BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483456
Length=1035
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43480.1 | Symbols: | Peroxidase superfamily protein | chr2... 1657 0.0
> AT2G43480.1 | Symbols: | Peroxidase superfamily protein | chr2:18053002-18054387
FORWARD LENGTH=1052
Length=1052
Score = 1657 bits (897), Expect = 0.0
Identities = 989/1035 (96%), Gaps = 0/1035 (0%)
Strand=Plus/Plus
Query 1 TGAGATGGTTATGATTCATATCTTCCTCACCGCGATGGTGGTTGGAGGCGTTAGTCTCTT 60
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 4 TGAGATGGTTATGATTCATATCTTCCTCACCGTGATGGTGGTTGGAGGCGTCAGTCTCTT 63
Query 61 CCCGGAGACGGCAGAAGCGACCGTGATGGGACCGTCGATGCAGAAGCTTACGTGGCATTA 120
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 64 CCCGGAGACGGCAGAAGCGATCGTGATGGGACCGTCGATGCAGAAGCTGACGTGGCATTA 123
Query 121 CTACAAAGTTTATAACACTTGCGAGAATGCAGAGAATTTTGTGAGGCACCAAGTTGAAAT 180
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 124 CTATAAAGTTTACAACACTTGCGAGAATGCAGAGAATTTTGTGAGGCACCAAGTTGAGAT 183
Query 181 ATTTTACAAGAACGATAAAAGTATTGCTCCCAAGCTCCTTCGTCTACTTTACTCCGATTG 240
|||||||||||||||||||||||||||||| |||||||||||||| || ||||| || ||
Sbjct 184 ATTTTACAAGAACGATAAAAGTATTGCTCCTAAGCTCCTTCGTCTCCTCTACTCAGACTG 243
Query 241 CTTTGTCTCCGGATGCGATGCATCAGTTCTACTAGAAGGTCCGAACTCAGAGAGAATGGC 300
|||||| ||||||||||||||||||||||| ||||||||||| |||||||||| ||||||
Sbjct 244 CTTTGTTTCCGGATGCGATGCATCAGTTCTTCTAGAAGGTCCAAACTCAGAGAAAATGGC 303
Query 301 GCCACAAAACAGAGGACTTGGAGGATTCGTGCTTATAGACAAAATCAAAATAGTCTTGGA 360
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 304 GCCACAAAACAGAGGACTTGGAGGATTCGTTCTCATAGACAAAATCAAAATAGTCTTGGA 363
Query 361 ACAAAGATGTCCCGGTGTTGTCTCTTGCGCCGACATTCTTAATCTTGCAACTCGGGATGC 420
||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 364 ACAGAGATGTCCTGGTGTTGTCTCTTGCGCCGACATTCTTAATCTTGCAACTCGTGATGC 423
Query 421 TGTTCATTTGGCAGGTGCACCATCTTATCCTGTGTTCACAGGCAGGAGAGATGGTTTGAC 480
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 TGTTCATTTGGCGGGTGCACCATCTTATCCTGTGTTCACAGGCAGGAGAGATGGTTTGAC 483
Query 481 CTCGGATAAGCACACCGTGGACCTACCATCGCCATCCATCTCATGGAACCAAGCCATGTC 540
|| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 484 GTCTGATAAGCAAACCGTGGACCTACCATCGCCATCCATCTCATGGGACCAAGCCATGTC 543
Query 541 TTATTTCAAATCCAGAGGCTTGAGTGTTCTTGATATGGCTACACTTCTAGGATCACATTC 600
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 544 TTATTTCAAATCCAGAGGCTTGAATGTTCTTGACATGGCTACACTTCTAGGATCACATTC 603
Query 601 AATGGGAAGAACACATTGCAGCTATGTCGTTGATCGACTCTACAATTACAACAAGACCGG 660
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 604 AATGGGGAGAACACATTGCAGCTATGTTGTTGATCGACTCTACAATTACAACAAGACCGG 663
Query 661 TAAACCAAGCCCGACTATGAACAAGTATTTCCTGTCTGAAATGGCAAAGCAATGTCCTCC 720
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 664 TAAACCAAGCCCTACTATGAACAAGTATTTCCTATCTGAAATGGCAAAGCAATGTCCTCC 723
Query 721 AAGAACGAGGAAAGGCCAGACCGATCCGCTAGTGTACCTAAACCCGGACTCAGGCTCAAA 780
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 724 AAGAACGAGGAAAGGCCAGACCGATCCGCTCGTGTACCTAAACCCGGACTCAGGCTCAAA 783
Query 781 CCACAGCTTCACAAACTCATTCTATTCAAGAATTCTATCAAACAAATCTGTACTTGAAGT 840
|||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||
Sbjct 784 CCACAGCTTCACAAGCTCATTTTACTCAAGAATTCTATCAAACAAATCTGTACTTGAAGT 843
Query 841 AGATCAACAACTGCTTTACAATGTTGACACCAAGCAAATATCTAAGGAATTCTCAGAGAG 900
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 844 AGATCAACAACTGCTTTACAATGATGACACCAAGCAAATATCTAAGGAATTCTCAGAGGG 903
Query 901 TTTTGAGGATTTCCGGAAATCATTTGCTCTTTCGATTAGCAAGGTGGGAGCGATAAATGT 960
||| |||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 904 TTTCGAGGATTTTCGGAAATCATTTGCTCTTTCGATGAGCAAGATGGGAGCGATAAATGT 963
Query 961 GTTAACTAAAACAGAAGGTGAGATACGAAAAGATTGCAGGCGTAGAAACTAAACACAAAA 1020
|||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 964 GTTAACTAAAACGGAAGGTGAGATACGAAAAGATTGCAGGCATATAAACTAAACACAAAA 1023
Query 1021 GCACTATCTCTCTCT 1035
|||| ||||||||||
Sbjct 1024 GCACAATCTCTCTCT 1038
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50736488470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5