BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483455
Length=1067
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43445.1 | Symbols: | F-box and associated interaction doma... 1378 0.0
AT2G43440.1 | Symbols: | F-box and associated interaction doma... 1286 0.0
AT2G43260.1 | Symbols: | F-box and associated interaction doma... 351 6e-96
AT2G43270.1 | Symbols: | F-box and associated interaction doma... 180 3e-44
AT4G17780.1 | Symbols: | F-box and associated interaction doma... 178 1e-43
> AT2G43445.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:18041485-18043086 FORWARD LENGTH=1335
Length=1335
Score = 1378 bits (746), Expect = 0.0
Identities = 984/1095 (90%), Gaps = 32/1095 (3%)
Strand=Plus/Plus
Query 1 CCACGACGACAGACAAAACATAAAAGATGGAGGAAGAAAGAAAAAACACTAACTCGATCT 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 1 CCACGACGACAGACAAAACATAAAAGATGGAGGAAGAAAGAGAAAACACTAACTCTATCT 60
Query 61 ACATAGTTCCCGAGCTACTGGAAGAAATTTTCCTTGGATTGCCGTTGAAATCAATCCTCA 120
|||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 61 ACATAGTTTCCGAGCTACTTGAAGAAATTTTCCTTGGATTGCCTTTGAAATCAATCCTCA 120
Query 121 GATTCAAAACCGTCTCAAAACAATGGAGATCAATCCTGGAATCGAAGTTGTTCGTGGAAA 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 121 AATTCAAAACCGTCTCAAAACAATGGAGATCAATCCTGGAATCGAACTTGTTCGTGGAGA 180
Query 181 GGCGTAGGACTCTTCAAAAGAACCGCCGGAAAATCCTGGCTGCGTACAACTGCAACTACT 240
||||||| |||||||||||||||| || ||||||||||||||| || |||||| ||||||
Sbjct 181 GGCGTAGAACTCTTCAAAAGAACCACCCGAAAATCCTGGCTGCTTATAACTGCGACTACT 240
Query 241 GCAGGCGGCCGAGTATCCACCCTGAGTCTCGGTTCGAAGGGGATGAAGAGATCGTTTATC 300
||| ||||||| |||||| |||| |||||| |||||||||||| ||||||||||||||||
Sbjct 241 GCACGCGGCCGGGTATCCTCCCTAAGTCTCAGTTCGAAGGGGACGAAGAGATCGTTTATC 300
Query 301 TGCACT-GCGAGGCCGCGCAACCCTCGATGACTTGCGACGGTTTAGTATGCATCACCGAA 359
| || | ||| ||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 TTCA-TACCGACGCCACGCAACCCTCGATGACTTGCGACGGTTTAGTCTGCATCACCGAA 359
Query 360 CCTAGTTGGTTCAACGTTTTGAACCCCTCCACCGGACAACTCCGGCGATTCCCACTAAAT 419
||| |||||||||||||||||||| |||||||||||||||||| |||| | || |
Sbjct 360 CCTGGTTGGTTCAACGTTTTGAACGTCTCCACCGGACAACTCCGAAGATTTCTACCCGGT 419
Query 420 --AGATTTTCAGGAACGCAAGGAAATTGGCTTTTGGGATTCGGTAGAGACAAAGTTACGG 477
||| | ||||| |||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 420 CCAGA--TCCAGGACCGCAAGCAAATTGGCTCTTGGGATTCGGTAGAGACAAAGTTACGG 477
Query 478 GCAAGTATAAAATAGTGAGGTTGTGTTTTCGTGATTTTTATGAATTTGGTATTCTTGATA 537
|||||||||||||||||||| ||||||||| ||||| |||||||||||| ||||||||||
Sbjct 478 GCAAGTATAAAATAGTGAGGATGTGTTTTCATGATTGTTATGAATTTGGGATTCTTGATA 537
Query 538 TTGAAACTGGTGAATGGAGCAAACTGAGGACACCT-C-C---T--T-C-AGT-----GT- 582
||||| |||| |||||||||||||||| | ||||| | | | | | ||| ||
Sbjct 538 TTGAATCTGGCGAATGGAGCAAACTGATGTCACCTCCTCATATAATGCGAGTGGGAAGTA 597
Query 583 -A--------TGTGAATGGATCAATCTACTGGTTACAAATTAGTGCGAGTTACATAATAC 633
| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 598 AATCGGTGTGTGTGAATGGATCAATCTACTGGTTACAAATTAGTGTGAGTTACATAATAC 657
Query 634 TAGCCTTGGATCTTCACAAAGAAAGC-TACTATGGTATCCACCACCTTCCGGCTACGTGG 692
| ||||||||||||||| |||||| | | | ||||| || ||||||| ||||||||||||
Sbjct 658 TGGCCTTGGATCTTCACCAAGAAA-CGTTCAATGGTGTCTACCACCTCCCGGCTACGTGG 716
Query 693 GTCACGCAGGAAACCCAGTTAGTGAACCTTGAGGACCGTCTAGCCATTGCCATGACGACC 752
|||||||| || ||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 717 GTCACGCAAGATACCCAATTAGTGAACCTTGAGGACCGTCTAGCCATGGCCATGACGACC 776
Query 753 AAAGTTGGGCCTGAGTGGATACTAGAGATCTGGAGCATGGATATAGAAGGAAAAGGATGG 812
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 777 AAAGTTGGGCCTGAATGGATACTAGAGATCTGGAGCATGGATATAGAAGAAAAAGGATGG 836
Query 813 AGCAAGCGTTACTCATGGAGCAAGACTTACTCCATAAGTTTAGCCCATAGAGTTGTTGTA 872
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 837 AGCAAGCGTTACACATGGAGCAAGGCTTACTCCATAAGTTTAGCCCATAGAGTTGTTGTA 896
Query 873 TCCTGGCTATGGCAGAGAAGGTGGTTCACGCCCGTGTCGGTTTCTAAGCAAGGGAATCTT 932
||||||| |||||| | ||||||||||||||| || ||||||||||||||||||||||||
Sbjct 897 TCCTGGCCATGGCAAAAAAGGTGGTTCACGCCGGTATCGGTTTCTAAGCAAGGGAATCTT 956
Query 933 GTCTTCTATGACAATAAGAAGAGGCTGTTCAAATATTATTCAGGTAGAGATGAGATTCGT 992
||||||||||| ||| | |||||||||||||||||||||||||||| |||||||||||||
Sbjct 957 GTCTTCTATGATAATCACAAGAGGCTGTTCAAATATTATTCAGGTACAGATGAGATTCGT 1016
Query 993 TGTCTCTCCTCTAACATTTGTGTTATATCTTCTTACCTTGAAAACTTGGTCCCTCTTCCG 1052
|||||||||||||||||| |||||||||||||||| ||||||| |||| ||| ||||||
Sbjct 1017 TGTCTCTCCTCTAACATTAATGTTATATCTTCTTACGTTGAAAATTTGGCCCCACTTCCG 1076
Query 1053 TTAAAACCAAGCCAT 1067
|||||||||||||||
Sbjct 1077 TTAAAACCAAGCCAT 1091
> AT2G43440.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:18039311-18040722 FORWARD LENGTH=1344
Length=1344
Score = 1286 bits (696), Expect = 0.0
Identities = 965/1090 (89%), Gaps = 38/1090 (3%)
Strand=Plus/Plus
Query 12 GACAAAACATAAAAGATGGAGGAAGAAAGAAAAAACACTAACTCGATCTACATAGTTCCC 71
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1 GACAAAACATAAAAGATGGAGGAAAAAAGAGAAAACACTAACTCGATCTACATAGTTCCC 60
Query 72 GAGCTACTGGAAGAAATTTTCCTTGGATTGCCGTTGAAATCAATCCTCAGATTCAAAACC 131
|||||| ||||||| ||||||||| ||||||| |||||||||||||| | ||||||||||
Sbjct 61 GAGCTATTGGAAGATATTTTCCTTCGATTGCCTTTGAAATCAATCCTGAAATTCAAAACC 120
Query 132 GTCTCAAAACAATGGAGATCAATCCTGGAATCGAAGTTGTTCGTGGAAAGGCGTAGGACT 191
|| |||| |||||||||||||||||||||||| |||||||||||||| ||||| ||| |
Sbjct 121 GTATCAAGACAATGGAGATCAATCCTGGAATCCAAGTTGTTCGTGGAGAGGCGCGGGAAT 180
Query 192 CTTCAAAAGAACCGCCGGAAAATCCTGGCTGCGTACAACTGCAACTACTGCAGGCGGCCG 251
||||||||| ||| |||||||||||| ||||| |||||||||||||||| | |||||||
Sbjct 181 CTTCAAAAGCACCACCGGAAAATCCTAGCTGCTTACAACTGCAACTACTTTATGCGGCCG 240
Query 252 AGTATCCACCCTGAGTCTCGGTTCGAAGGGGATGAAGAGATCGTTTATCTGCACTGCGAG 311
|||||| |||||||||||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct 241 AGTATCTTCCCTGAGTCTCGTTTCGAAGGGGACGAAGAGATCGTTTATCTACACTGCGAC 300
Query 312 GCCGCGCAACCCTCGATGACTTGCGACGGTTTAGTATGCATCACCGAACCTAGTTGGTTC 371
||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||
Sbjct 301 GCCGCGCAACCCTCGATGACTTGCGACGGTTTACTCTGCATCACCGAACCTGGTTGGTTT 360
Query 372 AACGTTTTGAACCCCTCCACCGGACAACTCCGGCGA-T---TCCC--ACTAAATAGATTT 425
|||||||||||||| ||| | ||||||||||||||| | |||| | | | | |
Sbjct 361 AACGTTTTGAACCCATCCGCTGGACAACTCCGGCGATTCCCTCCCGGCCCAGGTCCAGTA 420
Query 426 TCAGGAACGCAAGG-AAATTGGCTTTTGGGATTCGGTAGAGACAAAGTTACGGGCAAGTA 484
|||| ||| ||| ||||||||| |||||||||||||||||||| |||||||||| |||
Sbjct 421 AAAGGACCGC-AGGAAAATTGGCTATTGGGATTCGGTAGAGACAACGTTACGGGCAGGTA 479
Query 485 TAAAATAGTGAGGTTGTGTTTTCGTGATTTTTATGAATTTGGTATTCTTGATATTGAAAC 544
||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 480 TAAAATAGTGAGGATGTGTTTTCATGATTGTTATGAATTTGGTATTCTTGATATTGAAAC 539
Query 545 TGGTGAATGGAGCAAACTGAGG--A-CACCTC--------CTT-C---------A---GT 580
||||| |||||||||||||||| | | |||| ||| | | ||
Sbjct 540 TGGTGTATGGAGCAAACTGAGGTCACCTCCTCATAATATGCTTCCGGGAAGTAAATCGGT 599
Query 581 GTATGTGAATGGATCAATCTACTGGTTACAAATTAGTGCGAGTTACATAATACTAGCCT- 639
|| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||
Sbjct 600 GTGTGTGAATGGATCAATCTACTGGTTACAAATTAGTGCGGGTTACATAATATTAG-CTA 658
Query 640 TGGATCTTCACAAAGAAAGCTACT-ATGGTATCCACCACCTTCCGGCTACGTGGGTCACG 698
||||||||||| |||||||||| | ||||| |||||||||||||||||||||||||||||
Sbjct 659 TGGATCTTCACGAAGAAAGCTA-TCATGGTGTCCACCACCTTCCGGCTACGTGGGTCACG 717
Query 699 CAGGAAACCCAGTTAGTGAACCTTGAGGACCGTCTAGCCATTGCCATGACGACCAAAGTT 758
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 718 CAGGAAACCCAGTTAGTGAACCTTGAGGACCGTCTAGCCATGGCCATGACCACCAACGTT 777
Query 759 GGGCCTGAGTGGATACTAGAGATCTGGAGCATGGATATAGAAGGAAAAGGATGGAGCAAG 818
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GGGCCTGAATGGATACTAGAGATCTGGAGCATGGATATAGAAGGAAAAGGATGGAGCAAG 837
Query 819 CGTTACTCATGGAGCAAGACTTACTCCATAAGTTTAGCCCATAGAGTTG-TTGTATCCTG 877
||||||| |||||||||| |||||||||||||||||||||| |||||| || | |||||
Sbjct 838 GGTTACTCGTGGAGCAAGAGTTACTCCATAAGTTTAGCCCATGGAGTTGGTTTT-TCCTG 896
Query 878 GCTATGGCAGAGAAGGTGGTTCACGCCCGTGTCGGTTTCTAAGCAAGGGAATCTTGTCTT 937
|| |||||||| |||||||||||| || |||| |||||||||||||||||||||| ||||
Sbjct 897 GCCATGGCAGAAAAGGTGGTTCACTCCTGTGTGGGTTTCTAAGCAAGGGAATCTTCTCTT 956
Query 938 CTATGACAATAAGAAGAGGCTGTTCAAATATTATTCAGGTAGAGATGAGATTCGTTGTCT 997
||| || ||| | |||||||| ||||||||||||||||| | ||||||||||||||||||
Sbjct 957 CTACGATAATCACAAGAGGCTATTCAAATATTATTCAGGAACAGATGAGATTCGTTGTCT 1016
Query 998 CTCCTCTAACATTTGTGTTATATCTTCTTACCTTGAAAACTTGGTCCCTCTTCCGTTAAA 1057
|||||||||||| ||||||||||||||||| ||||||| |||| ||| |||||||||||
Sbjct 1017 CTCCTCTAACATCTGTGTTATATCTTCTTATGTTGAAAATTTGGCCCCACTTCCGTTAAA 1076
Query 1058 ACCAAGCCAT 1067
||||||||||
Sbjct 1077 ACCAAGCCAT 1086
> AT2G43260.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:17983691-17985104 REVERSE LENGTH=1331
Length=1331
Score = 351 bits (190), Expect = 6e-96
Identities = 398/491 (81%), Gaps = 43/491 (9%)
Strand=Plus/Plus
Query 585 GTGAATGGATCAATCTACTGGTTACAAATT-AGTGCGAG-TTACATAATACTAGCCTTGG 642
||||||||||| |||||||||||||| ||| || || | ||||| ||||||||||||||
Sbjct 655 GTGAATGGATCTATCTACTGGTTACACATTCAG-ACG-GTTTACAGAATACTAGCCTTGG 712
Query 643 ATCTTCACAAAGAA-AGCTACTATGGTA-TCCACCACCTTCCGGCTACGTGGGTCAC-GC 699
|||||||||||||| || | | || | | | ||| | ||| ||||| | |||| |
Sbjct 713 ATCTTCACAAAGAAGAGTTTC-AT-AAAGT-C-CCA-GTGCCGCCTACGCAGATCACTG- 766
Query 700 AGGAAACCCAGTTAGTGAACCTTGAGGACCGTCTAGCCA-TTGCCATGACGACCAAAGTT 758
||| || ||| | |||||||||||||||||||| | | |||| || | |||| ||||
Sbjct 767 TGGACACTCAGATGGTGAACCTTGAGGACCGTCTCG-TACTTGCTAT-A--ACCAGAGTT 822
Query 759 GGGCCTGAGTGGATACTAGAGATCTGGAGCATGGATATAGAAGGAAAAGGATGGAGCAAG 818
| ||||| |||||||||||| | ||| |||||| ||| | | || | || ||
Sbjct 823 AGCCCTGAATGGATACTAGAGGTATGGGGCATGG--ATA-CA-TACAA--A--GA--AA- 871
Query 819 CGTTACTCATGGAGCAAGACTTACTCCATAAGTTTAGCCCATAGAGTTGTTGTATCCTGG 878
| ||||||||||||||||||||||||||| | |||||||||| | | ||||||
Sbjct 872 ----A---ATGGAGCAAGACTTACTCCATAAGTTTGGATCATAGAGTTG-T-T-TCCTGG 921
Query 879 CTATGGCAGAGAAGGTGGTTCACGCCCGTGTCGGTTTCTAAGCAAGGGAATCTTGTCTTC 938
| | |||||| ||||||||||||||||||| | ||||||||||||| |||||||||||||
Sbjct 922 CGAAGGCAGAAAAGGTGGTTCACGCCCGTGGCAGTTTCTAAGCAAGCGAATCTTGTCTTC 981
Query 939 TATGACAATAAGAAGAGGCTGTTCAAATATTATTCAG-GTAGAGATGAGATTCGTTGTCT 997
|||||||||||||||||||| |||||||||||| ||| | | ||||||||||||||||||
Sbjct 982 TATGACAATAAGAAGAGGCTATTCAAATATTATCCAGTGAA-AGATGAGATTCGTTGTCT 1040
Query 998 CTCCTCTA-ACATTTGTGTTATATCTTCTTACCTTGAAAACTTGGTCCCTCTTCCGTTAA 1056
||||| || ||||||||||| | ||| ||||| | |||||||||||||||||||||||||
Sbjct 1041 CTCCT-TAGACATTTGTGTTCTGTCTCCTTACGTGGAAAACTTGGTCCCTCTTCCGTTAA 1099
Query 1057 AACCAAGCCAT 1067
| |||||||||
Sbjct 1100 AGCCAAGCCAT 1110
> AT2G43270.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:17988207-17989491 REVERSE LENGTH=1164
Length=1164
Score = 180 bits (97), Expect = 3e-44
Identities = 120/131 (92%), Gaps = 2/131 (2%)
Strand=Plus/Plus
Query 56 GATCTACATAGTTCCCGAGCTACTGGAAGAAATTTTCCTTGGATTGCCGTTGAAATCAAT 115
||| ||| |||||||||| ||||| ||||||||||||||||||||||| || ||||||||
Sbjct 3 GATTTACGTAGTTCCCGATCTACTTGAAGAAATTTTCCTTGGATTGCCTTTAAAATCAAT 62
Query 116 CCTCAGATTCAAAACCGTCTCAAAACAATGGAGATCAATCCTGGAATCGAAGTTGTT-CG 174
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 63 CCTCAGATTCAAAACCGTCTCAAAACAATGGAGATCAATCCTGGAATCGAAGA-GTTTCG 121
Query 175 TGGAAAGGCGT 185
||| ||||||
Sbjct 122 CGGAGAGGCGT 132
> AT4G17780.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr4:9880259-9881455 REVERSE LENGTH=1197
Length=1197
Score = 178 bits (96), Expect = 1e-43
Identities = 351/466 (75%), Gaps = 50/466 (11%)
Strand=Plus/Plus
Query 587 GAATGGATCAATCTACTGGTT--ACAAA-TTAGTGCGA--G-TTACATAATACTAGCCTT 640
||||||||| ||||||||||| ||||| || || || | || | ||||||||||||
Sbjct 633 GAATGGATCGATCTACTGGTTACACAAACCTACTGAGAGGGCTTGGACAATACTAGCCTT 692
Query 641 GGATCTTCACAAAGAA-AGCTACTATGGTATCCACCACCTTCCGGCTACGTGGGTCACGC 699
|||||||||||||||| || ||| || || | | |||| | || | | |||||||
Sbjct 693 GGATCTTCACAAAGAAGAGTTAC-ATAACATTT-C-AG-TTCCTGATATGAGTGTCACGC 748
Query 700 AGGAAACC--C-AGTTAGTGAACCTTGAGGACCGTCTAGCCATTGCCATGACGACCAA-A 755
| |||||| | | ||||||||||||||||||| || ||||| |||| | ||| | |
Sbjct 749 AAGAAACCTTCCAAATAGTGAACCTTGAGGACCGCCTGGCCATAGCCA--AT-ACCTATA 805
Query 756 GTTGGGCCTGAGTGGATACTAGAGATCTGGAGCATGGATATAGAAGGAAAAGGATGGAGC 815
| | | ||| |||| ||||||||| ||||||||||||| ||||| | ||
Sbjct 806 CTAAGAC-TGAATGGAAACTAGAGATTTGGAGCATGGATACAGAAG--------T--AG- 853
Query 816 AAGCGTTACTCATGGAGCAAGACTTACTCCATA-AGTTTAGCCCATAGAGTTGTTGTATC 874
|| || ||||| |||||||||||||||| | ||||| ||||||||| | | |
Sbjct 854 AA-----AC--ATGGACCAAGACTTACTCCATAGA-TTTAGAGAATAGAGTTGCT-TC-C 903
Query 875 CTGGCTATGGCAGAGA-AGGTGGTTCACGCCCG-TGTCGGTTTCTAAGCAAGGGAATCTT 932
| || | ||| || | ||||||||||| |||| ||||||||||||||||||| ||| ||
Sbjct 904 CGGGAAA-GGCGGA-ACAGGTGGTTCAC-CCCGGTGTCGGTTTCTAAGCAAGGAAATATT 960
Query 933 GTCTTCTATGACAATAAGAAGAGGCTGTTCAAATATTATTCA-GGTAGAGATGAGATTCG 991
||||||||||| ||| | ||||| || ||||| |||||| || || | | | |||||||
Sbjct 961 GTCTTCTATGATAATCACAAGAGACTTTTCAAGTATTATCCAAGGAAAA-ACGAGATTCT 1019
Query 992 TTGTCTCTCCTCTA-ACATTTGTGTTATATCTTCTTACCTTGAAAA 1036
|| ||||||| | | ||| ||||||||||||| ||| |||||||
Sbjct 1020 TTATCTCTCCGC-AGACACTTGTGTTATATCTCCTTTTTTTGAAAA 1064
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52258767345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5