BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483463
Length=502
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43510.1 | Symbols: ATTI1, TI1 | trypsin inhibitor protein 1... 649 0.0
> AT2G43510.1 | Symbols: ATTI1, TI1 | trypsin inhibitor protein
1 | chr2:18067172-18067802 FORWARD LENGTH=491
Length=491
Score = 649 bits (351), Expect = 0.0
Identities = 457/504 (91%), Gaps = 24/504 (5%)
Strand=Plus/Plus
Query 1 ACATATCACCAAACCTAAAGTTAGATAAACAGAGAGAAAATGGTAAAGGCTATCGTTTCC 60
|||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1 ACATATCAACAAACCTAAAGTTAGATAAACAAAGAGAAAATGGCAAAGGCTATCGTTTCC 60
Query 61 ATCTTCGTTGTCTTTTTCATCTTCTTCTTAGTCATTTCCGATGTACCGGAGATAGAAGCG 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 ATCTTCGTTGTCTTTTTCATCTTCTTCTTAGTCATTTCCGATGTGCCGGAGATAGAAGCG 120
Query 121 CAAGGTAACGAGTGCTTGAAAGAATACGGCGGTGATGTTGGTTTCAGCTTTTGTGCGCCT 180
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 121 CAAGGTAACGAGTGCTTGAAAGAATACGGAGGTGATGTTGGTTTCGGCTTTTGTGCGCCT 180
Query 181 AGGATTTTTCCGACGTTTTGTTATACAAGATGCCGTGAGGACAAGGGAGCTAAAGGTGGA 240
|||| ||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 181 CGGATATTTCCGACGATTTGTTACACAAGATGCCGTGAGAACAAGGGAGCTAAAGGTGGA 240
Query 241 AGATGCCGTTGGGGACAGGGCAGTAACGTCAAATGCTTATGCGACTCCTGCGACGATACT 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 241 AGATGCCGTTGGGGACAGGGCAGTAACGTCAAATGCTTATGCGACTTCTGCGACGATACT 300
Query 301 CCAC-GATAAAATCTAAATAAAGAAATCGCTAATAAATGCACTATGGCTGCAATAGACGC 359
|||| | ||||||||||| | |||||||||| ||||||||| |||||| ||||||||
Sbjct 301 CCACAG-TAAAATCTAAA----GCAATCGCTAATCAATGCACTAAGGCTGCCATAGACGC 355
Query 360 AATCGCTAATAAAATACACGTTGTGTTTACGTAC-TTGCACAAGTTTTAGTCATGGTTTG 418
||| || || |||||||||| ||||||||| || ||||||||||||||||||||||
Sbjct 356 AAT---TATTA---TACACGTTGTCTTTACGTACATT-CACAAGTTTTAGTCATGGTTTG 408
Query 419 TGTAATAAATGGATGTAAATGGTCCATCCAAGTGATAATACAATAATGAATGTGAAATAA 478
||||||||||| |||| ||||||| ||||||||||| || | | | || |||| |
Sbjct 409 TGTAATAAATGAATGTGAATGGTCTATCCAAGTGATG-TA-A-T---G--TG--AAATCA 458
Query 479 GAAATAATGAAAGTGTGACTTTTG 502
||||||||||||||||||||||||
Sbjct 459 GAAATAATGAAAGTGTGACTTTTG 482
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23961688119
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5