BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483444
Length=1060
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43370.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1598 0.0
> AT2G43370.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:18013370-18015454 FORWARD LENGTH=1141
Length=1141
Score = 1598 bits (865), Expect = 0.0
Identities = 998/1062 (94%), Gaps = 9/1062 (1%)
Strand=Plus/Plus
Query 1 TCTTTATTTCCTTAAATAGCCGGAGCCGCCGTGAGAGTGAGA-A--AGGGGTAGAAGAAA 57
|||||||||||||||| |||||||||||||||||||| |||| | |||| ||||||||
Sbjct 3 TCTTTATTTCCTTAAACAGCCGGAGCCGCCGTGAGAGAGAGAGAGTCGGGGGAGAAGAAA 62
Query 58 TGAGCGGCGGAGGAAACAACGTCGTGAACAAAGTGTTCTACGCGACGTCGTATCATCCGA 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 TGAGCGGCGGAGGAAACAACGTCGTGAACAAAGTGTTCTACGCGACGTCGTATCATCCGA 122
Query 118 TTCAAGCCGGAAGTATCGACGGAACTGACGTTGCTCCACATGATAACGGCGTACGTCGAG 177
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 123 TTCAAGCCGGAAGTATCGACGGAACTGATGTTGCTCCACATGATAACGGCGTCCGTCGAG 182
Query 178 CTCTTCTTTGTTATAACGCCGGCTTATATGATCCTTCTGGTGATTCGAAGGCTGTTGGAG 237
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 183 CTCTTCTCTGTTATAACGCTGGCTTATATGATCCTTCTGGTGATTCGAAGGCTGTTGGAG 242
Query 238 ATTCTTACTGTACTCTCTTCGTGGGTCGTCTCTCTCATCATACTACTGAAGATACTA-TT 296
|| ||||||||||||||||||||||||||||||||||||| ||||| || ||||| | ||
Sbjct 243 ATCCTTACTGTACTCTCTTCGTGGGTCGTCTCTCTCATCACACTACGGAGGATAC-ACTT 301
Query 297 CGAGAGGTGATGACTAAGTATGGCAGGATTAAAAACTTGCGCTTGGTTAGACACATTGTG 356
||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 302 CGAGAGGTGATGAGTAAGTATGGCAGGATTAAGAACTTGCGCTTGGTAAGACACATTGTG 361
Query 357 ACGGGAGCTTCACGAGGGTATGCTTTTGTGGAGTATGAGACTGAAAGGGAGATGCTTCGT 416
||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||
Sbjct 362 ACGGGAGCTTCACGAGGATATGGTTTTGTGGAGTATGAGACTGAAAAGGAGATGCTTCGT 421
Query 417 GCTTATGAGGATGCTCATCATTCTTTAATCGATGGTCGGGAGGTTATTGTTGATTACAAT 476
||||||||||||||||||||||| |||| ||||| || ||| ||||||||||||| |||
Sbjct 422 GCTTATGAGGATGCTCATCATTCACTAATAGATGGGCGAGAGATTATTGTTGATTATAAT 481
Query 477 CGACAGCAATTGATGCCTGGATGGATACCAAGAAGACTAGGAGGTGGGCTTGGTGGTAGG 536
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 482 AGACAGCAATTGATGCCTGGATGGATACCAAGAAGACTAGGAGGTGGCCTTGGTGGTAGG 541
Query 537 AAAGAATCTGGACAACTTCGCTTTGGAGGACGAGAAAGACCATTCCGTGCTCCCTTGCGA 596
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 542 AAAGAATCCGGACAACTTCGCTTTGGAGGACGAGATAGACCATTCCGTGCTCCCTTACGA 601
Query 597 CCAATCCCTCATGAAGATTTGAAAAAGCTCGGTATTCAGCTTCCGCCTGAGGGAAGATAT 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 CCAATCCCTCATGAAGATTTGAAAAAGCTCGGTATTCAGCTTCCGCCTGAGGGAAGATAT 661
Query 657 ATGTCGCGCACACAGATCCCATCACCTCCTAGGAGAAAAGGAAATGTGTTGGATAGAGAG 716
||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||
Sbjct 662 ATGTCGCGCACACAGATCCCATCACCTCCAAGGAGAAAAGGAAGTGTGTCGGATAGAGAG 721
Query 717 GAAGGATATTATCGGGAAAAGAGTTCTGTAGAAAGGGATGAAGAGTTTAAAGAGCGAAGC 776
|||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 722 GAAGAATATTATCGGGAAAAGAGTTCTGTAGAACGGGAAGAAGAGTTTAAAGAGCGAAGC 781
Query 777 AGCCTTAGGTCTTATCACAGTCACAGGACGAGCTcacacacacacaGCTCCCATAGAAGA 836
||||||||||| ||||||||||||||| ||||| ||||||||||||| || |||||||||
Sbjct 782 AGCCTTAGGTCATATCACAGTCACAGGTCGAGCGCACACACACACAGTTCTCATAGAAGA 841
Query 837 CGCAGCAAAGACAGAGACGAGCGTTCCAGG-ACAGAGTCTCGTTCTGATAGAAAAGAGAG 895
||||||||||||||||| ||| |||||||| | |||||| ||||||||||||||||||||
Sbjct 842 CGCAGCAAAGACAGAGAGGAGTGTTCCAGGGA-AGAGTCCCGTTCTGATAGAAAAGAGAG 900
Query 896 ATCACGAGGTATGGAAGATCGATATGGTGACAACAAGGGTGAAGTTTCTGGCAGCAAAAG 955
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AGCACGAGGTATGGAAGATCGATATGGTGACAACAAGGGTGAAGTTTCTGGCAGCAAAAG 960
Query 956 ATCAAAACAT-CTTGAAGAAGACCGTTCTCACAAACGTCATAAATACATGCATTCCCATC 1014
|||||||| | || ||||||||||| |||| ||||||||||||| || ||| ||||||||
Sbjct 961 ATCAAAACGTTCT-GAAGAAGACCGATCTCGCAAACGTCATAAACACTTGCCTTCCCATC 1019
Query 1015 ATCATAGGAGATCCTCTAGTCAAGATCAACATTCTTCTGACT 1056
|||||||||| |||| |||||||||||| |||||||| ||||
Sbjct 1020 ATCATAGGAGGTCCTATAGTCAAGATCATCATTCTTCCGACT 1061
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51907363530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5