BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483474
Length=1028
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43630.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1583 0.0
AT3G59640.1 | Symbols: | glycine-rich protein | chr3:22028781-... 331 7e-90
> AT2G43630.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast, nucleus, chloroplast
envelope; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: glycine-rich protein (TAIR:AT3G59640.2); Has 67 Blast
hits to 67 proteins in 20 species: Archae - 0; Bacteria
- 4; Metazoa - 9; Fungi - 1; Plants - 49; Viruses - 2; Other
Eukaryotes - 2 (source: NCBI BLink). | chr2:18095775-18097488
FORWARD LENGTH=1128
Length=1128
Score = 1583 bits (857), Expect = 0.0
Identities = 960/1009 (95%), Gaps = 9/1009 (1%)
Strand=Plus/Plus
Query 27 AAAAAATCGAATTCTTTCTCTCCAAGCGACAACTAGGGCTTCG--AGTTCTCTGTCTCGT 84
||||||| ||||||||||||||||||||| |||||||| |||| || |||||||||| |
Sbjct 51 AAAAAATTGAATTCTTTCTCTCCAAGCGA-AACTAGGGTTTCGAAAG-TCTCTGTCTCAT 108
Query 85 CAAGGCTTCGAAAAGAAAGTGATTGCATTAAGAGAAGCATTGGGAT-TAAGATGAGCTTT 143
||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 109 CAAAGCTTCGAAAAGAAAGTGATTGCATTAAGAGAAACATTGGGATAAAAGATGAGCTTT 168
Query 144 ACTCAGGCTAATTGTTTTCGACCATCTTACTATCCTGCAAGGATAACACGACCAAATTGT 203
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 169 ACTCAGGCTAATTGTTTTCGACCATCCTACTATCCTGCAAGGATAACACGACCAAATTGC 228
Query 204 GTCTCCAGTGTATCAATTAGGTCTTCAGTACGCTTTGATTACTGCCCGCGTACCTCATTT 263
||||||||||| | |||||||||||||||||||||||| ||| |||||||||||| |||
Sbjct 229 ATCTCCAGTGTACCTATTAGGTCTTCAGTACGCTTTGATCACTTCCCGCGTACCTCGTTT 288
Query 264 ACGCTTCGAGCAACTGCTGCAGTGTCTACTCAGTTTTCGCCTCTTCTTAATCATCGCCGT 323
|| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 289 ACTCTTCGAGCTACTGCTGCAGTGTCTACTCAGTTTTCGCCTCTTCTTGATCATCGCCGT 348
Query 324 CGTTTACCTGCTGGGAAATCGAAACAAAGTCCGGCTGTGTGCTTATTTGGTGGGAAAGAT 383
||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 349 CGTTTACCTACTGGGAAATCGAAACAAAGTTCTGCTGTGTGCTTATTTGGTGGGAAAGAT 408
Query 384 AAACCTGATGGTAGTGATGAGATATCGCCATGGAAAGCAATAGAGAAAGCTATGGGGAAG 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 AAACCTGATGGTAGTGATGAGATATCGCCATGGAAAGCAATAGAGAAAGCTATGGGGAAG 468
Query 444 AAATCAGTTGAAGATATGTTGCGGGAGCAGATACAAAAGAAAGATTTTTATGATACTGAC 503
||||| ||||||||||||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 469 AAATCGGTTGAAGATATGTTGCGAGAGCAGATACAGAAGAAAGACTTTTATGATACTGAC 528
Query 504 AGCGGCGGCAACATTCCTCCACGT---GGAGGCAGTGGTGGCAGTGGTGGAAATGGTGAG 560
|| ||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 529 AGTGGCGGCAACATGCCTCCACGTGGAGGAGGCAGTGGTGGCGGTGGTGGAAATGGTGAG 588
Query 561 GAGCGTCCTGAAGGGTCAGGAGGAGAAGATGGTGGTCTTGCTGGGATTGCAGATGAAACC 620
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 589 GAGCGTCCTGAAGGGTCAGGAGGAGAAGATGGTGGTCTTGCTGGGATCGCAGATGAAACT 648
Query 621 TTGCAAGTGGTTTTGGCAACCTTAGGCTTCATCTTTTTGTACACCTACATTATCACTGGG 680
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 649 TTGCAAGTGGTTTTGGCGACCTTAGGCTTCATCTTTTTGTACACATACATTATCACTGGG 708
Query 681 GAGGAATTGGTCAAGCTTGCAAGGGATTACATTAGGTTTCTTATGGGAAGACCTAAGACT 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 GAGGAATTGGTCAAGCTTGCAAGGGATTACATTAGGTTTCTTATGGGAAGACCTAAGACT 768
Query 741 GTTCGATTGACCCGAGCCATGGATGGTTGGAACGGATTCTTGGAGAAGATGTCGAGGCAA 800
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 769 GTTCGATTGACCCGAGCCATGGATAGTTGGAACGGATTCTTGGAGAAGATGTCGAGGCAA 828
Query 801 AGAGTGTATGATGAGTATTGGCTAGAAAAGGCGATCATCAACACGCCAACCTGGTATGAC 860
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 829 AGAGTGTATGATGAGTATTGGCTAGAAAAGGCGATCATCAACACACCAACCTGGTATGAT 888
Query 861 AGCCCCGAGAAGTACAGACGTGTTATCAAGGCTTATGTGGATTCAAATTCTGATGAAGCT 920
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 889 AGCCCTGAGAAGTACAGACGTGTTATCAAGGCTTATGTTGATTCAAATTCTGATGAAGCT 948
Query 921 TATGTGGACTCAAATTCTGATGAAGTATCTTACTAGGTTAGGAACAGGAAGAGATCCATA 980
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 949 TATGTGGAATCAAATTCTGATGAGGTATCTTACTAGGTTAGGAACAGGAAGAGATCCATA 1008
Query 981 ATAACAATTGAGttttttt-CTTATTGTTTGAAATTAAGAATCAGTTTC 1028
||||||||||||||||||| |||| ||||||||||| ||||||||||||
Sbjct 1009 ATAACAATTGAGTTTTTTTTCTTAGTGTTTGAAATTTAGAATCAGTTTC 1057
> AT3G59640.1 | Symbols: | glycine-rich protein | chr3:22028781-22030445
FORWARD LENGTH=982
Length=982
Score = 331 bits (179), Expect = 7e-90
Identities = 596/785 (76%), Gaps = 78/785 (10%)
Strand=Plus/Plus
Query 104 TGATTGCATTAAGAGAAG-CATTGGGATTA-AGATGAGCTTTACTCAGGCTAATTGTTTT 161
||| || ||| ||||||| ||||| ||| | ||||||||| ||| |||||||| | | |
Sbjct 65 TGA-TGTATTGAGAGAAGCCATTGAGATAAGAGATGAGCTCTACGCAGGCTAA-TCTATG 122
Query 162 C-GACCAT-CTTACTATC-CTGCAAGGATAACACGACCAA-ATTGTGTCTCCAGTGTATC 217
| |||||| ||| | || |||||||| ||| | | ||| | |||||| |||| | |
Sbjct 123 CAGACCATCCTT-GT-TCTGTGCAAGGACAACGCAAACAAGA-CATGTCTCTAGTGCACC 179
Query 218 AATTAGGTCTTCAGTACGCTTTGATTACT-GCCCGCGTACCTC-ATTTACGC--TTCGAG 273
||| ||| ||| ||||||||||||| | | || | | || | | ||| || |||| |
Sbjct 180 TTTTATGTCGTCATTACGCTTTGATTA-TCGACCAC-T-CCCCAAATTA-GCTATTCGGG 235
Query 274 CAACTGC-T--GCA--G-TGTCTACTCAGTTTTCGCCTCTTCTTAATCATCGCCGTCGTT 327
|| |||| | || | ||||| |||||||||||||||| | |||||||| | | |
Sbjct 236 CATCTGCATCATCATCGATGTCTTCTCAGTTTTCGCCTCTACAGAATCATCG-C-T-G-- 290
Query 328 TACCTGCTGGGAAATC-GAAACAAAGTCCGGCTGTGTGCTTATTTGGTGGGAAAGATAAA 386
| | || |||| || ||| |||| | |||||| ||| |||||||||| |||||
Sbjct 291 ---C--C--GG-AATCAGAGGCAAGGTCCTGTTGTGTGTTTACTTGGTGGGAAGGATAAG 342
Query 387 CCTGATGGTAGTGATGAG--AT-ATCGCCATGGAAAGCAATAGAGAAAGCTATGGGGAAG 443
|| | |||||| ||||| || ||| ||||| |||| || |||||||| |||||||||
Sbjct 343 TCTAACGGTAGTAATGAGCTATCATCAACATGGGAAGCTATTGAGAAAGCAATGGGGAAG 402
Query 444 AAATCAGTTGAAGATATGTTGCGGGAGCAGATACAAAAGAAAGATTTTTATGATACTGAC 503
||||||||||||||||||||||| |||||||||||||||||||| | |||
Sbjct 403 AAATCAGTTGAAGATATGTTGCGTGAGCAGATACAAAAGAAAGAC----A-----CTG-- 451
Query 504 AGCGGCGGCAACATTCCTCCACGTGGA-G-GCAGT-GGTGGCAGTGGTGGAAATGGTGAG 560
||||| | |||||||||| ||| | | || || || | ||| ||||||||| |
Sbjct 452 -GCGGC---A---TTCCTCCACGAGGACGAGGAGGAGGGGGTGGCGGTAGAAATGGTG-G 503
Query 561 GA-----GCGTCCTGAAGGGTCAGGAGGAGAAGATGGTGGTCTTGCTGGGATTGCAGATG 615
|| | ||| || ||| ||| ||| |||||||||||||||||| | ||| ||||
Sbjct 504 GAATAATGGGTC-TGGAGGCTCATCAGGGGAAGATGGTGGTCTTGCTAGTTTTGGGGATG 562
Query 616 AAAC-CTTGCAAGTGGTTTTGGCAACCTTAGGCTTCATCTTTTTGTACACCTACATTATC 674
|||| || ||||||||| || ||||||||||||||||||||| ||||| |||||| |||
Sbjct 563 AAACTCT-GCAAGTGGTATTAGCAACCTTAGGCTTCATCTTTCTGTACTTCTACATCATC 621
Query 675 ACTGGGGAGGAATTGGTCAAG-CTTGCAAGGGATTACATTAGGTTTCTTATGGGAAGACC 733
| ||||||||| ||| || | |||||||| ||||||||||||| ||||| ||||||||
Sbjct 622 AATGGGGAGGAGTTGTTCC-GTCTTGCAAGAGATTACATTAGGTACCTTATAGGAAGACC 680
Query 734 TAAGACTGTTCGATTGACCCGAGCCATGGATGGTTGGAACGGATTCTTGGAGAAGATGTC 793
|||| |||| | ||||||||| ||||| ||||||| ||||||| |||||||||||
Sbjct 681 CAAGAGTGTTAGGCTGACCCGAGTTATGGAAGGTTGGAGTAGATTCTTCGAGAAGATGTC 740
Query 794 GAGGCAAAGAGTGTATGATGAGTATTGGCTAGA-A--AAGGCGATCATCAACACGCCAAC 850
|||| ||| ||||||| | ||||| |||||| | | ||| |||||||||||| | | ||
Sbjct 741 GAGGAAAAAAGTGTATAACGAGTACTGGCTAAAGATTAAG-CGATCATCAACAAGTCTAC 799
Query 851 CTGGT 855
|||||
Sbjct 800 CTGGT 804
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50384849441
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5