BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483445
Length=169
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43386.1 | Symbols: | unknown protein; LOCATED IN: endomemb... 285 8e-77
> AT2G43386.1 | Symbols: | unknown protein; LOCATED IN: endomembrane
system; Has 30201 Blast hits to 17322 proteins in 780
species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi
- 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
(source: NCBI BLink). | chr2:18019512-18019682 FORWARD LENGTH=171
Length=171
Score = 285 bits (154), Expect = 8e-77
Identities = 164/169 (97%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 1 ATGACGTTTGGAAAGAAAATTGCGATTGTGTCAATGGCCATATTTTTAATGATAGTAGCA 60
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACGTTTGAAAAGAAAATTGTGATTGTGTCAATGGCCATATTTTTAATGATAGTAGCA 60
Query 61 ACAACCGCTACCGAAGTTGATGGTCAAATTCATGTCCGACGGAGCTTAGCTGATTTTGGT 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 ACAACCGCTACCGAAGTTGATGGTCGAATTCATGTCCGACGGAGCTTAGCTGATTTTGGT 120
Query 121 GGAGGTTGTTGCAACGTGTTCATTCACACTTGTTGTTTTCCTAAACATT 169
||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 121 GGAGGTTGTTGCAACGTTTTTATTCACACTTGTTGTTTTCCTAAACATT 169
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 7343997246
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5