BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg483480

Length=461
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G43670.1 | Symbols:  | Carbohydrate-binding X8 domain superf...   675    0.0  


> AT2G43670.1 | Symbols:  | Carbohydrate-binding X8 domain superfamily 
protein | chr2:18105125-18106043 FORWARD LENGTH=555
Length=555

 Score =  675 bits (365),  Expect = 0.0
 Identities = 412/434 (95%), Gaps = 5/434 (1%)
 Strand=Plus/Plus

Query  1    TCAAACATGGCTAAAGCACAAATATGTCTTTGTTTCATCATCATCTTATACCTTTGGTCA  60
            |||||||||||||||||||||||||||||||||||||||||  |||||||||| ||| ||
Sbjct  15   TCAAACATGGCTAAAGCACAAATATGTCTTTGTTTCATCATTTTCTTATACCTCTGGCCA  74

Query  61   GAAGGAAATCTCATGAAAGT-AGCCAAGGCAGATCGCT---CCGGAGATTGGTGTGTTGC  116
            ||||||||| |||| ||||| | |||||||||||||||   ||||||||||||| |||||
Sbjct  75   GAAGGAAATTTCATCAAAGTCA-CCAAGGCAGATCGCTCGGCCGGAGATTGGTGCGTTGC  133

Query  117  TAAACCTTCTACGGCTAACGAAAGGCTTCAAGAAAACATAAACTTTGCGTGTTCGAAAAT  176
            |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  134  TAAACCTTCTACGGATAACGAAAGGCTTCAAGAAAACATAAACTTCGCGTGTTCGAAAAT  193

Query  177  TGATTGTCAGATTATATTGGAAGGAGGTGCATGTTATTTACCAGATAATCTCATTAGTCG  236
             |||||||||||||| | ||||||||||||||||||||||||||||| | ||||||||||
Sbjct  194  CGATTGTCAGATTATCTCGGAAGGAGGTGCATGTTATTTACCAGATAGTATCATTAGTCG  253

Query  237  TGCTTCTGTTGCCATGAATCTTTATTACCAAGCTCAAGGAAGACATTTTTGGAACTGCAA  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  254  TGCTTCTGTTGCCATGAATCTTTATTACCAAGCTCAAGGAAGACATTTTTGGAACTGCAA  313

Query  297  TTTTGAAGGCTCTGGTCTCATCGGCATAACTGATCCTAGCTATGGAAGTTGCATTTATCA  356
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  314  TTTTGAAGGCTCTGGTCTCATCGGCATAACTGATCCTAGCTATGGAAGTTGCATTTATCA  373

Query  357  ATTTCGTAAGTAAAACATATCAAGCTTCGATCTTGCTGCAAGAAGATAGAGGACTGTATC  416
            |||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||
Sbjct  374  ATTTCGTAAGTAAAACATATCAAGGTTCGATCTTGTTGCAAGAAGTTAGAGGACTGTATC  433

Query  417  TGAAATTTCCTATT  430
            ||||||||||||||
Sbjct  434  TGAAATTTCCTATT  447



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21967006313


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5