BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483472
Length=1094
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43610.1 | Symbols: | Chitinase family protein | chr2:18087... 1720 0.0
> AT2G43610.1 | Symbols: | Chitinase family protein | chr2:18087840-18089224
REVERSE LENGTH=1104
Length=1104
Score = 1720 bits (931), Expect = 0.0
Identities = 1046/1099 (95%), Gaps = 17/1099 (2%)
Strand=Plus/Plus
Query 1 CACAACTCT-CCCTCCAAAACATTCCATCAAAGAAAGAAAGAAAAATGGCGACACAAAAT 59
||||||||| |||| |||||||||||||||||| | || |||||||||||||||||||
Sbjct 2 CACAACTCTCCCCT-CAAAACATTCCATCAAAG---G-AA-AAAAATGGCGACACAAAAT 55
Query 60 GGGATTTC-GAAAAACGCTCTCATCATTTTCCTCTTCACTCTAACCATCATGACAGAAAC 118
| || ||| |||||| |||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 56 GCGA-TTCTGAAAAAAGCTCTCATCATTTTCCTCTTTACTCTAACCATCATGACAGGAAC 114
Query 119 CGCGTTTTCACAAAACTGCGGTACAACCGGGTGTAAAGGCAACATGTGCTGCAGCAGGTG 178
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 115 CGCGTTTTCACAAAACTGTGGTACAAACGGGTGTAAAGGCAACATGTGCTGCAGCAGGTG 174
Query 179 GGGATATTGTGGTACCACAAAAGCCTACTGTGGCACTGGCTGTCAGAGTGGACCTTGCAA 238
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 175 GGGATATTGTGGTACCACAAAAGCCTACTGTGGCACTGGGTGCCAGAGTGGACCTTGCAA 234
Query 239 CTCTAAACCTAAACCTACTCCGACTCCCAGCGGTAGTGGCGGTCTAAATGCTGGTCCTCG 298
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 235 CTCTAAACCTAAACCTACTCCGACTCCAAGCGGTAGTGGCGGTCTAAATGCTGGTCCTCG 294
Query 299 TGGTACCATAGCGAGCGTTGTCACACCAGCGTTCTTCAACAGCATCATGAGTAAAGTCGG 358
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 295 TGGTACCATAGCAAGCGTTATCACACCAGCGTTCTTCAACAGCATCATGAGTAAAGTCGG 354
Query 359 CAGCGGTTGCCCAGCCAAAGGGTTTTACACTCGCCAGGCTTTCATCGCGGCCGCTGAATC 418
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 355 AAGCGGTTGCCCAGCGAAAGGGTTTTACACTCGCCAGGCTTTCATCGCAGCCGCTGAATC 414
Query 419 CTTCGCAGCCTACAAAGGAACTGTTGCTAAGCGTGAGATTGCCGCCATGTTGGCTCAGTT 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 GTTCGCAGCCTACAAAGGAACTGTTGCTAAGCGTGAGATTGCCGCCATGTTGGCTCAGTT 474
Query 479 CTCTCACGAATCTGGAAGTTTTTGTTACAAAGAAGAAATAGCCAGAGGAAGGTATTGTTC 538
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 475 CTCTCACGAATCTGGAAGTTTTTGTTACAAAGAAGAAATAGCCAGAGGAAGGTACTGCTC 534
Query 539 ACCAAGCACAACATATCCTTGTCAACCGGGCAAGAACTACTACGGTCGTGGCCCGATCCA 598
||||||||||||||||||||||||||| || ||||||||||| ||||| || ||||||||
Sbjct 535 ACCAAGCACAACATATCCTTGTCAACCCGGAAAGAACTACTATGGTCGCGGTCCGATCCA 594
Query 599 AATCACATGGAACTACAACTATGGTGCAGCCGGAAAGTTCCTTGGACTTCCTCTCTTGAC 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 AATCACATGGAACTACAACTATGGTGCAGCCGGAAAGTTCCTTGGACTTCCTCTCTTGAA 654
Query 659 GGACCCAGATATGGTGGCTCGTAGCCCAACTGTGGCTTTCAAGTGTGCCATGTGGTTTTG 718
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 655 GGACCCAGATATGGTGGCTCGTAGCCCAACTGTGGCTTTCCAGTGTGCCATGTGGTTTTG 714
Query 719 GAACAAGAATGTGCGTCCGGTTTTGAGCCAAGGGTTTGGTGCAACCACGAGGAGGATCAA 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 GAACAAGAATGTGCGTCCGGTTTTGAGCCAAGGGTTTGGTGCAACCACGAGGAGGATCAA 774
Query 779 CGGTGGTGAATGTAACGGTGGGCGTCCAGCTGCAGTGCAGAGCAGGGTTAACCATTACTT 838
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 CGGTGGTGAATGTAATGGTGGGCGTCCAGCTGCAGTGCAGAGCAGGGTTAACCATTACTT 834
Query 839 GGACTTCTGCAAGAAGCTTGGGGTCACTCCTGGAACCAATCTCTCATGTTGAAGACACTA 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 GGACTTCTGCAAGAAGCTTGGGGTCACTCCTGGAACCAATCTCTCATGTTGAAGACACTA 894
Query 899 CTACTTTATGAGGGTTTT-CTATTAATGTCGTGTGGGTTAAGAATTTCGTGTCGAATAAA 957
||| |||||||||||||| | ||||||||||| ||| ||||||||||||| ||||||||
Sbjct 895 CTAGTTTATGAGGGTTTTTC-ATTAATGTCGTCTGG-TTAAGAATTTCGTATCGAATAA- 951
Query 958 TAAAGTGAAGTCGAAAATACTAGAATTTATAAAACT-GTAAGAGATTAGAAGTCATATTG 1016
||||||||||||||||||||||||| |||||||| | |||||||||||||||| ||||||
Sbjct 952 TAAAGTGAAGTCGAAAATACTAGAACTTATAAAATTTGTAAGAGATTAGAAGTTATATTG 1011
Query 1017 TGTGGTTGGTGTCTCTTAAGGTAACTG-AGTTGTGTGTTTGTTTGTATCCGCGCGCTAGC 1075
|||||||| ||||||||||||||||| | ||||||||| |||||||||||| |||||||
Sbjct 1012 TGTGGTTGATGTCTCTTAAGGTAACTATA-TTGTGTGTT-GTTTGTATCCGCTCGCTAGC 1069
Query 1076 ATAACTAATAAAAATGGAA 1094
|||| ||||||| ||||||
Sbjct 1070 ATAAGTAATAAAGATGGAA 1088
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53614182060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5