BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483487
Length=1284
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43740.1 | Symbols: | Mannose-binding lectin superfamily pr... 1164 0.0
AT2G43730.1 | Symbols: | Mannose-binding lectin superfamily pr... 202 7e-51
> AT2G43740.1 | Symbols: | Mannose-binding lectin superfamily
protein | chr2:18126578-18128293 REVERSE LENGTH=1589
Length=1589
Score = 1164 bits (630), Expect = 0.0
Identities = 937/1075 (87%), Gaps = 62/1075 (6%)
Strand=Plus/Plus
Query 176 TCCGAGCTTAATTCTTTCGACTAATACATTCTAAATGAAATCCCGTGGTAGGGAGATGTT 235
||||||||||||||||||| || || |||||||||||||||||||||||||||||||||
Sbjct 376 TCCGAGCTTAATTCTTTCGTCTGCTATATTCTAAATGAAATCCCGTGGTAGGGAGATGTT 435
Query 236 CAAAGTCGGACCAATTGGGTCAAAACGTGATTATCATAAGAATTTGGAGTGGGACGAGAA 295
|||||||||||||||||||||| |||||| ||||| |||||||||||| ||||| |||||
Sbjct 436 CAAAGTCGGACCAATTGGGTCACAACGTGCTTATCTTAAGAATTTGGAATGGGAAGAGAA 495
Query 296 GGGACGCAACATGATCTCTAGTATATATGTTGCTTTCGACAGAGATGCCATAAACCAC-A 354
|||||||||||||||||||||||||||||| |||||||||| |||| ||||||| | |
Sbjct 496 GGGACGCAACATGATCTCTAGTATATATGTCGCTTTCGACAAAGATACCATAAA-TTCTA 554
Query 355 TTCAGTTTAGCTATCGTCAGAACGGAGGTCATGTCGTTTCTGAAAAGTATGGTGCGTCTG 414
|||||||||||||| |||||||||||||||||||||| ||| ||||||||||| |||||
Sbjct 555 TTCAGTTTAGCTATTGTCAGAACGGAGGTCATGTCGTGTCTAAAAAGTATGGTATGTCTG 614
Query 415 ATG-CCATTAAAA-GAAAGTATGGTACGTCCAAAGGTCAATCCCACGTAATGTTTGTTTT 472
||| ||| |||| |||||||||| ||| ||| |||| || ||||||||||||||||||
Sbjct 615 ATGCCCA--AAAACAAAAGTATGGTTCGTACAACGGTCGATTCCACGTAATGTTTGTTTT 672
Query 473 TG-TAATGGTTACTGATGACCACGTTAAAACAAATTTATGCAATATACAGGCGAGACTAA 531
|| | | ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 673 TGCT-CTTGTTACTGATGACCACGTTAAAACAAATTTATGCAATATACAGGTGAGACTAA 731
Query 532 ATGACGACGAGTTTGTGACCGGCTTGAGTGCAATAGA---TTGTATTGGGGTCACCACTT 588
||||||| |||||||||||||| |||||||||||| | ||||| ||| |||| | ||
Sbjct 732 ATGACGATGAGTTTGTGACCGGGTTGAGTGCAATATATCTTTGTAAAGGGATCACGAATT 791
Query 589 TGAATATTCACACTAATCAGGGGAAACACGGGCCAATTTGTGATATAT-TTCAATCAGT- 646
||||||||||||||||||||||||||||||| || |||||||||| || ||| |||| |
Sbjct 792 TGAATATTCACACTAATCAGGGGAAACACGGCCCGATTTGTGATAGATATTC-ATCA-TC 849
Query 647 TACG-A-A-TATGGATAAATATAAGAG-GGAAATTGATGTGAAGATACGTGATCGTCGTG 702
| | | | ||||||||| |||||| | ||||||||||||||||||||||||||||||||
Sbjct 850 AAAGAATATTATGGATAACTATAAG-GTGGAAATTGATGTGAAGATACGTGATCGTCGTG 908
Query 703 AGTTTGGTGGTTTCTTTGGGTCTTTTGATGACTATGGCAATCTGACTTCCATTGGCATTT 762
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 909 AGTTTGGTGGTTTCTTTGGGTCTTTTGATAACTATGGCACTCTGACTTCCATTGGCATTT 968
Query 763 ATGTGCGTCCCATTACAAGGATCAATGACGCCGCCCTCAGAACCAACTACAAAGTTACCG 822
||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 969 ATGTGTGTCCCATTACAAGGATCAATGACGTAGCCCTCAGAACCAACTACAAAGTCACCG 1028
Query 823 AAGTCACCGACGACGAAGATGACCAGAGCACTCTCTACCAATCATATGGTCCTTTAACTA 882
| | || ||||||| ||| |||||| |||| ||||||| |||||||||||| |
Sbjct 1029 ATG--ACT-ACGACGA------CCAAAGCACTTTCTATCAATCATCTGGTCCTTTAACCA 1079
Query 883 CAATCAACCATAATCGGACGCTTGAATATCAAATGCCTCATGAGGTCTCCGATGGTTATC 942
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
Sbjct 1080 CAATCAACCATAATCGGAAGCTTGAATATCAAATGCCTCATGAGGTCTCCGATG-TCA-- 1136
Query 943 ATGTCAATCCCATCGTTCAGAAGCCCAAGTTCGAAGACAAGATCAGTCTCTACCAATCAT 1002
| | | || || ||||| || ||||| |||||||||||||||||||||||||||||||
Sbjct 1137 A-G-C---CC-ATTGTTCATAACCCCAATTTCGAAGACAAGATCAGTCTCTACCAATCAT 1190
Query 1003 CTGATCGTCTAGCCAGAAGCACTAACAATCGGACACTTGAGTATGAAAGCCCGGAGTTCC 1062
| ||||||||||||||||||||||||| |||||||||||||||| | | |||||||||||
Sbjct 1191 CGGATCGTCTAGCCAGAAGCACTAACACTCGGACACTTGAGTATCAGATCCCGGAGTTCC 1250
Query 1063 TCGATGCTTTTCATCATGTCAAGCCCATTGGTCGTAAG-CCTAAACTCAAATATGGGATA 1121
|||||| | || || | || |||||||||||| || |||||||||||||| |||
Sbjct 1251 TCGATG-T---CA--AT--C---CC-ATTGGTCGTAAGTCC-AAACTCAAATATGGCATA 1297
Query 1122 TTCTCCAAGTTGAG-GCGCCTTTTCAGAAATCTCTTGAACTA-AT-TAGtttttttttGT 1178
|||||||||||| | ||| |||||||||||||||||| | || || | ||||||||| |
Sbjct 1298 TTCTCCAAGTTG-GCGCGTCTTTTCAGAAATCTCTTGGATTAGATCT--TTTTTTTTT-T 1353
Query 1179 GGTTTGCATTCGTGCAAGATCTCC-ATCGGTATGTTTTTGAATCCCAACCACTTA 1232
|||||||||||||||||||| | || ||||||| ||||| ||||| ||| |||
Sbjct 1354 CGTTTGCATTCGTGCAAGATC-CGGATTGGTATGTATTTGAGTCCCACCCA-TTA 1406
Score = 143 bits (77), Expect = 5e-33
Identities = 107/121 (88%), Gaps = 3/121 (2%)
Strand=Plus/Plus
Query 57 AATTTAGTAAATTTACTGTTTTCAACTTGAAATACATTTTAGTTTAAGAAAGATTTCTCA 116
||||||||||||||||||||||||| ||| |||||||| | ||||| ||| ||||| |
Sbjct 225 AATTTAGTAAATTTACTGTTTTCAAGTTGCTTTACATTTT-GATTAAGGAAGTTTTCTTA 283
Query 117 GAGAGATTATGTATGTAAAGCTTTTCTTCGTCTATATA-A-GTATGGATCGTCCTCACAA 174
||||||||| |||||||||||||||||||||||||||| | |||| ||||||||||| ||
Sbjct 284 GAGAGATTAGGTATGTAAAGCTTTTCTTCGTCTATATATAAGTATAGATCGTCCTCAGAA 343
Query 175 G 175
|
Sbjct 344 G 344
> AT2G43730.1 | Symbols: | Mannose-binding lectin superfamily
protein | chr2:18124648-18125868 REVERSE LENGTH=1047
Length=1047
Score = 202 bits (109), Expect = 7e-51
Identities = 292/373 (78%), Gaps = 42/373 (11%)
Strand=Plus/Plus
Query 64 TAAATTTACTGTTTTC-AACTTGAAATACATTTTAGTTTAAGAAAGATTTCTCAGAGAGA 122
|||||||||||||||| || || | |||||||| | ||||| ||| ||||| ||||| |
Sbjct 42 TAAATTTACTGTTTTCGAAGTT-ATTTACATTTT-GATTAAGGAAGTTTTCTTAGAGA-A 98
Query 123 TTATGTATGTAAAGCTTTTCTTCGTCTATATAAGTATGGATCGTCCTCACAAGTCCGAGC 182
|| ||||| |||||||||||||||||||||||||||||| || ||||||| | |
Sbjct 99 --AT-TATGT--AGCTTTTCTTCGTCTATATAAGTATGGATCCTCATCACAAGAAC-AAA 152
Query 183 TTAATTCTT-TC-------GA---CTAATA----C-A-TTCTA-----AATGAAATCCCG 220
|| ||| || || || ||||| | | | ||| ||||||||| ||
Sbjct 153 TT-ATT-TTATCAAGAAAAGAGTTTTAATATTTTCAACTGCTATTTTCAATGAAATCTCG 210
Query 221 TGGTAGGGAGATGTTCAAAGTCGGACCAATTGGGTCAAAACG-TGATTATCATAAGAATT 279
| |||||||||||||||||||||||||||||||||||| | | ||||| |||||| ||
Sbjct 211 TAATAGGGAGATGTTCAAAGTCGGACCAATTGGGTCAAAGCAAT-ATTATGATAAGAGTT 269
Query 280 TGGAGTGGGACGAGAAGGGACGCAACATGATCTCTAGTATATATGTTGCTTTCGACAGAG 339
||| | |||||||||||||||||||| ||||||||||||||||||||| ||| ||
Sbjct 270 GGGA-----A-GAGAAGGGACGCAACATGATATCTAGTATATATGTTGCTTTCAACAAAG 323
Query 340 ATGCCATAAACCACATTCAGTTTAGCTATCGTCAGAACGGAGGTCATGTCGTTTCTGAAA 399
|| ||||||| ||||||||||||||| ||| ||||||| ||||||||| |||||||
Sbjct 324 ATTCCATAAAATGTATTCAGTTTAGCTATTTTCATAACGGAGTTCATGTCGTGTCTGAAA 383
Query 400 AGTATGGTGCGTC 412
|| | ||| ||||
Sbjct 384 AGCACGGTTCGTC 396
Score = 191 bits (103), Expect = 2e-47
Identities = 211/259 (81%), Gaps = 23/259 (9%)
Strand=Plus/Plus
Query 524 GAGACTAAATGACGACGAGTTTGTGACCGGCTTGAGTGCAATAGATT-GTATTG--GGGT 580
|||||| |||||||| |||| |||||| || ||||||| |||| || | | | |||
Sbjct 421 GAGACTGAATGACGATGAGTATGTGACTGGGTTGAGTGGAATATTTTGGGAGAGAAAGGT 480
Query 581 CACCACTTTGA-ATATTCACACTAATCAGGGGAAACACGGGCCAATTTGTGAT---A-T- 634
||| |||||| || |||||||||||||||||||||||||||| ||||| || | |
Sbjct 481 CACGTCTTTGACAT-TTCACACTAATCAGGGGAAACACGGGCCGTTTTGTAATGGAACTG 539
Query 635 -AT-TTCAATC-AGTTACGAATATGGATA-AATATAAGAGGGAAATTGATGTGAAGATAC 690
|| ||| ||| |||| |||||| | | ||||||| ||||||||||||||||||||
Sbjct 540 GATATTC-ATCAAGTT----ATATGG-CAGATTATAAGAAGGAAATTGATGTGAAGATAC 593
Query 691 GTGATCGTCGTGAGTTTGGTGGTTTCTTTGGGTCTTTTGATGACTA-TG-G-CAATCTGA 747
|||||||||||||||||||||||||||||||||||||||||||| | | | | |||||
Sbjct 594 GTGATCGTCGTGAGTTTGGTGGTTTCTTTGGGTCTTTTGATGACGAATTTGACGGTCTGA 653
Query 748 CTTCCATTGGCATTTATGT 766
| |||||||||||||||||
Sbjct 654 CATCCATTGGCATTTATGT 672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63152285610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5