BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483437
Length=587
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43310.1 | Symbols: | Ribosomal L18p/L5e family protein | c... 640 0.0
> AT2G43310.1 | Symbols: | Ribosomal L18p/L5e family protein |
chr2:17995901-17996688 FORWARD LENGTH=788
Length=788
Score = 640 bits (346), Expect = 0.0
Identities = 447/494 (90%), Gaps = 13/494 (3%)
Strand=Plus/Plus
Query 99 AACGACACGAGCGATGAATGGGACTCACCGTCATCATCTTCTTCAACTGGTCTTATCATG 158
|||||| ||| | ||||| || || ||||||||||||||||||||||| |||||||||||
Sbjct 193 AACGACCCGAACAATGAACGGAACCCACCGTCATCATCTTCTTCAACTAGTCTTATCATG 252
Query 159 CCGCAAGATCACAGCTCAAGTGACTCAACCAGGATCTTCCACGATCGTAGCCATGGCTTC 218
||| |||||||||||||||||||||||||||||||| || |||||| |||| ||||||||
Sbjct 253 CCGTAAGATCACAGCTCAAGTGACTCAACCAGGATCCTCAACGATCATAGCAATGGCTTC 312
Query 219 ATCCTCCGAACAAGAATTCCTAGTC-AAAAGCCGCGCCAATCTCTACCGATTCCCTCATT 277
||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||| |
Sbjct 313 ATCCTCCGAGCAAGAATTCCTAG-CAAAAAGCCGCGCCAATCTCTACCGATTCCCTCACT 371
Query 278 CCAACAATTTCTGGGACTCAAAGACCGCTTCACGCGTCGGCGAGAAGCTT-GGTCTACGT 336
||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 372 CCAACCATTTCTGGGACTCAAAGACCGCTTCACGCGTCGGCGAGAAGCTTGGGT-TACGT 430
Query 337 CTT-AGAGATCTCGGTGTTGACGTTGTCTCCATTGATGCAGACGAAGAGATCTCTCGACC 395
|| ||||| || ||||||||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 431 -TTAAGAGAGCTTGGTGTTGACGTAGTCTCCATTGATGCAGACGAAGAAATCTCTCGGCC 489
Query 396 CATTCAACACCGCAAAAGGGTTCTTCCGTTGTTTGATTCCGTTCGTCGTACCGGTATCAG 455
||||| || |||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 490 TATTCACCATCGCAAAAGAGTTCTTCCGTTGTTCGATTCCGTTCGTCGTACCGGTATCAG 549
Query 456 AGTCGACGGAACTGACCAATTGAACAATATCGGTGTCACAGTTATTCCCAGAAATTAGTT 515
||||||||||||||| ||||||||| |||| ||||| || ||||||||| ||| | ||
Sbjct 550 AGTCGACGGAACTGAGCAATTGAACGATATTAGTGTCCCAATTATTCCCA-AAA--A-TT 605
Query 516 AGGGTTACGAATTTGGGAttttttt-tt--GTTCGTACAGTTTCTTGTATCAGTGAGAGA 572
||||||||||||| ||| ||||||| || |||||||||||||||||||| |||||||||
Sbjct 606 AGGGTTACGAATTAGGGTTTTTTTTGTTTTGTTCGTACAGTTTCTTGTATTAGTGAGAGA 665
Query 573 TTTACAGAAACTAA 586
||||||||||||||
Sbjct 666 TTTACAGAAACTAA 679
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28231590614
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5