BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483462
Length=2963
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43500.1 | Symbols: | Plant regulator RWP-RK family protein... 4281 0.0
AT3G59580.1 | Symbols: | Plant regulator RWP-RK family protein... 335 2e-90
> AT2G43500.1 | Symbols: | Plant regulator RWP-RK family protein
| chr2:18061925-18066639 FORWARD LENGTH=3239
Length=3239
Score = 4281 bits (2318), Expect = 0.0
Identities = 2799/3023 (93%), Gaps = 65/3023 (2%)
Strand=Plus/Plus
Query 1 ATGGAAAACCCTTTTGCATCCAGAGAAAAGGGTTTTGGTAATTATTCAGATATTCCAACA 60
||||||||||||||||| || ||||||||||| |||||||||||||||||| ||||||||
Sbjct 207 ATGGAAAACCCTTTTGCTTCTAGAGAAAAGGGGTTTGGTAATTATTCAGATTTTCCAACA 266
Query 61 GAACATATGGATGGTTTAAGCACAACCTTTGGTTCTGGCGTTAGGAGTTTGCTCTCTGAT 120
||||| ||||||||||||||| ||| |||||||||||||||||||| |||| ||||||||
Sbjct 267 GAACAAATGGATGGTTTAAGCTCAAACTTTGGTTCTGGCGTTAGGAATTTGATCTCTGAT 326
Query 121 GATATGCTCAACTCTTCCTCCGAGCTTATGAATTTCGACTCTTTTGCCGCATGGTGTAAC 180
|||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 327 GATATGTTCAACCCTTCCTCCGAGCTTATGAATTTCGACTCTTTGGCCGCATGGTGTAAC 386
Query 181 AGCCCTTCCGCTACTGATATCTTGTTCGCGCAATACGGTCTGTCGAACTCCCAACCTATG 240
|||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||
Sbjct 387 AGCCCTTCCGCTACTGATATATTGTTCGCCCAATATGGTCTGTCGAACTCCCAACCTATG 446
Query 241 CCTTTTGGAGCTTTCACTTCATTTCATGCAGCTGAGCCGAAGGCTACCAGTCTCACTCGT 300
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 447 CCTTTTGGAGCTTTCACTTCATTTCATGTAGCTGACCCGAAGGCTACCAGTCTCACTCGT 506
Query 301 TCGTTCCATGATTTGGAAAGCTCTTACTATGGTCAAGAAAGATCGTCAGTACAGGAATTG 360
|||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||| ||
Sbjct 507 TCGTTCTATGATTTGGAAAGCTCTTACTATGGTGAAGAAAGATCGTCAGCACAGGAAATG 566
Query 361 AGCTCTCAGTTTCATCGCTCATCAGATAGCGATGAGTTAAGTGGAAAACGGCGCAAGGTT 420
| ||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct 567 AATTCTCAGTTTCATCGCTCTTCAGATAGCGATGAGTTAAGTGGTAAACGACGCAAGGTT 626
Query 421 GTTAATCAGAAGATTGGTTTTCCTAACGTACTCAACTGTACTATTCCCAGGTCTTTGAGC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 GTTAATCAGAAGATTGGTTTTCCTAACGTACTCAACTGTACTATTCCCAGGTCTTTGAGC 686
Query 481 CACTCATTAGATGAGAAGATGCTTAAGGCATTAAGCTTATTTATGGAGTCCTCAGGTTCA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 687 CACTCATTAGATGAGAAGATGCTTAAGGCATTAAGCTTATTTATGGAGTCCTCAGGTTCA 746
Query 541 GGAGAGGGCATTTTAGCTCAAGTTTGGACCCCCATTAGGACAGGAGATCAGTACTTGCTT 600
|| |||||||||||||| |||||||||||||| || | |||||||||||||||||||||
Sbjct 747 GGTGAGGGCATTTTAGCGCAAGTTTGGACCCCTATCAAGACAGGAGATCAGTACTTGCTC 806
Query 601 AGTACTTGTGATCAGGCCTATTTGCTTGATCCGAGGCTTTCTCAGTACCGTGAAGTGTCA 660
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 807 AGTACTTGTGATCAGGCCTATTTGCTTGATCCGAGGTTTTCTCAGTACCGTGAAGTGTCA 866
Query 661 AGGAAATTTACGTTTGCTTCTGAAGCAAATCAAAGTTCTTTTCCGGGTCTTCCTGGCCGA 720
|||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 867 AGGAGATTTACGTTTGCTGCTGAAGCAAATCAATGTTCTTTTCCGGGTCTTCCTGGCCGA 926
Query 721 GTCTTTATCTCGGGAGTACCTGAATGGACATCAAACATTATGTATTACAAGGCGGATGAG 780
|||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||
Sbjct 927 GTCTTTATCTCGGGAGTACCTGAATGGACATCAAACGTTATGTATTACAAGACCGATGAG 986
Query 781 TATTTGCGCATGAAGCATGCAATTGATAATGAAGTCCGTGGTTCCATTGCAATACCTATC 840
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 987 TATTTGCGCATGAAGCATGCAATTGACAATGAAGTCCGTGGTTCCATTGCAATACCTATC 1046
Query 841 CTTGAAGCCTCCGGGACATCTTGTTGTGCTGTCATGGAACTCGTTACATCCAAGGAAAAA 900
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1047 CTTGAAGCTTCTGGGACATCTTGTTGTGCTGTCATGGAACTCGTTACATCCAAGGAAAAA 1106
Query 901 CCCAATTTTGATATGGAGATGGACTCTGTTTGCCGTGCTCTCCAGGCTGTAAACTTACGG 960
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1107 CCTAATTTTGATATGGAGATGGACTCTGTTTGCCGTGCTCTCCAGGCTGTAAACTTACGG 1166
Query 961 ACATCAGCCATTCCTCGTCCTCAGTACCTTTCAAGTAGTCAAAGAGATGCCTTAGCTGAA 1020
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1167 ACAGCAGCCATTCCTCGTCCTCAGTATCTTTCAAGTAGTCAAAGAGATGCCTTAGCTGAA 1226
Query 1021 ATACAGGATGTTCTCCGAGCAGTATGTCATGCACACAAGCTGCCCTTAGCTCTTGCCTGG 1080
||||| |||||||| ||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1227 ATACAAGATGTTCTTCGAACAGTATGTCATGCACACAAGTTGCCCTTAGCTCTTGCCTGG 1286
Query 1081 ATTCCTTGTAGAAAGGATCAATCTATAAGGGTTTCTGGACCAAAATCTGGTGAAAATTAC 1140
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1287 ATTCCTTGTAGAAAGGATCAATCTATAAGGGTTTCTGGACAAAAATCTGGTGAAAATTGT 1346
Query 1141 ATTCTTTGCATAGAAGAGACAGCTTGTTATGTGAATGATATGGAGATGGAAGGCTTTCTG 1200
|| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 1347 ATACTTTGCATAGAGGAGACAGCTTGTTATGTGAACGATATGGAGATGGAAGGCTTTGTG 1406
Query 1201 CACGCATGTTTGGAGCATTGTCTAAGAGAAAGGGAAGGGATTGTTGGTAAAGCTTTCATA 1260
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1407 CACGCATGTTTGGAGCATTGTCTAAGAGAAAAAGAAGGAATTGTTGGTAAAGCTTTCATA 1466
Query 1261 TCCAACCAGCCGTTCTTTTCTTCTGATGTGAAGGCATATGACATCAGTGAGTACCCTATT 1320
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1467 TCCAACCAGCCGTTCTTTTCTTCTGATGTGAAGGCATATGACATCAGTGAATACCCTATT 1526
Query 1321 GTTCAGCATGCTCGAAAGTACGGTCTGAATGCTGCTGTTGCTATAAAACTAAGGAGCACT 1380
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1527 GTTCAGCATGCTCGAAAGTACGGTCTGAATGCTGCTGTCGCTATAAAACTGAGGAGCACT 1586
Query 1381 TACACTGGCGAAGATGATTACATTCTTGAACTATTCTTGCCTGTAAGTATGAAAGGAAGC 1440
|||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1587 TACACTGGTGAAGATGATTACATACTTGAACTGTTCTTGCCTGTAAGTATGAAAGGAAGC 1646
Query 1441 TTGGAACAACAACTTCTTTTAGACAGCCTTTCGGGTACAATGCAGAGGATTTGTCGGACT 1500
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1647 TTGGAACAACAACTTCTATTAGACAGCCTTTCGGGTACAATGCAGAGAATTTGTCGAACT 1706
Query 1501 TTGAGAACTGTTTCAGAAGTGGGGTCAAC-AAAAAAGGAAGTGTCTAA---T---TTCCC 1553
||||||||||||||||||||||||||||| ||||||| ||| | |||| | || |
Sbjct 1707 TTGAGAACTGTTTCAGAAGTGGGGTCAACTAAAAAAG-AAGGGACTAAACCTGGATTTCG 1765
Query 1554 GCAG-A-TCAC--GTCT--TTG---G--GA-AAC-T-TGG-GAAACTTT-CAGACACGAT 1597
| || | | | |||| || | || ||| | | |||| ||| |||||| ||
Sbjct 1766 G-AGTAGTGATATGTCTAATTTCCCGCAGACAACGTCTTCAGAAAATTTTCAGACAATAT 1824
Query 1598 CATTGGATTCTGAGGTTGACTCTACTAGAAGCATATTTTCGGGTATGTCCTCTGAAAAAG 1657
|||||||||| ||| || |||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1825 CATTGGATTCCGAGTTTAACTCTACTAGAAGCATGTTTTCGGGTATGTCCTCTGATAAAG 1884
Query 1658 AAAACAGTATCACAGTATCTCAAGGCGCTTTGGAGCAGGATATGAGCAAAGCAGGAACAC 1717
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct 1885 AAAACAGTATCACAGTATCTCAAGGCACTTTGGAGCAGGATGTGAGCAAAGCAAGAACAC 1944
Query 1718 CAGAGAAGAAGAAAAGCACTACAGAGAAAAATGTGAGCTTAAGCGCTCTCCAACAACACT 1777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1945 CAGAGAAGAAGAAAAGCACTACAGAGAAAAATGTGAGCTTAAGCGCTCTCCAACAACACT 2004
Query 1778 TTTCTGGGAGTCTAAAGGATGCTGCAAAAAGCCTTGGTGGTGAGACTTCTACATTTTTTC 1837
| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
Sbjct 2005 TCTCTGGGAGTCTAAAGGATGCTGCAAAAAGCCTTGGTGGTGAGACTTCCGCATATTT-C 2063
Query 1838 CAGGCATGGATTTAATTTTTT-GTCCAACTACATTAAAACGGATATGTAGGCAACATGGG 1896
|| |||||| |||| |||||| ||||||||||||| ||||||||||| ||||||||||||
Sbjct 2064 CAAGCATGGGTTTATTTTTTTTGTCCAACTACATTGAAACGGATATGCAGGCAACATGGG 2123
Query 1897 ATCATGAGGTGGCCATCTCGTAAGATTAACAAAGTGAACAGGTCACTAAGGAAAATACAG 1956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2124 ATCATGAGGTGGCCATCTCGTAAGATTAACAAAGTGAACAGGTCACTAAGGAAAATACAG 2183
Query 1957 ACGGTACTTGACTCGGTCCAAGGTGTAGAAGGAGGACTAAAGTTTGACTCAACAACAGGC 2016
|||||||| ||||||||||||||||||||||||||||||||||| |||||| |||| |||
Sbjct 2184 ACGGTACTGGACTCGGTCCAAGGTGTAGAAGGAGGACTAAAGTTCGACTCAGCAACTGGC 2243
Query 2017 GAATTCATTGCAGTTGGACCTTTGATCCAAGAATTTGATACCCAAAAGGGTCTATCGTCT 2076
||||||||||||||| ||||||| || |||||| ||||||||||||||||||| ||||||
Sbjct 2244 GAATTCATTGCAGTTAGACCTTTTATTCAAGAAATTGATACCCAAAAGGGTCTGTCGTCT 2303
Query 2077 CATGGTAATGATGCACATGCAAGAAGAAGTCAAGAGGATATGGCTGACGATACTTCGTTC 2136
| || ||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||
Sbjct 2304 CTTGATAATGATGCACATGCAAGAAGAAGTCAGGAGGATATGCCTGACGATACTTCATTC 2363
Query 2137 GAGCTCCATGAAGCTAAATTTGTCGACAATGCCATTAAGTTAGAGGAGGATATTATCATG 2196
||||||| |||||||||| |||||||||||||||||||||||||||||||| | ||||
Sbjct 2364 AAGCTCCAGGAAGCTAAATCTGTCGACAATGCCATTAAGTTAGAGGAGGATACAACCATG 2423
Query 2197 AACCAAGCAAGAACC-GGATCATTCATGGAGATTAATGCTAGTGGTCAGCCGTGGGGTTG 2255
|| ||||||||| || ||||||||||||||| ||||||||||||||||||| |||| |||
Sbjct 2424 AATCAAGCAAGA-CCAGGATCATTCATGGAGGTTAATGCTAGTGGTCAGCCATGGGCTTG 2482
Query 2256 GATGGCCGAACAGTCTGGCTTGAATGGCAGTGAAGGAATAAAGAGCGTTTGCAACTTAAG 2315
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2483 GATGGCCAAAGAGTCTGGCTTGAATGGCAGTGAAGGAATAAAGAGCGTTTGCAACTTAAG 2542
Query 2316 CTCTCTGGAAATTTCAGATGGAATGGATCCAACAATCCGATGCAGTGGCAGTATTGTTGA 2375
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2543 CTCTGTGGAAATTTCAGATGGAATGGATCCAACAATCCGATGCAGTGGCAGTATTGTTGA 2602
Query 2376 ACCTAACAAATCCATGTCATGCAGCATATCAGATTCATCAAATGGCTCAGGTGCAGTTCT 2435
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2603 ACCTAACCAATCCATGTCATGCAGCATATCAGATTCATCAAATGGCTCAGGCGCAGTTCT 2662
Query 2436 GCGCGGAAGCTCATCTACTTCCTTGGAAGATTGGAACCAAATGAGAACCCACAACAATAA 2495
||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 2663 GCGTGGAAGCTCATCTACTTCCATGGAAGATTGGAACCAAATGAGAACCCACAACAGTAA 2722
Query 2496 TAGCGGCGAGAGTAGATCAACAACGCTGATCGTAAAGGCCACTTATAAAGAAGACACTGT 2555
|||| |||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 2723 TAGCAGCGAGAGTGGATCAACAACGCTGATCGTAAAGGCCAGTTATAGAGAAGACACTGT 2782
Query 2556 ACGTTTCAAGTTCGAGCCATCGGTTGGGTGTCCTCAGCTCTACAAAGAAGTTGGGAAACG 2615
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 2783 ACGTTTCAAGTTCGAGCCATCAGTTGGGTGTCCTCAGCTCTACAAAGAAGTTGGAAAACG 2842
Query 2616 TTTTAAACTACAAGACGGGTCGTTTCAACTGAAGTACTTGGATGATGAAGAAGAATGGGT 2675
||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2843 TTTTAAACTGCAGGACGGGTCGTTTCAGCTGAAGTACTTGGATGATGAAGAAGAATGGGT 2902
Query 2676 GATGCTGGTTACAGATTCTGATCTCCAAGAATGCTTGGAGATACTATATGGTATGGGAAA 2735
||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||
Sbjct 2903 GATGCTGGTTACAGATTCTGATCTCCAAGAATGTTTGGAGATATTACATGGTATGGGAAA 2962
Query 2736 ACACTCAGTGAAGTTTCTGGTTCGGGATTTGCCTGTCCTTATTGGTAGTTCTGGTGGCAG 2795
|||||| ||||||||||| ||||| |||||| ||| || | | |||||||||||||||||
Sbjct 2963 ACACTCGGTGAAGTTTCTCGTTCGTGATTTGTCTGCCCCTCTAGGTAGTTCTGGTGGCAG 3022
Query 2796 CAATGGTTACCTAGGAACAGG-TT-T-A--T-G-A---CA----CACACACAGTTATGTA 2841
|||||||| || |||||||| || | | | | | || ||||||||||||||||
Sbjct 3023 TAATGGTTATCTTGGAACAGGCTTATGACGTCGTAAGACATAGACACACACAGTTATGTA 3082
Query 2842 TTCCCCTGTGAAAG--T-T-GTTTATTTCTCCAGATATTAGTTTGCTTAT-----GG-A- 2890
||||| ||||||| | | ||||||||||| |||||||||| ||||||| || |
Sbjct 3083 TTCCCA-GTGAAAGAATGTTGTTTATTTCTCTAGATATTAGTATGCTTATAAATAGGCAT 3141
Query 2891 G--G-A-AAA--CAGTTTTGGTATAGTGGAGTCCGG-AGAA--TGTATATGCTTTT-CGT 2940
| | | ||| || ||||||||||||||||| | | |||| |||||||| |||| |||
Sbjct 3142 GAAGGAGAAAGACAATTTTGGTATAGTGGAGTTCAGCAGAAAATGTATATGTTTTTTCGT 3201
Query 2941 TTTATATGAATCAGAGAATAAAA 2963
|||||||||||||||||||||||
Sbjct 3202 TTTATATGAATCAGAGAATAAAA 3224
> AT3G59580.1 | Symbols: | Plant regulator RWP-RK family protein
| chr3:22009051-22012766 FORWARD LENGTH=2884
Length=2884
Score = 335 bits (181), Expect = 2e-90
Identities = 375/465 (81%), Gaps = 27/465 (6%)
Strand=Plus/Plus
Query 2370 TGTTGAACCTAACAAATCCATGTCATGCAGCATATCAGATTCATCAAATGGCTCAGGTGC 2429
||| ||||| ||| | ||||| ||| | ||||| || |||||||||||| ||||||| ||
Sbjct 2377 TGTAGAACCAAACCACTCCATATCAAGTAGCATGTCGGATTCATCAAATAGCTCAGGAGC 2436
Query 2430 AGTTCTGC-GCGGAAGCTCATCTACTTCCTTGG---AAGATTGGAACCAAATGAGAACCC 2485
|||| ||| | ||||| |||||| ||||||||| || | ||||||||||| ||||| |
Sbjct 2437 AGTTTTGCTG-GGAAGTTCATCTGCTTCCTTGGAACAAAACTGGAACCAAATAAGAACTC 2495
Query 2486 ACAACAATAATAGCGGCGAGAGTAGATCAA---CAACGCTGATCGTAAAGGCCACTTATA 2542
| ||| |||||||| || || |||||| |||| || | |||||| |||||||| |
Sbjct 2496 ATAAC---AATAGCGGTGAAAGCGGATCAAGTTCAACACTAACCGTAAAAGCCACTTACA 2552
Query 2543 AAGAAGACACTGTACGTTTCAAG-TTCGAGCCAT-CG--GTTGGGTGTCCTCAGCTCTAC 2598
||| |||||||||||||||||| || || |||| || ||||||||| |||||||||||
Sbjct 2553 GAGAGGACACTGTACGTTTCAAGCTT-GATCCATACGTTGTTGGGTGTTCTCAGCTCTAC 2611
Query 2599 AAAGAAGTTGG-GAAACGTTTTAAACTACAAGACGGGT-CGTTTCAACTGAAGTACTTGG 2656
| ||||| ||| || ||||| || || ||||| ||| | ||||| |||| |||||||
Sbjct 2612 AGAGAAG-TGGCTAAGCGTTTCAAGCTGCAAGA-AGGTGCCTTTCAGTTGAAATACTTGG 2669
Query 2657 ATGATGAAGAAGAATGGGTGATGCTGGTTACAGATTCTGATCTCCAAGAATGCTTGGAGA 2716
||||||||||||||||||||||| |||| ||||||||||||||||| |||||||| ||||
Sbjct 2670 ATGATGAAGAAGAATGGGTGATGTTGGTCACAGATTCTGATCTCCATGAATGCTTCGAGA 2729
Query 2717 TACTATATGGTATGGGAAAACACT-CAGTGAAGTTTCTGGTTCGGGATTTGCCTGT-C-C 2773
|| || |||||||| ||||||| | |||||||||||||||| || ||| | || | | |
Sbjct 2730 TATTAAATGGTATGAGAAAACA-TACAGTGAAGTTTCTGGTCCGTGATATACC-GAACAC 2787
Query 2774 TT-ATTGGTA-GTTCTGGTGGCAGCAATGGTTACCTAGGAACAGG 2816
| ||| | |||| | ||||||||||||||||| ||||||||
Sbjct 2788 CGCAATGGGAAGTTCCGCAGGCAGCAATGGTTACCTCGGAACAGG 2832
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 147290144648
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5