BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg483478

Length=462
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G43660.2 | Symbols:  | Carbohydrate-binding X8 domain superf...   627    4e-179


> AT2G43660.2 | Symbols:  | Carbohydrate-binding X8 domain superfamily 
protein | chr2:18103751-18104569 REVERSE LENGTH=463
Length=463

 Score =  627 bits (339),  Expect = 4e-179
 Identities = 425/465 (91%), Gaps = 12/465 (3%)
 Strand=Plus/Plus

Query  1    CAAAGACATCAAACAAAAACAAACATGACTAAAGCACAAATATGTTTTTCTTTCATCATC  60
            ||||||||||||||||||||||| ||| |||||||||||||||| ||| |||||||||||
Sbjct  1    CAAAGACATCAAACAAAAACAAATATGCCTAAAGCACAAATATGGTTTCCTTTCATCATC  60

Query  61   TTGTTATACATCTCATCAGTAGGAAATTTCATGAGAGTCAATGCACAGGCACCGGGCCAA  120
            ||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct  61   TTGTTATGCATCTCATCAGTAGGAAGTTTCATGAGAGTCAATGCACAAGCACCGGGCCAA  120

Query  121  GGGAGTTGGTGTGTGGCTAAGCCTGGCACGCCGATCGAACAACTTGTAAAAAACTTAAAC  180
            |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct  121  GGGAGTTGGTGTGTGGCTAAGCCTGGCACGCCGATCAAACAACTTGTAAAGAACTTAAAC  180

Query  181  TACGTGTGTTCGAATTCAGGAAT-TC-ATTGTGAGGTTGTGTCGAAAGGAGGTACATGTT  238
             |||||||||||||||| | | | || ||||||||||||| ||| |||||||| | ||||
Sbjct  181  AACGTGTGTTCGAATTC-G-AGTGTCCATTGTGAGGTTGTATCGGAAGGAGGTGCCTGTT  238

Query  239  ATGATCCAATTAATCTCTATAATTCAGCTTCTGTCGCCATGAATCTTTATTACCAAAATC  298
            ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  239  ATGATCCGATTAATCTCTATAATTCAGCTTCTGTCGTCATGAATCTTTATTACCAAAATC  298

Query  299  AAGGAAGACACTATTCAAAATGCGATTTCGAAGGCTCTGGTATAATTACCGTAACTGATC  358
            |||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct  299  AAGGAAGACAGTATTCGAAATGCGATTTCGAAGGCTCTGGTATAATTAGCGTAACTGATC  358

Query  359  CTAGTGAGTTTTATGGATGTTGCATATATGAATTTTATAAGTAAAGCATAGAAAGCTTCG  418
            |||||   |   ||| |||||||||||||||||||  ||||||| |||||||||||||||
Sbjct  359  CTAGT---T---ATGAATGTTGCATATATGAATTTGCTAAGTAA-GCATAGAAAGCTTCG  411

Query  419  CCAATGTATTTGTTACAAAATTTGAATAATTAATGGTTCAA-TTT  462
            | ||||| | |||| |||| ||||||||||||||||||||| |||
Sbjct  412  CGAATGTGTCTGTTCCAAACTTTGAATAATTAATGGTTCAACTTT  456



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22017274062


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5