BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483439
Length=1512
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43320.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1546 0.0
> AT2G43320.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr2:17996650-17999927
REVERSE LENGTH=1591
Length=1591
Score = 1546 bits (837), Expect = 0.0
Identities = 951/1004 (95%), Gaps = 15/1004 (1%)
Strand=Plus/Plus
Query 513 GGAAAAGTAAGTGTTGCTGATATCATGGGGCTCTCTGGTTCAGAAACCGCT-C--TAAAA 569
|||||||||||||||||||||||||| ||||||||||| |||||||| ||| | |||||
Sbjct 504 GGAAAAGTAAGTGTTGCTGATATCATTGGGCTCTCTGGGTCAGAAACTGCTCCTTTAAAA 563
Query 570 AATGAAGGTTCTCTGAAAAGTTGGGAAAGCTCTATTGTTCTTGTTAATGTCCTTAAAAAC 629
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 564 AATGAAGGTTCTTTGAAAAGTTGGGAAAGCTCTGTTGTTCTTGTTAATGTCCTTAAAAAC 623
Query 630 GAGATCCGTGATGGACAGCTTAGCTTCAGGGGCAAAAGGGTCCTCGAGCTAGGTTGCAA- 688
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 624 GAGATCCGTGATGGACAGCTTAGCTTCAGGGGCAAAAGGGTCCTCGAGCTAGGTTGCAAC 683
Query 689 TTACGGAGTTCCTGGGATATTTGCCTGCTTGAAAGGTGCTTCCTCAGTCCACTTTCAAGA 748
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 684 TT-TGGAGTTCCTGGGATATTTGCCTGTTTGAAAGGTGCTTCCTCAGTCCACTTTCAAGA 742
Query 749 GCTCAGCGCAGAAACAATAAGATGCACAACCATCCCAAACGTTCTTGCAAACCTCGAGCA 808
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 743 CCTCAGCGCAGAAACGATAAGATGCACAACCATCCCAAACGTTCTTGCAAACCTGGAGCA 802
Query 809 AGCACGAGACAGGCAAAGCCGTCAGCCAGAAAGCCCACTCACACCATCAAGACAAGCTAT 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 AGCACGAGACAGGCAAAGCCGTCAGCCAGAAAGCCCACTCACACCATCAAGACAAGCTAT 862
Query 869 CTCTGCATCTGTCCGTTTCTATGCAGGAGAATGGGAAGAGCTCTCAACCGTTCTATCCAT 928
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 863 CTCTGCATCTGTCCGTTTCTATGCAGGAGAATGGGAAGAGCTCTCTACCGTTCTATCCAT 922
Query 929 CATTAGAACAGATGTTTTTGAACCAGCTATCCCCACAATGAACTTGAGCTTTTCAGAGGA 988
||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||
Sbjct 923 CATTAGAACAGATGTCCTTGAACCATCTATCCCCGCAATGAACTTGAGCTTTTCAGAGGA 982
Query 989 AGATTTCATGGATGGATGTAGCAGCCAAGACGGAAGCATTACAGGACAGCAAGATTTCTC 1048
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 983 AGATTTCATGGATGGATGTAGCAGCCAAGACGGAAGCATTACAGGACAGCCAGATTTCTC 1042
Query 1049 CTCAAGGCGATCAAGGAAGCTCTCAGGAAGCAGAGCGTGGGAAAGAGCCAACGAGACCGA 1108
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1043 CTCGAGGCGATCAAGGAAGCTCTCAGGAAGCAGAGCGTGGGAAAGAGCCAACGAGACTGG 1102
Query 1109 TCAAGGAGGAGAATGTGGATATGATGTTATACTAATGACCGAAATCCCTTACTCGGTTAC 1168
||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1103 TCAAGAAGGAGAATATGGATATGATGTTATACTAATGACCGAAATCCCTTACTCTATTAC 1162
Query 1169 TTCTCTGAAAAAACTATATTCTCTCATAAAGAAGTGCCTGAGACCGCCATATGGTGTAAT 1228
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1163 TTCTCTGAAGAAACTATATTCTCTCATAAAGAAGTGCCTGAGACCGCCATACGGTGTAAT 1222
Query 1229 GTATTTGGCGGCGAAGAAGCAGTACGTAGGATTCAACAGTGGAGCAAAACATTTGAGGAA 1288
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1223 GTATTTGGCGGCGAAGAAGCAATACGTAGGATTCAACAGTGGAGCGAAACATTTGAGGAA 1282
Query 1289 CTTGGTGGATGAAGAAACTATCTTAGGAGCTCATTTGGTTAAGGAGACTACAGACAGAGA 1348
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1283 CTTGGTGGATGAAGAAACTATCTTAGGAGCTCATTTGGTGAAGGAAACTACAGACAGAGA 1342
Query 1349 TATTTGGAAGTTCTTCCTCAAGTAGCTGTGTAGAAGAAAGAACTCAATTCATAACCAAAT 1408
||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||
Sbjct 1343 TATTTGGAAGTTCTTCCTCAAGTAGGTGTGTAGAAGAA-GAACTCA-TTCATAACCAAAT 1400
Query 1409 ATATTCTGCAGCCAACAACAACAGAAGTTGAAAAAAGATGTCAAATACAAAACTCTTTCT 1468
| |||||||||||||||||| | | | | |||||||||||||||||||||||| ||| |
Sbjct 1401 ACATTCTGCAGCCAACAACAT-A-A-GCTAAAAAAAGATGTCAAATACAAAACTTTTT-T 1456
Query 1469 CCTTAAATGTAGTATAGTAGTAATGCAATGATGAAATTGAAGTT 1512
| ||| |||||||| | | |||||||||||||||||||||||
Sbjct 1457 GCGTAA-TGTAGTAT--T-GCAATGCAATGATGAAATTGAAGTT 1496
Score = 580 bits (314), Expect = 1e-164
Identities = 441/496 (89%), Gaps = 34/496 (7%)
Strand=Plus/Plus
Query 1 TTGCTctttcctttttagaatttttctttctttttaaaaaaaaaaaTTATTTTCTTATAT 60
||||||||||||||||||||||||||||||||||| ||||| | |||||| |||
Sbjct 26 TTGCTCTTTCCTTTTTAGAATTTTTCTTTCTTTTT------AAAAA-CA-TTTCTTTTAT 77
Query 61 TTCTTC-TACTTT-AAACGTGTGAGAGATCGCTTTGCTCTGAAATTTCAACCCCTTGTTG 118
|||||| |||||| ||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 78 TTCTTCTTACTTTAAAACGTGTGAGAGATCGCTTTGCTCCGAAATTTCAACCCCTGGTTG 137
Query 119 CTGTATTTGATCCCTAGATTTTCGCCGTGTTTGAGAAGAAGAATCTCATCTTTTTGCCGT 178
|| | |||||||||||||||||||||||| || | ||||||||||||| ||||||||||
Sbjct 138 CTTTGTTTGATCCCTAGATTTTCGCCGTG-TT-A-TAGAAGAATCTCAT-TTTTTGCCGT 193
Query 179 CTGAATCG-AATTTCGTGTCGAGAA---CT---CT--TCCGCTTCTCGCTTTCTCTTTTT 229
|||||||| |||||||||||||||| || || ||| ||||||| |||||||||||
Sbjct 194 CTGAATCGAAATTTCGTGTCGAGAACTCCTCCACTCCTCCACTTCTCGTTTTCTCTTTTT 253
Query 230 ATATCT-TTTTGCT-AATT-TTA-GA-TTGGAGCGTTATCGAGAGAGAACTCAGAGCTAA 284
| || | |||| || ||| | | | || ||||||||| ||||||||| |||| |
Sbjct 254 A-ATTTATTTTACTCTATTGTGACCATTTTGAGCGTTAT----TGAGAACTCAAAGCTCA 308
Query 285 AGAATGCGTGCACCATCTTTGCTTGCACAATGCTTGCCGGGTTTGCTACCTCAAGACCGA 344
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 309 AGAATGCGTGCACCATCTTTGCTTGCACAATGCTTGCCGGGTTTGCTGCCTCAAGACCGA 368
Query 345 GGCGGTGTGTCTGCATTATCAGAGAAGGATTTGCAGCTTCCAACACCAGCTGTTGAGATC 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 GGCGGTGTGTCTGCATTATCAGAGAAGGATTTGCAGCTTCCAACACCAGCTGTTGAGATC 428
Query 405 ATACCTTCTAAGACAGCAGCTCATCACAGGTATTCAGGGGAGAATCTAGATGATGCTCGG 464
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 429 ATACCTTCTAAGACAGTAGCTCATCACAGGTATTCAGGGGAGAATCTAGATGC-GCTCGG 487
Query 465 TTTACAAGTTTTCAAG 480
||||||||||||||||
Sbjct 488 TTTACAAGTTTTCAAG 503
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74598009870
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5