGGGTGGCTGGGGAGGTTGGTTCGTCGTTTATGG 896
Query 882 TACTAGAATCTCCTTTTGTCAATATCGCTGCCGTGGAAGATGGAGGAGGCAAGATGCAAA 941
| || |||||||||||||| |||| |||||||||||||||| |||||||||||||||||
Sbjct 897 TTCTGGAATCTCCTTTTGTTGATATTGCTGCCGTGGAAGATGCAGGAGGCAAGATGCAAA 956
Query 942 GTCTAGCTAATAGTCTCGTACCACAACTTTCTGGCTCTACTATATTTTCAAGCTCGCGAA 1001
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 957 GTCTAGCTAATAGTCTCGTACCACAACTTAATGGCTCTGCTATATTTTCAAGCTCGCGAA 1016
Query 1002 GGTTTCTGATAACCAATGATGTCCAGGCACGGATGCTGAAGTTGATATCTTTGCAGATGA 1061
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 GGTTTCTGATAACTAATGATGTCCAGGCACGGATGCTGAAGTTGATATCTTTGCAGATGA 1076
Query 1062 ATCAGGTCAATAAAGAACTTAGCCCATCAAGTTGTGTTGCAAGTGGAGTTTCCAATGAGA 1121
|||||||||||||| |||||||||||||||| |||||||||||||| |||||| |||||
Sbjct 1077 ATCAGGTCAATAAAAAACTTAGCCCATCAAGCAGTGTTGCAAGTGGAATTTCCAGTGAGA 1136
Query 1122 TACAGTCCTGTAGTCATGAGGTTCCACCATTTGCTCAATCCATTTATCCATTGCTTGTTG 1181
||||||||||||||||||| ||||| |||||||||||| |||||||||| ||||||||||
Sbjct 1137 TACAGTCCTGTAGTCATGAAGTTCCTCCATTTGCTCAAACCATTTATCCCTTGCTTGTTG 1196
Query 1182 ACCTTCATGATATATTCATTGATCTCCCATCTATTGGGAAAGCTCTAGCCAATGCCAGAA 1241
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 ACCTTCATGATATATTCAGTGATCTCCCATCTATTGGGAAAGCTCTAGCCAATGCCAGAA 1256
Query 1242 GAATGTTGTCTGATGTAAATAAAGGGGAGTCTATGGATACAGGGGTTATTTCTGAAGTTT 1301
|||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1257 GAATGTTGTCTGATGTTAATAGAGGGGAGTCTATGGATACAGAGGTTATTTCTGAAGTTT 1316
Query 1302 ACCTTTTTCAGATTGCAGTTGAAGGTCTAAGAATTGCTTTGAACAATGCTGGTCGGCTAC 1361
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1317 ACCTTTTCCAGATTGCAGTTGAAGGTCTAAGAATTGCTTTGAACAATGCTGGTCGCCTAC 1376
Query 1362 CAATCAAGAACATGGGAAGTTCAAGCCGCACTGAAGTTCAGTTTTCACAGCTCTCTTCTG 1421
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1377 CAATCAAGAACATGGGAAGTTCAAGCCGAACCGAAGTTCAGTTTTCACAGCTCTCTTCTG 1436
Query 1422 AAGACAAATCTTATGCACTTATGGCAGATCTTCTTCGTAGCCAGGCTAAAAAGTTCAAGA 1481
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1437 AAGACAAATCTTACGCACTTATGGCAGATCTTCTTCGTAACCAGGCTAAAAAGTTCAAGA 1496
Query 1482 ACATAGTAGCAGTAGTAGATGCATGTAGCCTCGCAGGTCTTAGGAAGCATTGGAAAACTT 1541
|||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1497 ACATTGTAGCAATAGTAGATGCATGTAGCCTCGCAGGTCTTAGGAAGCACTGGAAAACTT 1556
Query 1542 GTGTTCCTCAAGAAGTCAAAGATATGTCTGAGAATATGCTACAAGATTTTGATAACGACG 1601
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1557 GTGTTCCTCAAGAAGTCAAAGATATGTCTGAGTATATGCTACAAGATTTTGATAACGACG 1616
Query 1602 AGAAGACTAATGATTCAAAGTTAAAACGACTGTTATCTGATAAACCGGTTGTAGCAGTTG 1661
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1617 AGAAGACTAATGATTCAAAGTTGAAACGACTGTTATCTGATAAACCGGTGGTAGCAGTTG 1676
Query 1662 GTGCCGGTGCGACTGCTATCTGGGGTGCTTCTTCACTATCCAAGGCCATTTCTGCTTCTC 1721
|||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1677 GTGCTGGTGCAACTGCTATCTGGGGGGCTTCTTCACTATCCAAGGCCATTTCTGCTTCTC 1736
Query 1722 CTTTCTTCAAGATTGTAACTTTTAAAGTCCCGGCATCATTGAACCT-TTTTCTGACACAT 1780
|||||||||||||||||||||| |||||||||| |||||||||||| |||| ||||||||
Sbjct 1737 CTTTCTTCAAGATTGTAACTTTCAAAGTCCCGGGATCATTGAACCTCTTTT-TGACACAT 1795
Query 1781 ACCCATAAGGCACTGACATTTGCATTTACTAAAGTGGCGGTTCCATCAAAAGCAATGGCC 1840
|||||||||||| |||||||||||||||| |||||||||||||| || ||||||||||||
Sbjct 1796 ACCCATAAGGCAGTGACATTTGCATTTACCAAAGTGGCGGTTCCGTCTAAAGCAATGGCC 1855
Query 1841 CCAGGATTTGCTAGTTCTGGAGCCAAATCAACATCTTTGATAAAAGCATCTTTATCCGCC 1900
|| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1856 CCCGGTTTTGCTAGTTCTGGAGCCAAATCAACATCTTTGGTAAAAGCATCTTTATCCGCC 1915
Query 1901 GAGAAAATCAGAGCAGTAACACATAGCATTATAGCTTCTGTAGAAAAGACAAGTTTATCT 1960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1916 GAGAAAATCAGAGCAGTAACACATAGCATTATAGCTTCTGTAGAAAAGACAAGTTTATCT 1975
Query 1961 GCCATGAGAACTGCATTCTATGAGATCATGCGGAAAAGACGAGCAAAACCTATCGGTACC 2020
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1976 GCCATGAGAACTGCATTCTATGAGATCATGAGGAAAAGACGAGCAAAACCTATCGGTACC 2035
Query 2021 TTACCATTGGCGACATTTGGAGCCAGCCTTGCAACTTGTGCGGGATTGTTCGCCTATGGA 2080
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2036 TTACCATTGGTGACATTTGGAGCCAGCCTTGCAACTTGTGCGGGATTGTTCGCCTATGGA 2095
Query 2081 GATGGGATCGAATGTGCAGCTATGTCTCTTCCTTCAGCTCCTTCGATAGCAAACTTGGGT 2140
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2096 GATGGGATCGAATGTGCAGCTATGTCTCTTCCTTCAGCTCCTTCGATTGCAAACTTGGGT 2155
Query 2141 CGAGGAATTCAAAACTTACATGAGGCGTCTCTGGAAGTGAGAATGAGAGAAGGCAACAGG 2200
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2156 AGAGGGATTCAAAACTTACATGAGGCGTCTCTGGAAGTGAGAATGAGAGAAGGCAACAGG 2215
Query 2201 ATACAGAACGCAATCGAGTCCCTTAGACAAAGACTGAAGAAAGTCAAGTTTTAACGAAGA 2260
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2216 ATACAGAACGCCATCGAGTCCCTTAGACAAAGACTGAAGAAAGTAAAGTTTTAACGAAGA 2275
Query 2261 AGAGAGTATCTTTT-ATAATTTGACTTAAATCTTTCTTTTAGCTTACTGTATATATACAT 2319
| || |||| |||| ||| ||| |||||||||||| ||||||||||||||||||||||||
Sbjct 2276 ATAGGGTATATTTTTATACTTTCACTTAAATCTTTGTTTTAGCTTACTGTATATATACAT 2335
Query 2320 ACTCTCTACATGTTTCGTGTTCAGCTAATGGTTTGGTTTGCACATG 2365
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2336 ACTCTCTACATGTTTCGTGTTCAGCTAATGGTTTGGTTTGCACATG 2381
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117419074755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5