BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483469
Length=863
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43580.1 | Symbols: | Chitinase family protein | chr2:18078... 1306 0.0
AT2G43590.1 | Symbols: | Chitinase family protein | chr2:18081... 651 0.0
AT3G47540.2 | Symbols: | Chitinase family protein | chr3:17521... 246 2e-64
> AT2G43580.1 | Symbols: | Chitinase family protein | chr2:18078649-18080028
REVERSE LENGTH=981
Length=981
Score = 1306 bits (707), Expect = 0.0
Identities = 814/865 (94%), Gaps = 10/865 (1%)
Strand=Plus/Plus
Query 1 ACCCAAAGATGGCTCTCACAAAAATCTTCTTAATCGTTCTCCTCTCCCTCTTATGTTTCT 60
||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||| |
Sbjct 8 ACCCAAAGATGGCTCTCACAAAAATCTTCTTAATCCTTCTCCTATCCCTCTTAGGTTTAT 67
Query 61 ACTCTGAAACCGTCAAATCTCAAAACTGCAATTGCGCCCCAAACCTATGTTGCAGTCAGT 120
| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 68 ATTCTGAAACCGTCAAATCTCAAAACTGCGATTGCGCCCCTAACCTATGTTGCAGTCAGT 127
Query 121 TCGGTTATTGCGGCACCACTGCAGATTACTGTGGTTCTACGTGCCAATCAGGTCCTTGTA 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 128 TCGGTTATTGCGGTACCACTGCAGATTACTGTGGTTCTACGTGCCAATCAGGTCCTTGTA 187
Query 181 GAGTCGGTGGACCCCCAACCGGTGCTGGTTTGGTTGGTAGCATTGTGACACAAAATTTCT 240
|||||||||||||||| |||||||| ||||||||||||| || |||||||||| |||||
Sbjct 188 GAGTCGGTGGACCCCCTACCGGTGCCGGTTTGGTTGGTAATATCGTGACACAAATTTTCT 247
Query 241 TTAACAACATTATCAACCAAGCCGGTAATGGCTGCGCAGGAAAAA-TATTTTACACCCGC 299
||||||||||||||||||||||||||||||| ||||| ||||||| | |||||||||||
Sbjct 248 TTAACAACATTATCAACCAAGCCGGTAATGGATGCGCGGGAAAAAGT-TTTTACACCCGG 306
Query 300 GACTCTTTCATAAACGCCACCAATACTTTCCCCAGCTTTGCTAATACCGTCACTAGGCGT 359
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 307 GACTCTTTCATTAACGCCACCAATACTTTCCCCAGCTTTGCTAATACCGTTACTAGACGT 366
Query 360 GAAATTGCTACCATGTTTGCTCATTTCACTTACGAGACAGGACACTTCTGCTACATAGAA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 GAAATTGCTACCATGTTTGCTCATTTCACTTACGAGACAGGACACTTCTGCTACATAGAA 426
Query 420 GAGATAAACGGAGCGTCACGTGTCATGTGCGACCAGAACAACAGGCAATATCCATGTGCA 479
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 GAGATAAACGGGGCGTCACGTGTCATGTGCGACCAGAACAACAGGCAATATCCATGTGCA 486
Query 480 CCGGGCAAGAGCTACCATGGTCGTGGTCCGCTCCTACTATCATGGAACTTCAACTATGGA 539
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 487 CCGGCCAAGAGCTACCATGGCCGTGGTCCGCTCCTACTATCATGGAACTTCAACTATGGA 546
Query 540 GCATGCGGCCAGAGTCTTGGCCTCGACCTCCTACGCCAGCCCGAGCTGGTGAGTAGTAAC 599
||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||
Sbjct 547 GCATGCGGCCAGAGTCTCGGCTTAGACCTCCTACGCCAGCCCGAGCTGGTGAGTAGTAAC 606
Query 600 CCAGTCGTGGCTTTCAGGGCGGCTCTGTGGTTTTGGATGAAGAGTGTGAGGCCTGTGTTG 659
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||
Sbjct 607 CCAGTCGTGGCTTTCAGGACGGCTCTGTGGTTTTGGATGAAGAGCGTGAGGCCTGTATTG 666
Query 660 AACCAGGGATTTGGAGCCACCGTAAGAGCCGTCAGCGGTTTCGACTGTGATGGTAGGAAC 719
||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||
Sbjct 667 AACCAGGGATTTGGAGCCACCATAAGAGCCATCAGCGGTTTCGACTGTGACGGTAGGAAC 726
Query 720 TTAGGTGGGGTGAATGCAAGGATTGGATACTATAGAGACTATTGTGGGCAGCTTGGTGTA 779
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 727 TTAGGTGGGGTGAACGCAAGGATTGGCTACTATAGAGACTATTGTGGGCAGCTTGGTTTG 786
Query 780 GACCCTGGCGCCAACATCACTTGCTAAAACGCTCTTTGGACATACTTG-CGACCTGGCAT 838
||||||||||||||||| |||||||||||||||||| |||||||| || | || | |
Sbjct 787 GACCCTGGCGCCAACATAACTTGCTAAAACGCTCTTGGGACATACATGGC-AC--G--A- 840
Query 839 AGAGTGTTAAAGGTGAAACAAGAAG 863
| ||| |||||||||||| ||||||
Sbjct 841 A-AGTATTAAAGGTGAAATAAGAAG 864
> AT2G43590.1 | Symbols: | Chitinase family protein | chr2:18081331-18082767
REVERSE LENGTH=1074
Length=1074
Score = 651 bits (352), Expect = 0.0
Identities = 671/821 (82%), Gaps = 37/821 (5%)
Strand=Plus/Plus
Query 5 AAAGATGGCTCTCACAAAAATCTTCTTAATCGTTCTCCTCTCCCTCTTATGTTTCTACTC 64
||| |||||| |||||||||||| |||| || |||| |||| ||||||| |||||| ||
Sbjct 15 AAACATGGCTTTCACAAAAATCTCCTTAGTCCTTCTTCTCTGCCTCTTAGGTTTCTTTTC 74
Query 65 TGAAACCGTCAAATCTCAAAACTGCAATTGCGCCCCAAACCTATGTTGCAGTCAGTTCGG 124
|||||| ||||| |||||||||||| |||||| |||||||| |||||||||||||||||
Sbjct 75 TGAAACTGTCAAGTCTCAAAACTGCGGTTGCGCTCCAAACCTCTGTTGCAGTCAGTTCGG 134
Query 125 TTATTGCGGCACC-ACTGCA-G-ATTACTGTGGTTCTACG-TGCCAATCAGGTCCTTGTA 180
||| || || ||| || | | | | ||||| || | | | |||| ||||||||||||||
Sbjct 135 TTACTGTGGTACCGAC-G-ATGCA-TACTGCGG-TGTTGGATGCCGATCAGGTCCTTGTA 190
Query 181 GA-GTCGGTGGACCCCCAACCGGTGCTGGTTTGGTTGGTAGCATTGTGACACAAAATTTC 239
|| || ||||| |||| ||||| | || | ||| |||||||||||||||||| ||||
Sbjct 191 GAGGT-AGTGGAACCCCGACCGGAG--GG-TCGGTCGGTAGCATTGTGACACAAGGTTTC 246
Query 240 TTTAACAACATTATCAACCAAGCCGGTAATGGCTGCGCAGGAAAAATATTTTACACCCGC 299
|||||||| |||||||||||||| |||||||| ||||| || |||| ||| ||||||||
Sbjct 247 TTTAACAATATTATCAACCAAGCTGGTAATGGTTGCGCGGGGAAAAGATTCTACACCCGT 306
Query 300 GACTCTTTCATAAACGCCACCAATACTTTCCCCAGCTTTGCTAATACCGTCACTAGGCGT 359
||||||||| | |||||| | ||||||||||||| |||||| ||| | || || || |||
Sbjct 307 GACTCTTTCGTTAACGCCGCTAATACTTTCCCCAACTTTGCCAATTCTGTTACCAGACGT 366
Query 360 GAAATTGCTACCATGTTTGCTCATTTCACTTACGAGACAGGACACTTCTGCTACATAGAA 419
|||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||
Sbjct 367 GAAATTGCTACCATGTTTGCTCATTTCACTCACGAGACCGGACATTTCTGCTACATAGAA 426
Query 420 GAGATAAACGGAGCGTCACGTGTC-ATGTGC--GACCAG-AACAACAGGCAATATCCATG 475
||||| |||||||| ||||| | | ||| || ||| |||| || ||||| |||||
Sbjct 427 GAGATTAACGGAGCAACACGTAACTAC-TGCCAGAGCAGCAACA-CA--CAATACCCATG 482
Query 476 TGCACCGGGCAAGAG-CTACCAT-GGTCGTGGTCCGCTCCTACTATCATGGAACTTCAAC 533
||||||||| || || |||| | |||||||||||| ||| |||||||||||||| ||||
Sbjct 483 TGCACCGGGAAA-AGGCTACT-TCGGTCGTGGTCCGATCCAACTATCATGGAACTACAAC 540
Query 534 TATGGAGCATGCGGCCAGAGTCTTGGCCTCGACCTCCTACGCCAGCCCGAGCTGGTGAGT 593
|| ||||| || || || ||||| || || ||||| |||||||||||||| || ||| ||
Sbjct 541 TACGGAGCGTGTGGTCAAAGTCTCGGTCTTGACCTTCTACGCCAGCCCGAACTTGTGGGT 600
Query 594 AGTAACCCAG-TCGTGGCTTTCAGGGCGGCTCTGTGGTTTTGGATGAAGAGTGTGAGGCC 652
|| |||||| | || ||||||||| ||| | |||||||||||||||| || || |||||
Sbjct 601 AGCAACCCAACT-GTAGCTTTCAGGACGGGTTTGTGGTTTTGGATGAATAGCGTAAGGCC 659
Query 653 TGTGT-TGAACCA-GGGATTTGGAGCCACCGTAAGAGCCGTCAGCGGTTTCGACTGTGAT 710
|| | ||||||| ||| |||||||||||| | ||||| | | || | || ||| |
Sbjct 660 GGT-TCTGAACCAAGGG-TTTGGAGCCACCATTAGAGCTATTAATGGAATGGAATGTAAC 717
Query 711 GGTAGG-AACTTA-GGTGGGGTGAATGCAAGGATTGGATACTATAGAGACTATTGTGGGC 768
||| || || || |||| || || |||||||||||||||||||||||||||||||| |
Sbjct 718 GGT-GGTAA-TTCCGGTGCAGTCAACGCAAGGATTGGATACTATAGAGACTATTGTGGAC 775
Query 769 AGCTTGGTGTAGACCCTGGCGCC-AACATCACTTGCTAAAA 808
|||||||||| |||||||| || ||| | | |||||||||
Sbjct 776 AGCTTGGTGTGGACCCTGGT-CCTAACCTTAGTTGCTAAAA 815
> AT3G47540.2 | Symbols: | Chitinase family protein | chr3:17521029-17522624
FORWARD LENGTH=1024
Length=1024
Score = 246 bits (133), Expect = 2e-64
Identities = 241/293 (82%), Gaps = 8/293 (3%)
Strand=Plus/Plus
Query 170 AGGTCCTTGTAGAGTCGGTGGACCCCCAACCGGTGCTGGTTTGGTTGGTAGCATTGTGAC 229
||||||||||| || || |||| || ||| || ||| | | || |||||||||||||
Sbjct 60 AGGTCCTTGTATAGGCGCTGGAACCACAAGCGCTGCCGAATCAGTCAGTAGCATTGTGAC 119
Query 230 ACAAAATTTCTTTAACAACATTATCAACCAAGCCGGTAATGGCTGCGC-AGGAAAAATAT 288
|||| |||||||||||||||||||||||||||||||||||||||| | || ||||| ||
Sbjct 120 ACAAGGTTTCTTTAACAACATTATCAACCAAGCCGGTAATGGCTGCACGAG-AAAAAGAT 178
Query 289 TTTACACCCGCGACTCTTTCATAAACGCCACCAATACTTTCCCCAGCTTTGCTAA-TACC 347
| ||||||||||||||||||| |||| | |||| ||| || | |||||| || | ||
Sbjct 179 TCAACACCCGCGACTCTTTCATTGACGCTGCTAATAATTTTCCAAACTTTGC-AAGTTCC 237
Query 348 GTCACTAGGCGTGAAATTGCTACCATGTTTGCTCATTTCACTTACGAGACAGGACACTTC 407
|| || || ||||||||||| | ||||||||||||| ||||| ||||||| |||||||||
Sbjct 238 GTTACAAGACGTGAAATTGCAAGCATGTTTGCTCATGTCACTCACGAGACCGGACACTTC 297
Query 408 TGCTACATAGAAGAGATAAACGGAGCG-TCACGTG-TCATGTGCGACCAGAAC 458
|||||||||||||| ||||| | | | ||||||| | | ||||||| |||||
Sbjct 298 TGCTACATAGAAGAAATAAA-GAAAAGGTCACGTGGT-AGGTGCGACGAGAAC 348
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42096215186
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5