BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483452
Length=1881
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43420.1 | Symbols: | 3-beta hydroxysteroid dehydrogenase/i... 2935 0.0
> AT2G43420.1 | Symbols: | 3-beta hydroxysteroid dehydrogenase/isomerase
family protein | chr2:18031268-18035098 REVERSE LENGTH=2073
Length=2073
Score = 2935 bits (1589), Expect = 0.0
Identities = 1789/1883 (95%), Gaps = 24/1883 (1%)
Strand=Plus/Plus
Query 1 TAAATGAAAACGCTAAAAGGTTTCGCGAGTGGAGAGCATATAATCTGCCCGCCAAGCAAC 60
|||| ||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1 TAAAGGAAAACGCTAAAAGGTTGCGCGAGTGGAGAG-------TCTGCCCGCCAAGCAAC 53
Query 61 CCCTAGTATTCAGCTTTTTGTGCACTGATCCAACTCGACTCGGCCTTTTTCTCTGAGTTG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 54 CCCTAGTATTCAGCTTTTTGTGCACTGATCCAACTCGACTCGGCCTTTTTCTCTGAGTTG 113
Query 121 ACTCGGCCGAGTTTTATAGCGAGAAGGCGATATAGCTGGGGTTTGATTTGGCGATAACAA 180
||||| ||||| | | ||||||||| ||||||||||| ||| |||||||||||
Sbjct 114 ACTCGACCGAG------A---A-AAGGCGATAGAGCTGGGGTTTAATTCGGCGATAACAA 163
Query 181 TGGACGAAGATTCCGTCCGTGGTGGAGATTCTCACCTCAAGACATGTGTCGTCCTTGGCG 240
|||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||
Sbjct 164 TGGACGAAGATTCCGTCC---ATGGCGATTCTCACCTCAAGACATGTGTCGTCCTCGGCG 220
Query 241 GCCGAGGGTTCATTGGTCGATCGCTCGTCTCTAGATTGCTTCGTCTCGGAAACTGGACAG 300
| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 221 GACGAGGGTTCATTGGTCGATCGCTTGTCTCCAGATTGCTTCGTCTCGGAAACTGGACAG 280
Query 301 TCCGTGTCGCTGATTCCGGTCACACTCTCCATCTTGACGAATCCGATTCGGTCCTCGACG 360
|||| ||||| |||||||||||||||||||||||||| |||||||||||| ||||||| |
Sbjct 281 TCCGAGTCGCAGATTCCGGTCACACTCTCCATCTTGATGAATCCGATTCGCTCCTCGAGG 340
Query 361 ATGCTCTCTCCTCCGGCCGTGCTTCTTATCACTGCGTTGATGTTCGTGATAAACCTCAGA 420
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 341 ATGCTCTCTCCTCCGGCCGCGCTTCTTATCACTGCGTCGATGTTCGTGATAAACCTCAGA 400
Query 421 TCGTTAAAGTTACGGAGGGTTCCTATGTTGTGTTTTACATGGGAGCTACTGATTTACATT 480
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 401 TCGTTAAAGTTACCGAGGGTTCCTATGTTGTATTTTACATGGGAGCTACTGATTTACGTT 460
Query 481 CCCATGATTACTTTGACTGCTACAAGGTTATAGTTCAAGGTACAAGAAATGTGATTTCTG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 CCCATGATTACTTTGACTGCTACAAGGTTATAGTTCAAGGTACAAGAAATGTGATTTCTG 520
Query 541 CTTGTCGTGAGTCTGGAGTCAGAAAACTTATCTACAACAGTACAGCTGATGTTGTTTTTG 600
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 CCTGTCGTGAATCTGGAGTCAGAAAACTTATCTACAACAGTACAGCTGATGTTGTTTTTG 580
Query 601 ATGGTTCCCAACCTATACGTGATGGTGATGAATCCTTGAGACGCCCTTTGAAGTTCCAAT 660
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 581 ATGGTTCCCAACCTATACGTGATGGTGATGAATCCTTGAGACGTCCTTTGAAGTTCCAAT 640
Query 661 CCATGCTGACAGACTTCAAAGCTCAAGCGGAATCTTTGATCAAATTTGCAAACAACCGTG 720
| ||| |||||||||||||||||||||| ||| | ||||||||||| || |||||||| |
Sbjct 641 CTATGTTGACAGACTTCAAAGCTCAAGCAGAAGCGTTGATCAAATTGGCTAACAACCGAG 700
Query 721 ATGGTCTCTTAACTTGTGCACTTCGCTCTAGCATTGTATTTGGACCTGGTGACACAGAGT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 701 ATGGTCTCTTAACTTGTGCACTTCGCTCTAGCATTGTATTTGGACCTGGTGACACAGAGT 760
Query 781 TTGTACCTTTCCTGGTGAATCTAGCCAAGTCCGGATATGCAAAGTTTATAATCGGGAGTG 840
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 761 TTGTACCTTTTTTGGTGAATCTAGCCAAGTCCGGATATGCAAAGTTTATACTCGGGAGTG 820
Query 841 GTGAAAATATGTCTGATTTCACTTACTCAGAGAACGTTTCTCATGCACATATTTGCGCCG 900
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 821 GTGAAAATATCTCTGATTTCACTTACTCGGAGAACGTTTCTCATGCACATATTTGCGCCG 880
Query 901 CTGAAGCATTAGATTCACAGATGGAGTTTGTGGCTGGAAAGGAATTTTTTATTACAAATC 960
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 881 TTAAAGCATTAGATTCACAGATGGAGTTTGTGGCTGGAAAGGAATTTTTTATCACAAACC 940
Query 961 TCAAGCCGGTCAGATTTTGGGACTTTGTAAGCCACATAGTTGAAGGTCTGGGATATCCAA 1020
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 941 TCAAGCCGGTCAGATTTTGGGACTTTGTAAGCCATATAGTTGAAGGTCTGGGATACCCAA 1000
Query 1021 GACCATCCATTAAGCTTCCTGTTCGGCTGGTTTTGTTTGTTTTCTCACTTCTTAAATGGA 1080
||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1001 GACCATCCATTAAACTTCCTGTTCGGCTGGTTTTGTATGTTTTCTCACTTCTTAAGTGGA 1060
Query 1081 CACATGAAAAGGAGGGCCTTGGGAGTAATTATGACACAGCTCATCAGTATGCTCTGTTAG 1140
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1061 CACATGAAAAGGAGGGCCTTGGGAGTAATTATGACACAGCACATCAGTATGCTCTGTTAG 1120
Query 1141 CTTCATCGACGAGAACTTTTAACTGCAATGCAGCTAAGAAGCATCTTGGTTACACACCTG 1200
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 CTTCATCAACGAGAACTTTTAACTGCAATGCAGCTAAGAAGCATCTTGGTTACACACCTG 1180
Query 1201 TTGTGACACTTGAAGATGGTATTGCATCAACGCTTCAATGGTTCTCTCGGGATCTTGAGA 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1181 TTGTGACACTTGAAGATGGTATTGCATCAACGCTTCAATGGTTCTCTCGGGATCTTGAGA 1240
Query 1261 AGTCCGATTACACAATCACTCCATCTACTGCAGATCAGCTTCTTGGTTGTGGGAAAGTTG 1320
|||| ||| ||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1241 AGTCTGATGACACAATCATTCAATCTACTGCAGATCAGCTTCTTGGTTGTGGGAAAGTTG 1300
Query 1321 CAGACATCTTGCTGTGGAGAAATGAGAAGAAAACCTTCGTTTCTTTCCTTTTCCTCAACT 1380
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||
Sbjct 1301 CAGACATCTTGCTGTGGAGAAATGAGAAGAAAACCTTCGTTTCTTTTCTTGTCCTAAACT 1360
Query 1381 TGTTTTATTACTGGTTCTTCTTTTCTGGAAACACATTTACTTCATCTGCAGCCCAACTTC 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1361 TGTTTTATTACTGGTTCTTCTTTTCTGGAAACACATTTACTTCATCTGCAGCCCAACTTC 1420
Query 1441 TGTTTATATTTGCTGTTGCTCTCTATGGAGT-TGCTTTTGTGCCGTCAAAGATTTTCGGG 1499
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1421 TGTTTATATTTGCTGTTGCTCTCTATGGAGTCT-CTTTTGTGCCGTCAAAGATTTTCGGG 1479
Query 1500 TTTCAAGTCAAGAAAATACCCCCATGGAGATTTGAGATCTCGGAATCCGCTGTGAGAGAT 1559
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1480 TTTCAAGTCAACAAAATACCCCCATGGAGATTTGAGATCTCCGAATCCGCTGTGAGAGAT 1539
Query 1560 CTTAGTAGAGATATCGTAGTTGTCTGGAATCAGGGAGTTCG-AGGTTTTAAATCCTTAAG 1618
|||||||| ||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 1540 CTTAGTAGTGATATCGTAGTTGTCTGGAATCAAGGAGTTCGCAG-TTTTAAATCCTTAAG 1598
Query 1619 CAGAGGAGGAGACTGGATCAAGTTCTTCAAGATTGCAGGATCACTATATCTCCTCAAACT 1678
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1599 CAGTGGAGGAGACTGGATCAAGTTCTTCAAGATTGCAGGATCACTGTATCTCCTCAAACT 1658
Query 1679 GATCGTATCCCGTTCATTGGCTGCATTTCTTTTCACAGTGGTGTCGTTCTCATTCACCGC 1738
||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1659 GATTGTATCCCGTTCATTGGCAGCATTTCTTTTCACAGTTATGTCGTTCTCATTCACCGG 1718
Query 1739 TTTCTTCATCTACGAGCAATACGAGCTTGAGCTCTACCACCTAGCCCGGATCTTCGTCGA 1798
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1719 TTTCTTCATCTACGAGCAATACGAGCTTGAGCTCTACCACCTAGCCCGGATATTCGTCGA 1778
Query 1799 ATGCTTAACAGTTCTTAAAAGGATGGTGATACCTGTTTCTGATGCTTCATCTAAACCAAT 1858
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1779 ATGCTTAACATTTATTAAAAGGATGGTGATACCTGTTTCTGATGCTTCATCTAAACCAAT 1838
Query 1859 GTTCATGTGAAGCTTCCAAAGTC 1881
|||||||||||||||||||||||
Sbjct 1839 GTTCATGTGAAGCTTCCAAAGTC 1861
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93122010975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5