BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483471
Length=810
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43600.1 | Symbols: | Chitinase family protein | chr2:18086... 1127 0.0
> AT2G43600.1 | Symbols: | Chitinase family protein | chr2:18086049-18087018
REVERSE LENGTH=822
Length=822
Score = 1127 bits (610), Expect = 0.0
Identities = 677/709 (95%), Gaps = 5/709 (1%)
Strand=Plus/Plus
Query 104 ATGGGGTTTCTGTGGCACCAAAGATGATTACTGCGGATTCTTTTGTTTCAGTGGCCCTTG 163
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 117 ATGGGGTTTCTGTGGCACCAAAGATGAATACTGCGGATTTTTTTGTTTCAGTGGCCCTTG 176
Query 164 CAATATCAAGGGAAAATCCTACGGATATGACTACAACGTGGATGCC--TCCACGTGGTAA 221
|||||||||||||||||| |||||||| ||||||||||| |||||| ||||||||||||
Sbjct 177 CAATATCAAGGGAAAATCATACGGATACGACTACAACGTTGATGCCGGTCCACGTGGTAA 236
Query 222 AATAGAGACCGTTATCACACCAGCGTTGTTCGATAGCATCATGAGCAAAGTCGAAAGCAA 281
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 237 AATAGAAACCGTTATCACATCAGCGTTGTTCGATAGCATCATGAGCAAAGTCGAAAGCAA 296
Query 282 CTGCTCGGCAAAAGGATTCTACACTTATGAGGCTTTCATCACTGCTTTCAAATCGTTTGG 341
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 297 CTGCTCGGCAAAAGGATTCTACACTTATGAGGCTTTCATTACTGCTTTCAAATCTTTTGG 356
Query 342 AGCTTACAAAGGAAAGGTGGCTAAACGTGAAATCGCTGCCATATTGGCTCATTTCTCATA 401
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 357 AGCTTACAAAGGAAAGGTGGCTAAACGTGAGATCGCTGCTATATTGGCTCATTTCTCATA 416
Query 402 TGGATCTAAAAGTTTTTGTGACAAAGAAGAAATATCAAACGAGAGGTACTGTTCAAAGAG 461
|||||||||||||||||| |||||||||||||||| |||||||| || |||||||||||
Sbjct 417 CGGATCTAAAAGTTTTTGTTACAAAGAAGAAATATCGAACGAGAGATATTGTTCAAAGAG 476
Query 462 CAAGAAGTACCCTTGTGAACCGGGGAAAAACTACTTTGGTCGCGGTTTGCTACAATCAAT 521
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 477 CAAGAAGTACCCTTGTGAACCGGGGAAAAACTACTATGGTCGTGGTTTGCTACAATCAAT 536
Query 522 CACATGGAACGAGTATTATGGTGCTGCCGGCAAGCACCTCGGGCTACCTCTGTTGAAGGA 581
|||||||||||||||||| ||||| | ||||||||||||||||||||||| |||||||
Sbjct 537 CACATGGAACGAGTATTACGGTGC--C-GGCAAGCACCTCGGGCTACCTCTACTGAAGGA 593
Query 582 TCCAGATCTGGTGGCTCGTAGTCCAGAAGTTGCTTTCAAATTCGCAATGTGGTTCTGGAA 641
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 TCCAGATCTGGTGTCTCGTAGTCCAGAAGTTGCTTTCAAATTCGCAATGTGGTTCTGGAA 653
Query 642 TAGAAACGTGCGTCCGGCTTTGTACTTAGGATTTGGAGAAATCACAAAGAGAGTTGATGG 701
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 TAGAAACGTGCGTCCCGCTTTGTACTTAGGATTTGGAGAAATCACAAAGAGAGTTGATGG 713
Query 702 CCGTGAATGTGGTAACTGGCGTCGTGATGATACGAAGAACAAGGTTAAGCAATACATAGA 761
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 714 CCGTGAATGTGGTAACTGGCGTCGCGATGATACGAAGAACAAAGTTAAGCAATACATAGA 773
Query 762 GTTCTGCGAGATGCTTGGGGTAACTCCTGATCAAGGTCTAGATTGTTAA 810
|||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 774 GTTCTGCGAGATGCTTGGAGTAACTCCTGATCAAGGTCTCGATTGTTAA 822
Score = 111 bits (60), Expect = 8e-24
Identities = 63/64 (98%), Gaps = 1/64 (2%)
Strand=Plus/Plus
Query 41 TTTT-CCTCTTCATTCTAGCAATTTTGGCCGAGACCGTGTTCTCGCAGAACTGCATGGAT 99
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 22 TTTTCCCTCTTCATTCTAGCAATTTTGGCCGAGACCGTGTTCTCGCAGAACTGCATGGAT 81
Query 100 ACTA 103
||||
Sbjct 82 ACTA 85
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39433805395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5