BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483476
Length=654
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43640.1 | Symbols: | Signal recognition particle, SRP9/SRP... 883 0.0
> AT2G43640.1 | Symbols: | Signal recognition particle, SRP9/SRP14
subunit | chr2:18097406-18099130 REVERSE LENGTH=746
Length=746
Score = 883 bits (478), Expect = 0.0
Identities = 612/673 (91%), Gaps = 24/673 (4%)
Strand=Plus/Plus
Query 1 ATACTCGTCTTTTGACTTGTGGCGAC-TCCTTTTTACCG-A-A-TTTCCTCCGGCCGGTG 56
|||| |||||||||| |||||||||| |||||||||||| | | ||||||||||||||
Sbjct 1 ATACCCGTCTTTTGATTTGTGGCGACTTCCTTTTTACCGAAGAGACTCCTCCGGCCGGTG 60
Query 57 AGTTTTTGGAAGCA-CTC-TC-TCTGTTGTGTTTTATTTTTCTCAGTGATCTGAGTGATA 113
|||||| ||| ||| || || || | | | || | | |||| || ||||||||||||
Sbjct 61 AGTTTTCGGACGCAGATCATCATCAG--AT-TCTTGTCTCTCTCTGTTATCTGAGTGATA 117
Query 114 AGAAGT-CTTTCGAGAGCTTGAGGATCTG-AAGAAAATATCCATCTGCGGTTTAACAATG 171
|||||| |||| || ||||||||||||| || || ||||||||||||||||||||||||
Sbjct 118 AGAAGTATTTTC-AGTGCTTGAGGATCTGCAA-AAGATATCCATCTGCGGTTTAACAATG 175
Query 172 GTTCTATTACAGTTGGATCCATTCCTCAATGAACTCACGAGCATGTTTGAGAAAAGCAAA 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 GTTCTATTACAGTTGGATCCATTCCTCAATGAACTCACGAGCATGTTTGAGAAAAGCAAA 235
Query 232 GAGAAGGGTTCTGTGTGGGTTACTTTGAAAAGATCATCTCTGAAGTCTAAGGTGCAGAAG 291
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 236 GAGAAGGGTTCTGTGTGGGTTACTTTGAAAAGATCATCTCTCAAGTCTAAGGTGCAGAAG 295
Query 292 AGGAAACTAAGTTCAGCTGGAGAATCCATTGAATACAGATGCCTTATCCGAGCAACTGAT 351
|||||||| || |||| |||||||||||||||||||||||||||||| |||||||| |||
Sbjct 296 AGGAAACTGAGCTCAGTTGGAGAATCCATTGAATACAGATGCCTTATTCGAGCAACCGAT 355
Query 352 GGAAAGAAAACAGTTTCTACTTCGGTTGGTGCTAAGGATCACCAGAGATTTCAAGCATCA 411
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 GGAAAGAAAACTGTTTCTACTTCGGTTGGTGCTAAGGATCACCAGAGATTTCAAGCATCA 415
Query 412 TATGCCACCATTCTTAAGGCCCACATGACTGCTTTgaagaagagggaaaggaaagaccgg 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 TATGCCACCATTCTTAAGGCCCACATGACTGCTTTGAAGAAGAGGGAAAGGAAAGACCGG 475
Query 472 aagaaacccacagaggcagagaagaaagaaggCGCTTCAACCACTAAATCTAAGAAACTT 531
|||||| | ||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 476 AAGAAATCGACAGAGGCAGAGAAGAAAGAAAGCACTTCAACCACTAAATCTAAGAAACTT 535
Query 532 TGATTTCTCCTCTTGTGTTTCTCATTGATTTGCAATTGCTGCTTAAGAATTGAATTTTGA 591
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 536 TGATTTCTCCTTTTGTGTTTCTCATTGATTTGCAATTGCTGCTTAAGAGTTGAATTTTGA 595
Query 592 AAG--AT--------CTAAAAGATTTTGACTTATGTCACAATAGAGATTTTGGCTTGCGT 641
||| || ||||||||||||||||| ||| | |||||||||||||| |||| |
Sbjct 596 AAGCTATTGAAAGATCTAAAAGATTTTGACTTGTGTTATAATAGAGATTTTGGTTTGCAT 655
Query 642 TTGCCTTTCCCTC 654
|||| ||||||||
Sbjct 656 TTGCTTTTCCCTC 668
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31597278463
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5