BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483447
Length=2179
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43400.1 | Symbols: ETFQO | electron-transfer flavoprotein:u... 3291 0.0
> AT2G43400.1 | Symbols: ETFQO | electron-transfer flavoprotein:ubiquinone
oxidoreductase | chr2:18021180-18025292 FORWARD
LENGTH=2277
Length=2277
Score = 3291 bits (1782), Expect = 0.0
Identities = 2000/2103 (95%), Gaps = 23/2103 (1%)
Strand=Plus/Plus
Query 52 TCCTTGGATCA---TCCTAATTACTCAGTGATCATGCATAGATTCCTTGTAAAG-----T 103
||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 92 TCCTTGGATCATCCTCCTAATTACTCAGTGATCATGCATAGATTCCTTGTAAAGCTATCT 151
Query 104 T-GTCTTCTT---CATCCTCTAATCCATTGAGAAGCTTGAAGAATCAGCGTCTGATTCTC 159
| ||||||| ||| |||||||| |||||||||||||||||| |||||||||||||||
Sbjct 152 TCTTCTTCTTCACCATTCTCTAATCAATTGAGAAGCTTGAAGAACCAGCGTCTGATTCTC 211
Query 160 CCTCTATCGCCTTCTTCAAAATCTTTTACCTCCTCTTCTGTCTCACCACCTCCAAGGCCA 219
||||||| |||||||||||| ||||||||||||| ||||| |||||||||||||| ||
Sbjct 212 CCTCTATTACCTTCTTCAAAACCTTTTACCTCCTCCTCTGTGTCACCACCTCCAAGTCCC 271
Query 220 TCGAACGCTTCTAATCGATTTGGGTATCCTTATTTCGCCGAGTTGTTTCGAAATTTGTCA 279
| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 272 TTGAACGCTTCTAATCGATTTGGGTATCCTTATTCCGCCGATTTGTTTCGAAATTTGTCA 331
Query 280 CCTTTAAGCTCAAATTCGAGGACTTTAGGAGTGAATGGG---AGTAGTAGTAGATGTATC 336
||||||| | |||||||||||| ||||||||| |||||| | ||||||||||||||||
Sbjct 332 CCTTTAAACCCAAATTCGAGGATTTTAGGAGTCAATGGGATTACTAGTAGTAGATGTATC 391
Query 337 AGCAGTGAATCGGGAAGAGAATCGATTGAGTACGATGTTCTGATTGTCGGAGCTGGACCG 396
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 392 AGCAGTGAAGCGGTCAGAGAATCGATTGAGTACGATGTTCTGATTGTCGGAGCTGGACCG 451
Query 397 GCCGGTTTATCTGCTGCTATACGATTGAAACAACTGTCTCAGGAGAAGAACATTGATCTA 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 452 GCCGGTTTATCTGCTGCTATACGATTGAAACAACTGTCTCAGGAGAAGAACATTGATCTA 511
Query 457 TCTGTTTGTGTCGTTGAGAAAGGAGCAGAAGTTGGAGGACACATTATATCTGGAAATGTT 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 512 TCTGTTTGTGTCGTTGAGAAAGGAGCAGAAGTTGGAGGACACATTATATCTGGAAATGTT 571
Query 517 TTTGAACCTCTGGCACTTGATGAGCTTCTTCCACATTGGAGACAAGAACATGCACCCATT 576
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 TTTGAACCCCTGGCACTTGATGAGCTTCTTCCACATTGGAGACAAGAACATGCACCCATT 631
Query 577 GAGATCCCTGCTTCTTCTGATAAATTCTGGTTTTTGACCAAAGATCGTGCAATTTCACTT 636
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 632 GAGATCCCTGCTTCTTCTGATAAATTCTGGTTTTTGACGAAAGATCGTGCATTTTCACTT 691
Query 637 CCTTCTCCGTTTGATAACAAGGGAAACTACGTTATTAGTTTGAGCCAACTGGTGCGTTGG 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 692 CCTTCTCCGTTTGATAACAAGGGAAACTACGTTATTAGTTTGAGCCAACTGGTGCGTTGG 751
Query 697 CTGGGAGGAAAAGCTGAGGAGCTTGGAACAGAGATTTATCCTGGCTTTTCTGCTAGTGAG 756
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 752 CTAGGAGGAAAAGCTGAGGAGCTTGGAACAGAGATATATCCTGGCTTTTCTGCTAGTGAG 811
Query 757 GTTTTATATGATGCAAGTGATAAAGTTGTTGGGATTGCAACCAAAGATATGGGAATATCC 816
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 GTGTTATTTGATGCAAGTGATAAAGTTGTTGGGATTGCAACCAAAGATATGGGAATATCC 871
Query 817 AAAGATGGTTCCAAGAAGGAGAATTTCCAGCCAGGTGTTGACATAAAAGGGCGAGTTACA 876
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 872 AAAGATGGTTCCAAGAAAGAGAATTTCCAGCCAGGTGTTGACATAAAAGGGCGAGTTACA 931
Query 877 CTGTTTGCAGAGGGATGCAGAGGATCATTGTCGGAGAGAATAATCAAAAAGTATAAATTA 936
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 932 CTGTTTGCAGAGGGATGTAGAGGATCATTGTCAGAGAGAATAATCAAAAAGTATAAATTA 991
Query 937 AGAGAGGAGGTTAATGCACAACATCAGACATATGCTTTGGGAATCAAGGAGGTCTGGGAG 996
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 992 AGAGAAGAGGTTAATGCACAACATCAAACATATGCTTTGGGAATCAAGGAGGTCTGGGAG 1051
Query 997 ATAGATGAAAGCAAGCATAACCCTGGCGAAGTTATTCACACATTGGGTTGGCCCTTGGAT 1056
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1052 ATAGATGAAAGCAAACATAACCCTGGAGAAGTTATTCACACATTGGGTTGGCCCTTGGAT 1111
Query 1057 CCCAAGACATATGGAGGTTCTTTCTTGTACCACATGAATGATAGACAGGTTGCACTTGGC 1116
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1112 CCCAAGACATATGGAGGTTCTTTCTTGTACCACATGAACGATAGACAGGTTGCACTTGGC 1171
Query 1117 TTGGTTGTTGCCTTGAATTACCACAACCCTTTCTTGAATCCGTATGAGGAATTTCAGAAA 1176
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1172 TTGGTTGTTGCCTTGAACTACCACAACCCTTTCTTGAATCCGTATGAGGAATTTCAGAAA 1231
Query 1177 CTCAAACACCATCCTGCCATTAAAGGCATCTTGGAAGGTGGTACTGTGCTTCAGTATGGG 1236
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1232 CTCAAACACCATCCTGCTATTAAAGGCATCTTGGAAGGTGGTACCGTGCTTCAGTATGGA 1291
Query 1237 GCTCGTACTTTAAATGAAGGTGGTTTTCAGTCCATTCCCTATCCAGTTTTTCCTGGAGGA 1296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1292 GCTCGTACTTTAAATGAAGGTGGTTTTCAGTCCATTCCCTATCCAGTTTTTCCTGGAGGA 1351
Query 1297 GCAATAATTGGATGTTCAGCTGGTTTTCTCAATGTACCCAAGATTAAGGGAACACACACT 1356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1352 GCAATAATTGGATGTTCAGCTGGTTTTCTCAATGTACCCAAGATTAAGGGAACACACACT 1411
Query 1357 GCAATGAAATCAGGAATGTTAGCAGCAGAGGCTGCATTTGGTGCACTTCATGAAGGTTTA 1416
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1412 GCAATGAAATCAGGAATGTTAGCAGCAGAGGCTGCATTTGGTGCACTTCATGAAGGCTTA 1471
Query 1417 AACATGAACACGTACTGGGACAACTTGAGGGATTCATGGGTGTGGAAGGAACTCTACGCT 1476
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1472 AACATGAACACGTACTGGGACAACTTGAGGGATTCATGGGTGTGGAAGGAGCTCTACGCA 1531
Query 1477 GCTCGAAACTACCGTCCTGCATTCGAGTATGGGCTACTCCCTGGCTTGGCCGTTAGTGCT 1536
||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1532 GCTCGAAACTATCGTCCTGCATTCGAGTATGGGCTACTTCCTGGCTTGGCCATTAGTGCT 1591
Query 1537 ATGGAACACTATGTACTGAAAGGAAAAGTTCCTTTCACGCTCAAGCATGGGAAAGCAGAC 1596
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1592 ATGGAACACTATGTACTGAAAGGAAAAGTCCCTTTCACGCTCAAGCATGGGAAAGCAGAC 1651
Query 1597 CACGAAGCAACAGATCTTGCTCGGAAATGCACACCGATTGTGTATCCAAAGCCAGATGGT 1656
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1652 CACGAAGCAACAGATCTTGCTCGGAAATGGACACCGATTGTGTATCCAAAGCCGGATGGT 1711
Query 1657 GTTTTATCGTTTGATGTGCCAACTTCTTTATACAGGAGTAATACCAATCATGATCACGAC 1716
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1712 GTTTTGTCGTTTGATGTGCCAACTTCTTTATACAGGAGTAATACCAATCATGATCATGAT 1771
Query 1717 CAACCATCTCATTTGCGCTTGAGGGATCCTAAGATTCCAGAAAAGGTAAACTTCCCAGAG 1776
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1772 CAACCATCTCATTTGCGCTTGAGGGATCCTAAGATTCCAGAAAAGGTAAACTTTCCAGAG 1831
Query 1777 TATGCTGCACCAGAGTCACATTACTGCCCGGCCCGTGTTTATGAATATATCGAAGACGAA 1836
|||||||| |||||||||| ||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1832 TATGCTGCGCCAGAGTCACGTTACTGCCCAGCCCGTGTTTACGAATATATCGAAGACGAA 1891
Query 1837 GAGGGTAAACCGAAACTGCAGATCAACGCTCAAAACTGTTTGCACTGCAAGGCATGTGAC 1896
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1892 GAGGGTAAGCCAAAACTGCAGATCAACGCTCAAAACTGTTTGCACTGCAAGGCATGTGAC 1951
Query 1897 ATCAAAGATCCGAAGCAGAACATAGAGTGGACAGTGCCTGAAGGTGGTGGTGGCCCTGCT 1956
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1952 ATCAAAGATCCAAAGCAGAACATAGAGTGGACAGTGCCTGAAGGTGGTGGAGGCCCTGCC 2011
Query 1957 TATTCCCTCATGTAGTCCTCAACTTTCAACAAACCTCAC--ACTTACCATCCATATCTGA 2014
||||||||||||||||||| || ||||||| ||||| | |||| | ||||||||||
Sbjct 2012 TATTCCCTCATGTAGTCCTTAAGATTCAACATACCTCTCTCACTTT--A-CCATATCTGA 2068
Query 2015 TAAATAAATGAGACTCAACAAAATCCTAATCGTCTTGAtttttttttttACTAAATGTTT 2074
|||||||||||||||||||||||||||||| |||| | |||| ||||| |||||||||||
Sbjct 2069 TAAATAAATGAGACTCAACAAAATCCTAATTGTCTGGGTTTTCTTTTT-ACTAAATGTTT 2127
Query 2075 GTAAGCGTTAGTGTTTCGTTTGTTTGTAAACTTTCACTTGACTTCTATT--aaaaaaaaa 2132
|||| | |||||||| | | |||||||| ||||||||||||| |||||| |||||||||
Sbjct 2128 GTAATCATTAGTGTTACCTGTGTTTGTACACTTTCACTTGACGTCTATTCCAAAAAAAAA 2187
Query 2133 aaa 2135
|||
Sbjct 2188 AAA 2190
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108081773385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5