BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483486
Length=497
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43720.1 | Symbols: | Eukaryotic protein of unknown functio... 780 0.0
AT2G31725.1 | Symbols: | Eukaryotic protein of unknown functio... 124 6e-28
> AT2G43720.1 | Symbols: | Eukaryotic protein of unknown function
(DUF842) | chr2:18123267-18124338 FORWARD LENGTH=509
Length=509
Score = 780 bits (422), Expect = 0.0
Identities = 476/501 (95%), Gaps = 7/501 (1%)
Strand=Plus/Plus
Query 1 CTAATAAATCAACTCGCC-GGAAAAAATGGATCAAACGGCGGAGGAGAAGATGGTGAGAG 59
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTAATAAATCAACTCGCCGGGAAAAAATGGATCAAACGGCGGAGGAGAAGATGGTGAGAG 60
Query 60 AGAGAATTAGAAAGAAAGTTAACGAAGTCAGTTCTGCGTCGCAGTCTCTTCTTTCTCCAA 119
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGAGGATTAGAAAGAAAGTTAACGAAGTCAGTTCTGCGTCGCAGTCTCTTCTTTCTCCAG 120
Query 120 TACAAGACCACATCAATTTCACCCTTCAAAAGGCATACTTCAAATGTGCATATGAGTGCT 179
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 121 TACAAGACCACATCAATTTCACCCTTCAAAAGGCATATTTCAAATGTGCATACGAGTGCT 180
Query 180 TTGATAGGACAAGAACACACGCTGAGATTAGTCGATGTGCAGAGAGTTGCAGTGTTCCTA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTGATAGGACAAGAACACACGCTGAGATTAGTCGATGTGCAGAGAGTTGCAGTGTTCCTA 240
Query 240 TCACAAATTCGCAGAACCACTTTGATAATGAGATGTCTGTGTTCCAAGAGAGGTTGAATA 299
|||||||| | |||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 241 TCACAAATGCACAGAACTACTTTGATAATGAGATGTCGGTGTTCCAAGAGAGGTTGAATA 300
Query 300 GATCTCTTGTGGTTTGTCAAGACAAGTTTGAG-TCCGCTAAGCTTA-AGAAGACGAGAAA 357
|||||||||||||||||||||||||||||||| | ||||||| | ||||||||||||
Sbjct 301 GATCTCTTGTGGTTTGTCAAGACAAGTTTGAGGTT-GCTAAGCA-ACAGAAGACGAGAAG 358
Query 358 TGAAGCTGTAAATGATTTGGAGCATTGCGTAAACCAAACTGTTGATGAAGCTGTCAAGAC 417
|||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 359 TGAAGCGGTAAATGATTTGGAGCATTGTGTAAACCAAACTGTTGATGAAGCTGTGAAGAC 418
Query 418 TCTGCCTAATCTCGCCACAAGAATGAAGAAAGCTTTGTCAATCACAGACTGAGCTCTCCA 477
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TCTGCCTAATCTCGTCTCAAGAATGAAGAAAGCTTTGTCAATCACAGACTGAGCTCTCCA 478
Query 478 AAAACTT-TAAAGAGGGACTC 497
| | || |||||||||||||
Sbjct 479 ACGA-TTATAAAGAGGGACTC 498
> AT2G31725.1 | Symbols: | Eukaryotic protein of unknown function
(DUF842) | chr2:13486317-13487445 REVERSE LENGTH=634
Length=634
Score = 124 bits (67), Expect = 6e-28
Identities = 191/249 (77%), Gaps = 16/249 (6%)
Strand=Plus/Plus
Query 110 CTTTCTCCAATACAAGACCACATCAATTTCACCCTTCA-AAAGGCATACTTCAAATGTGC 168
|||||||| || ||||| |||||||||||||||||||| || || || |||||||||||
Sbjct 145 CTTTCTCCTATCCAAGATCACATCAATTTCACCCTTCAGCAA-GCTTATTTCAAATGTGC 203
Query 169 ATATGAGTGCTTTGATAGGACAAGAACA-CACGCTGAGATTAGTCGA-TGTG-CAGAG-A 224
|||||||||||||||||| | ||||| | || | ||||| ||| | || | | ||| |
Sbjct 204 ATATGAGTGCTTTGATAGAAGAAGAA-AGCAAGAGGAGATAAGTA-ACTGCGTC-GAGCA 260
Query 225 GTTGCAGTGTTCCTATCA-CAAATTCGCAGA-ACCACTTT-GATAATGAGATGTCTGTGT 281
| |||||||||| | ||||| | || | | | ||| || || || ||| || |
Sbjct 261 CT-GCAGTGTTCCCGTTGTCAAAT-CTCA-ACAGTA-TTTCGAGAACGAAATGGCTCAAT 316
Query 282 TCCAAGAGAGGTTGAATAGATCTCTTGTGGTTTGTCAAGACAAGTTTGAGTCCGCTAAGC 341
| || || || ||||| ||||| || ||||| |||||||||||||||||| || | ||||
Sbjct 317 TTCAGGAAAGATTGAACAGATCACTGGTGGTGTGTCAAGACAAGTTTGAGGCCTCAAAGC 376
Query 342 TTAAGAAGA 350
| ||||||
Sbjct 377 TCCAGAAGA 385
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23710517384
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5