BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483467
Length=915
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43560.1 | Symbols: | FKBP-like peptidyl-prolyl cis-trans i... 1393 0.0
> AT2G43560.1 | Symbols: | FKBP-like peptidyl-prolyl cis-trans
isomerase family protein | chr2:18073859-18075498 REVERSE LENGTH=921
Length=921
Score = 1393 bits (754), Expect = 0.0
Identities = 868/922 (94%), Gaps = 12/922 (1%)
Strand=Plus/Plus
Query 1 CGAGAGCCAAGTCAGCAAGAACCGAACG--C--A-GAAACAAAACCAGAGATTTCGTTAT 55
||||||||||||||||||||| |||||| | | ||||||||||||||||||||||||
Sbjct 1 CGAGAGCCAAGTCAGCAAGAAGCGAACGCACAAACAAAACAAAACCAGAGATTTCGTTAT 60
Query 56 CCACTGAAGTTCGTTTGCTTCTGTCAAATTTGCCAAATCGTAACCaaaaaaaGATGGCAG 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCACTGAAGTTCGTTTGCTTCTGTCAAATTTGCCAAATCGTAACCAAAAAAAGATGGCAG 120
Query 116 CTTCTTCTCCATCTCTCCTTCTACCACTAGGTTCAGTATCTAGAAATGGTCTAGCCATCA 175
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||
Sbjct 121 CTTCTTCTCCATCTCTCCTTCTACCACTAGGTTCAGCATCTAGAAATGGTCTAACCACCA 180
Query 176 AGAATCCATATTCATCAAGATATATAGCTACAAGAGTCATAGCTTCAGAAACAAGAGAGC 235
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 AGAATCCAAATTCATCAAGATATATAGCTGCAAGAGTCATAGCTTCAGAAACAAGAGAGC 240
Query 236 AAAGCTGTAAAATCAATAGTCTCTCTAGCCGTAGAGAAGCAATGCTATTGGTACTCGGCG 295
||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||
Sbjct 241 AAAGCTGTAAAATCAGTAATCTCTCTAGCCGTAGAGAAGCAATGCTTTTGGTACTCGGCG 300
Query 296 TGTCAGGCGGATTATCAATGAGCTCGCTTGCGGCTTATGCAGCCGGTTTACCTCCAGAAG 355
| ||||| ||||||||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct 301 TCTCAGGAGGATTATCAATGAGCTCACTTGCGGCGTATGCAGCTGGTTTACCTCCAGAAG 360
Query 356 ATAAACCGAGACTCTGTGAAGCCGAATGCGAGAAAGAGCTTGAAAATGTTCCAATGGTAA 415
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 361 ATAAACCAAGACTCTGTGAAGCAGAATGCGAGAAAGAGCTTGAAAATGTTCCAATGGTAA 420
Query 416 CCACAGAATCAGGGCTTCAGTATAAGGATATCAAAGTCGGTACAGGCCCTAGTCCCCCGG 475
| ||||| ||||||||||||||||||||||| ||||| |||| |||||| ||||| ||||
Sbjct 421 CTACAGAGTCAGGGCTTCAGTATAAGGATATTAAAGTTGGTAGAGGCCCGAGTCCACCGG 480
Query 476 TTGGTTTTCAGGTTGCTGCTAATTATGTGGCTATGGTTCCATCAGGGCAGATATTCGACA 535
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 481 TTGGTTTTCAGGTTGCTGCTAATTATGTGGCTATGGTTCCATCAGGGCAAATATTCGACA 540
Query 536 GTTCTCTGGAGAAAGGTCTACCGTATCTGTTTCGTGTTGGGTCTGGCCAGGTGATCAAGG 595
|||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| |
Sbjct 541 GTTCTCTGGAGAAAGGTCTACCGTATCTATTTCGCGTTGGCTCTGGCCAGGTGATCAAAG 600
Query 596 GACTTGATGAAGGAATCTTGAGTATGAAAGCTGGTGGCAAACGTAGACTCTACATTCCAG 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 601 GACTTGATGAAGGAATCTTGAGTATGAAAGCTGGTGGCAAACGTAGACTCTACATCCCAG 660
Query 656 GGCCTTTGGCCTTTCCAAAGGGTCTAACTTCAGCTCCAGGGAGGCCGAGAGTTGCGCCAA 715
|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 661 GGCCTTTGGCGTTTCCAAAGGGTCTAGTTTCAGCTCCAGGGAGGCCGAGAGTTGCGCCAA 720
Query 716 ACAGTCCGGTGGTATTTGACGTTAGCTTAGAGTTCATTCCAGGTCTCGATTCAGAGGAAG 775
|||| |||||| |||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 721 ACAGCCCGGTGATATTTGACGTGAGCTTAGAGTTCATACCAGGTCTCGATTCAGAGGAAG 780
Query 776 AGTGAAACTCTGTTTT--CAAGTGCAAAATGTAATCTTCAATACACACACAATTACAAGA 833
|||||||||||||||| |||||||||| |||||||||| ||||||| | ||||||||
Sbjct 781 AGTGAAACTCTGTTTTTTCAAGTGCAAATTGTAATCTTCCATACACA-A---TTACAAGA 836
Query 834 TTCTATGTATGATATTTTTCTCATTGTACTTCATTCATTGAAGAACATCACATTGATTAG 893
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 837 TTCTATGTATGATATTTATCTCATTGTACT-CATTCATTGAAGAACATCACATTGATTAA 895
Query 894 AAACGTCAGTATTTTTCAGTTC 915
|||||||||||||||||| |||
Sbjct 896 AAACGTCAGTATTTTTCAATTC 917
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44708390830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5