BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483441
Length=847
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43340.1 | Symbols: | Protein of unknown function (DUF1685)... 1199 0.0
> AT2G43340.1 | Symbols: | Protein of unknown function (DUF1685)
| chr2:18007697-18008665 FORWARD LENGTH=891
Length=891
Score = 1199 bits (649), Expect = 0.0
Identities = 806/875 (92%), Gaps = 37/875 (4%)
Strand=Plus/Plus
Query 1 TAATTACCACTTTCTTCTCC--ATAC---AAAAACAGAGTACTCACAATGTGCGATTCAG 55
|||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||
Sbjct 26 TAATTACCACTTTCTTCTCCATATACAAAAAAAACAGAGAACTCACAATGTGCGATTCAG 85
Query 56 ATTTTCTCTCTCGTTGCTCTTCCTACGAAGCAGACGTTGATTCCGACAGCGAGATCTCTA 115
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 86 ATTTTCTCTCTCGTTGCTCTTCCTACGAAGCAGACGTTGATTCCGACAGCGAGATCTCGA 145
Query 116 CCTCCAGTTTCAGTTCTTGTTCGTACAGTGAATCTGAGGAAGAAGAGATCGACAATGGTT 175
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 146 CCTCCAGTTTCAGTTCTTGTTCGTACAGTGAATCTGAGGAAGAAGAGATCAACAATGGTT 205
Query 176 TTGGTGTTGTTGAGTCGAAGAAGCAAACGAAGAAACTGGAGAAGAAGAAGAGTAATGTGT 235
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 206 TTGGTGTTGTTCAGTCGAAGAAGCAAACGAAGAAACTGGAGAAGAAGAAGAGTAATGTGT 265
Query 236 TGTTAGAAGGTTATGTAGTTGATTCAGGC-GTGAATGATGATTTGAAGAGAACCAAGAGT 294
||||||||||||| || || ||||||| | ||||||||||||||||||||||||||||||
Sbjct 266 TGTTAGAAGGTTACGTTGTAGATTCAG-CTGTGAATGATGATTTGAAGAGAACCAAGAGT 324
Query 295 TTAACGGACGATGATCTCGAGGAGCTTAAAGGATGTGTAGATCTAGGATTTGG-TTTCAA 353
||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||| ||
Sbjct 325 TTAACGGACGATGATCTCGAGGAGCTTAAGGGATGTGTAGATCTAGGGTTTGGGTTT-AA 383
Query 354 TTACGAGGAGATTCCTGAGCTTTGTAATACTTTGCCAGCTCTTGAGCTTTGTTACTCTAT 413
|||||||||||||||||| |||||||||||||| |||||||||||||| |||||||| ||
Sbjct 384 TTACGAGGAGATTCCTGAACTTTGTAATACTTTACCAGCTCTTGAGCTCTGTTACTCGAT 443
Query 414 GAGTCAGAAGTTTATTGATCATCAAGATCATCATCAttcttcttcttcttcttcCCCGGA 473
||||||||||||||||||||| | ||||||||||| | | | |||||||||| || ||
Sbjct 444 GAGTCAGAAGTTTATTGATCA--A-GATCATCATCAC-CAT-T-CTTCTTCTTCGCCAGA 497
Query 474 GAAGAAATCGTCGGTTCTTGATTCTCCTGTTAGTCCTATTGCTAGCTGGAAGATCTCTAG 533
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 GAAGAAATCATCGGTTCTTGATTCTCCTGTTAGTCCTATTGCTAGCTGGAAGATCTCTAG 557
Query 534 TCCTGGTGATAATCCTGATGAGGTTAAAGCAAGGTTGAAATTTTGGGCACAAGCTGTGGC 593
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 558 TCCTGGTGATAATCCTGATGATGTTAAAGCAAGGTTGAAATTTTGGGCACAAGCTGTGGC 617
Query 594 ATGTACTGTGAGATTATGCACTTGAACAAGAGATTTGGATTTGATCAATCGAAAGTTGAG 653
|||||||||||| ||||| ||||||| | ||||||||||||||||||| | |||| ||||
Sbjct 618 ATGTACTGTGAGGTTATGTACTTGAAGATGAGATTTGGATTTGATCAACCAAAAGCTGAG 677
Query 654 GAACCAATGGAGGA--AC-AAGA--------C-A-A---TTTGCAGGAGTGAAATCTCTT 697
||| |||||||||| | |||| | | | |||||||||||||||||||||
Sbjct 678 GAATCAATGGAGGAGGAAGAAGATGGTGAAACCAGACAATTTGCAGGAGTGAAATCTCTT 737
Query 698 ATGAGACTGACCTGCTTGAAAACACCCATTGTTGTAGAGCTCTTTGCTCACACTGTAT-- 755
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 738 ATGAGACTGACCTGCTTGAAAACAACCATTGTTGTAGAGCTCTTTGCTCACACTGTATGT 797
Query 756 A-AAAA-GATTAATGATC-AACTAAGATTTTGCTAGGACATTGTTGTAATGGATGATTAA 812
| |||| ||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 798 ATAAAAAGATTAATGATCTAAG-AAGATTTTGCTAGGACATTGTTGTAATGGATGATTAA 856
Query 813 TAAGAGGGAAATGAATAAAACTTTGTTCTTTATTG 847
|||||| ||||| ||||||||||||||||||||||
Sbjct 857 TAAGAGAGAAATAAATAAAACTTTGTTCTTTATTG 891
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41292468834
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5