BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483442
Length=887
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43350.1 | Symbols: ATGPX3, GPX3 | glutathione peroxidase 3 ... 1356 0.0
> AT2G43350.1 | Symbols: ATGPX3, GPX3 | glutathione peroxidase
3 | chr2:18008642-18010600 REVERSE LENGTH=905
Length=905
Score = 1356 bits (734), Expect = 0.0
Identities = 848/901 (94%), Gaps = 16/901 (2%)
Strand=Plus/Plus
Query 1 TTCTGAGATCGTCTTGTTCATC-AA-AG-AGAAG----A---t-tttttttttt-tttCC 48
|||||||||||||||||||| | || || ||||| | | |||||||||| |||||
Sbjct 5 TTCTGAGATCGTCTTGTTCACCAAAGAGAAGAAGACTAACTGTGTTTTTTTTTTCTTTCC 64
Query 49 TCGATGCCTAGATCAAGCAGATGGGTCAATCATCCAGCTACCTCTAAGACTAAAAAATTA 108
|||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||
Sbjct 65 TCGATGCCTAGATCAAGCAGATGGGTCAATCAGCGAGCTACCTCTAAGATTAAAAAATTT 124
Query 109 ATTCTCTTCTTGCTTGTAGCCTTCGTCTTCTACCTCTACAGATACCCTTCTTCTCCATCC 168
|| ||||| ||| ||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 125 ATACTCTTTTTGGGTGTAGCCTTTGTCTTCTACCTCTACAGATACCCTTCTTCGCCATCG 184
Query 169 ACAGTGGAACAATCATCCAGTTCCATCTACAACATTTCCGTTAAGGACATTGAAGGGAAA 228
|| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 185 ACGGTGGAACAATCATCCACTTCCATCTACAACATTTCCGTTAAGGATATTGAAGGGAAA 244
Query 229 GATGTAAGTTTGAGCAAGTTCACCGGAAAAGTGCTTCTTATAGTCAATGTAGCCTCTAAG 288
||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 245 GATGTGAGTTTGAGCAAGTTTACCGGGAAAGTGCTTCTTATAGTCAATGTAGCCTCTAAG 304
Query 289 TGTGGTCTAACACATGGAAACTACAAAGAAATGAACATTTTGTATGCCAAGTACAAAACT 348
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 305 TGTGGTCTAACACATGGAAACTACAAAGAAATGAACATTCTGTATGCCAAGTACAAAACT 364
Query 349 CAGGGGTTTGAGATCTTAGCATTTCCTTGCAACCAATTTGGTAGTCAAGAGCCAGGTAGC 408
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 365 CAGGGGTTTGAGATCTTAGCATTTCCTTGCAACCAATTTGGTAGTCAAGAGCCAGGCAGC 424
Query 409 AACAAGGAGATCAAGGAAACCGTTTGCAATATCTTCAAAGCAGAATTCCCAATCTTTGAC 468
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 AACATGGAGATCAAGGAAACCGTTTGCAATATCTTCAAAGCAGAATTCCCAATCTTTGAC 484
Query 469 AAGATTGAAGTAAATGGAAAGAACACTTGTCCCCTTTACAACTTCTTAAAAGAACAAAAA 528
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 485 AAGATTGAAGTAAATGGAAAGAACACTTGTCCCCTTTACAATTTCTTAAAAGAACAAAAA 544
Query 529 GGAGGATTGTTTGGGGATGCTATTAAGTGGAATTTCGCTAAGTTTCTGGTAGACAGACAA 588
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 545 GGAGGATTGTTTGGGGATGCTATTAAGTGGAATTTCGCAAAGTTTCTGGTAGACAGACAA 604
Query 589 GGAAATGTCGTGGACCGATATGCTCCAACTACATCACCTCTTGAAATTGAGAAGGACATC 648
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 605 GGAAATGTCGTTGACCGATATGCTCCAACTACATCACCTCTTGAAATTGAGAAGGATATC 664
Query 649 GTGAAGCTATTGGCATCTGCTTGAACATAAAAGTTAAAGGACAGGAGAGCAAAC-GCATC 707
|| |||||||||||||||||||||||||| | || |||||||||||||||||| |||||
Sbjct 665 GTCAAGCTATTGGCATCTGCTTGAACATATATGTCAAAGGACAGGAGAGCAAAAAGCATC 724
Query 708 GCATCAAACATGTCTGAGACTGAGAATGAAAACCACTTTCTATACTTATTCTTTACATGT 767
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 725 GCATCAAACATGTCTGAGACTGAGAATGAAAACCACTTTCTATACTTATTCTTTACCTTT 784
Query 768 -ATGTTTATCTAAAACCATCCTTGGAAAAGAAGATGCTTGTCTGAATCTGTGAACCTCAT 826
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 785 CATGTTTATCCAAAACCATCCATGGAAAAGAAGATGCTTGTCTGAATCTGTGAACCTCAT 844
Query 827 TTTCTGTAACAAGACCCCCACAAATTGCTTATGAAATATCAATAAAGAACAAAGTTTTAT 886
|||||||||||| ||||| | |||| |||||||||| |||||||||||||||||||||||
Sbjct 845 TTTCTGTAACAAAACCCCAA-AAAT-GCTTATGAAACATCAATAAAGAACAAAGTTTTAT 902
Query 887 T 887
|
Sbjct 903 T 903
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43301834714
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5