BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483435
Length=814
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43280.1 | Symbols: | Far-red impaired responsive (FAR1) fa... 1286 0.0
> AT2G43280.1 | Symbols: | Far-red impaired responsive (FAR1)
family protein | chr2:17989698-17991022 FORWARD LENGTH=823
Length=823
Score = 1286 bits (696), Expect = 0.0
Identities = 779/818 (95%), Gaps = 9/818 (1%)
Strand=Plus/Plus
Query 1 GCTCGTGCAGCCGAAGAT-CCTGCTCTGA-TCGTCAAATCCATGGAAGATGAGGATGATC 58
||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 GCTCGTGCAGCTGAAGATCCCTGCTCTGATTCGTCAAATCCATGGAAGATGAGGATGATC 60
Query 59 TAGCCACTAAGAACAGCAACAACACAGATGATTTTGCTATAGAGCCTCGTGAAGGGATTG 118
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAACCACAAAGAACAGCAACAACACAGATGATTTTGCTATAGAGCCTCGTGAAGGGATT- 119
Query 119 A-ATTTGAATCCGAGGATGCGGCTAAGATGTTCTATGATGATTACTCTAGACGTTTAGGG 177
| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 120 ATATTTGAATCCGAGGATGCAGCTAAGATGTTCTATGATGATTACTCTAGACGATTAGGG 179
Query 178 TTTGTAATGCGTGTAATGTCTTGCCGGAGATCCGAGAAAGACGGAAGAATCCTTGCCCGG 237
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 180 TTTGTAATGCGTGTAATGTCTTGCCGAAGATCCGAGAAAGACGGAAGAATTCTTGCCCGG 239
Query 238 AGATTCGGTTGTAACAAAGAAGGTCATTGTGTTAGTATCCGTGGTAAGTTTGGATCAGTT 297
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 240 AGATTCGGTTGTAACAAAGAAGGTCATTGTGTTAGTATTCGTGGTAAGTTTGGATCAGTT 299
Query 298 AGGAAACCAAGACCGAGTACAAGAGAAGGTTGCAAAGCCATGATTCATGTTAAGTATGAC 357
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 300 AGGAAACCTAGACCGAGTACAAGAGAAGGTTGCAAAGCTATGATTCATGTTAAGTATGAC 359
Query 358 CGCTCTGGCAAATGGGTCATTACCAAATTCGTCAAAGAACATAACCATCCACTAGTTGTT 417
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 360 CGGTCTGGCAAATGGGTCATTACCAAATTCGTCAAAGAACATAACCATCCACTCGTTGTT 419
Query 418 TCACCTCGCGAGGCTCGCCATACTCTGGACGAAAAGGATAAGAGAATTCAAGAACTGACG 477
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 420 TCACCTCGCGAGGCTCGCCATACCCTGGACGAGAAGGATAAGAGAATTCAAGAACTGACG 479
Query 478 ATAGAGCTGCGAAACAAGAAGCGGTTATGTGCAGCGTACAAGGAACAGCTAGATGCATTT 537
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 480 ATAGAGCTGCGAAACAAGAAGCGGTTATGTGCAGCGTACAAGGAACAGTTAGATGCTTTT 539
Query 538 GCAAAGATTGTTGAAGAGCATAGTAAACAGATAGCGAAGAAAGTTGAGAACGTAGTGAAC 597
|||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct 540 GCAAAGATTGTTGAAGAGCATAGTAATCAGATAGCAAAGAAAGTTGAGAATGTAGTGAAC 599
Query 598 AATTTGAAAGAATTCGAACCTCTAGAGCATGCGCTATTGCGAAGTAAACAAGATGCCATC 657
|||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AATTTGAAGGAGTTCGAACATCTAGAGCATGCGCTATTGCGAAGTAAACAAGATGCCATC 659
Query 658 TAAGCCAATTAT-GTATGAGTGCGGATGTATATTCTTTCAATCGGTAAAGCTTTCCCGAT 716
|||||||| ||| | ||| |||||| |||||||||||| ||| ||| |||||||||||||
Sbjct 660 TAAGCCAACTATTG-ATGTGTGCGGCTGTATATTCTTTGAATTGGTGAAGCTTTCCCGAT 718
Query 717 CGTAAATGGTTTAAGTGTAATCTAGATGTGGTTTGAATCTTATTTGTTTATGGAATGTAA 776
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 719 CGTAAATGGTTTAAGTGTAATCTAGATGTGGTTTGAATCTTATTT-T--ATGGAATGTAA 775
Query 777 TGTGAGAAACTTTGTAACCATAGAGTAGAAGAGGACAT 814
|||||| |||||||||||||||||||||||||||||||
Sbjct 776 TGTGAGGAACTTTGTAACCATAGAGTAGAAGAGGACAT 813
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39634741983
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5