BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483491
Length=878
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43760.1 | Symbols: | molybdopterin biosynthesis MoaE famil... 1314 0.0
> AT2G43760.1 | Symbols: | molybdopterin biosynthesis MoaE family
protein | chr2:18132782-18134068 FORWARD LENGTH=1180
Length=1180
Score = 1314 bits (711), Expect = 0.0
Identities = 814/863 (94%), Gaps = 9/863 (1%)
Strand=Plus/Plus
Query 18 AAAGGTTAGAATTTGCTGTTGGATCATCTGCTAAGCTCGGTTTACTTTTCCTGGAACATC 77
||||||||||||||||| | ||||||||||||||||| |||||||| ||||| |||||||
Sbjct 297 AAAGGTTAGAATTTGCTATCGGATCATCTGCTAAGCTTGGTTTACTCTTCCTAGAACATC 356
Query 78 GATTGTATTGAGGTTCCTGTTGTATTGGATTAAAGATGTCTGCAGAGGAGAAAAACCTTA 137
|||||||| |||| | | | |||||||| ||||||||||||||||||||| |||||||
Sbjct 357 GATTGTATCGAGG-T--T-TACTATTGGATCAAAGATGTCTGCAGAGGAGAAGAACCTTA 412
Query 138 TAGAGATCTTGGAGGAAGGTCACACAGTCGATGTTGTTAAGTACATTGATTATGTCAGTG 197
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 413 TAGAGATCTTGGAGGAAGGTCACAAAGTCGATGTTGTTAAGTACATTGATTATGTCAGTG 472
Query 198 CCCCTCAAGCTGGTGCTATAGCGACATTCTCAGGCACTACAAGAGACATGTTCGAGGCCA 257
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 473 CCCCTCAAGCTGGTGCTATTGCGACATTCTCAGGCACTACAAGAGACATGTTCGAGGGCA 532
Query 258 AGACTGTGTTGGAGCTAAGGTATGAAGCATATGTGCCAATGGCCACACGATGCCTCATCT 317
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 533 AGACAGTGTTGGAGTTAAGGTATGAAGCATATGTGCCAATGGCCACACGATGCCTCAGCT 592
Query 318 CGATCTGTACAACTGCTAGATCAACTTGGGATATCCACAAGATTGCGGTTGCTCACCGTC 377
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 593 CGATCTGTACAACTGCTAGATCAACTTGGGATATCCACAAGATTGCTGTTGCTCACCGTC 652
Query 378 TGGGACCAGTTCCTGTTGGAGAAACTAGCGTGTTCATTGCGGTCTCATCTGTTCACCGTG 437
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 653 TTGGACCAGTTCCTGTTGGAGAAACTAGCGTGCTCATTGCGGTCTCATCTGTTCACCGTG 712
Query 438 CTGATGGTTTAGATGCTTGCAAGTTCTTGATTGACGAGTTGAAGGCATCGGTTCCGATAT 497
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 713 CAGATGGTTTAGATGCTTGCAAGTTCTTGATCGACGAGTTGAAGGCATCGGTTCCGATAT 772
Query 498 GGAAGAAAGAGGTTTACACTAATGGAGAGATTTGGAAGGAGAACTCTGAGTTTATGGAGA 557
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 773 GGAAGAAAGAGGTTTACACTAATGGAGAGATTTGGAAGGAGAATTCTGAGTTTATGGAGA 832
Query 558 AAAGATTGGAGCTTGCAGAGAAAAGAGACAGCATTGTaaaaaaaCCTGTGGTTGAAGAAC 617
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 833 AAAGATTGGAGCTTGCAGAGAAAAGAGACAGCATTGTAAAAAAAACTGTGGTTGAAGAAC 892
Query 618 ATAGAAGAAGAGGTTGCTGTGGAAGCAAAGTTAGAGTAGAAGAAGATGAAGAGCATAAAG 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 ATAGAAGAAGAGGTTGCTGTGGAAGCAAAGTTAGAGTAGAAGAAGATGAAGAGCATAAAG 952
Query 678 ATATTACAGGAGATAACAAATCTTCTTCTTGATTACTTGTAGCAA-AGAGCAATGTTTCG 736
||||||||||||||||||||||||||||||||| |||||||||| | | || |||||||
Sbjct 953 ATATTACAGGAGATAACAAATCTTCTTCTTGATCACTTGTAGCAGTA-A-CACTGTTTCG 1010
Query 737 TTTTTTACTCTCAGTAAACAAAATGTCTTAAGCACATTGTTGAATCTAAAGACTTCATAT 796
|||||||| ||| || ||||| | |||||||||||||||||||||||||||||| ||||
Sbjct 1011 CTTTTTACTTTCAATAGACAAACTTTCTTAAGCACATTGTTGAATCTAAAGACTT-ATAT 1069
Query 797 GCGTTAGTTGGTGCCAG-ACTGGGCATATACTTGCTACTGCTTGGATCTGTAAGAATGAA 855
|||||||||||| | | ||||||| |||||||||||||||||| |||||||||||| |
Sbjct 1070 GCGTTAGTTGGTTACTGGACTGGGCTTATACTTGCTACTGCTTGAATCTGTAAGAATCTA 1129
Query 856 AACGAAGATACTGCAAGATTGTA 878
| |||||||||||||||||||||
Sbjct 1130 ATCGAAGATACTGCAAGATTGTA 1152
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42849727391
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5