BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483494
Length=1329
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43770.1 | Symbols: | Transducin/WD40 repeat-like superfami... 2278 0.0
> AT2G43770.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr2:18134061-18136001 REVERSE LENGTH=1388
Length=1388
Score = 2278 bits (1233), Expect = 0.0
Identities = 1298/1330 (98%), Gaps = 2/1330 (0%)
Strand=Plus/Plus
Query 1 AAtctctctcttcctctttctcgcgagctttttctctctGGGTTTAGGGTTCCGGTAATT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AATCTCTCTCTTCCTCTTTCTCGCGAGCTTTTTCTCTCTGGGTTTAGGGTTCCGGTAATT 60
Query 61 TTTCGACGACACCGAGCGATTCGTGCCTCTCTCGCCTTCCTTTGACTTCGGTTCTAACTT 120
|| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 61 TTGCGACGACACCGAGCGATTCGTGCCTCCCTCCCCTTCCTTTGACTTCGGTTCTAACTT 120
Query 121 GATTAACAGTGAAAAGGAGGCTAAGATGGAAATCATGCCAAGAGAGAATGAGACTGCTTT 180
||||| |||||| ||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 121 GATTACCAGTGAGAAGTAGGCTAAGATGGAAATCATGTCAAGAGAGAATGAGACTGCTTT 180
Query 181 GTCAGGTCCTAGGCCGATGGAATGGTCTACTGTCCCACACAGTGCTCCTCAAGGACCTGG 240
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 181 GTCAGGTCCTAGGCCGATGGAATGGTCTACCGTCCCACACAGTGCTTCTCAAGGACCTGG 240
Query 241 TCCCAATGGCAAGAACCGGACATCGAGCTTGGAAGCACCTATCATGTTGCTAAGTGGACA 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCCCAATGGCAAGAACCGGACCTCGAGCTTGGAAGCACCTATCATGTTGCTAAGTGGACA 300
Query 301 TCCGAGTGCTGTATATACCATGAAGTTCAATCCTGCTGGAACTCTGATTGCATCTGGATC 360
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCCGAGTGCTGTCTATACCATGAAGTTCAATCCTGCTGGAACTCTGATTGCATCTGGATC 360
Query 361 CCATGACAGAGAAATCTTCCTCTGGAGAGTTCACGGCGACTGCAAAAACTTCATGGTTTT 420
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 361 CCATGACAGAGAAATCTTCCTCTGGAGAGTTCACGGGGACTGCAAAAACTTCATGGTTTT 420
Query 421 GAAAGGTCACAAGAACGCCATCCTTGATCTTCATTGGACCAGTGATGGCTCCCAGATTGT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAAAGGTCACAAGAACGCCATCCTTGATCTTCATTGGACCAGTGATGGCTCCCAGATTGT 480
Query 481 ATCAGCTAGTCCGGATAAAACTGTTAGGGCTTGGGATGTCGAAACTGGGAAACAAATCAA 540
|||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||
Sbjct 481 ATCAGCTAGTCCGGATAAAACTGTAAGGGCTTGGGATGTTGAGACTGGGAAACAAATCAA 540
Query 541 GAAGATGGCTGAACATTCATCGTTTGTGAATTCTTGCTGTCCTACACGTAGAGGACCACC 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 541 GAAGATGGCTGAACATTCATCGTTTGTGAATTCTTGCTGTCCTACACGTAGAGGGCCACC 600
Query 601 TCTTATCATCAGTGGATCTGATGATGGAACTGCCAAGCTTTGGGACATGCGTCAAAGAGG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCTTATCATCAGTGGATCTGATGATGGAACTGCCAAGCTTTGGGACATGCGTCAAAGAGG 660
Query 661 AGCCATACAAACATTTCCTGATAAATACCAAATCACTGCCGTCAGTTTCTCAGATGCAGC 720
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 661 AGCCATACAAACATTTCCTGATAAATACCAAATCACTGCAGTCAGTTTCTCAGATGCAGC 720
Query 721 TGATAAGATTTTCACTGGTGGTGTAGACAATGATGTTAAGGTTTGGGACTTGCGAAAAGG 780
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 721 TGATAAGATTTTCACTGGTGGTGTAGACAATGATGTTAAGGTTTGGGACTTGAGAAAAGG 780
Query 781 TGAAGCCACCATGACACTTGAGGGCCATCAAGATACAATCACAGGTATGAGCTTAAGCCC 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TGAAGCCACCATGACACTTGAGGGCCATCAAGATACAATCACAGGTATGAGCTTAAGCCC 840
Query 841 AGACGGTTCCTACCTTCTCACTAATGGAATGGACAACAAGCTCTGTGTGTGGGACATGCG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AGACGGTTCCTACCTTCTCACTAATGGAATGGACAACAAGCTCTGTGTGTGGGACATGCG 900
Query 901 TCCTTACGCTCCACAAAACCGATGTGTAAAGATCTTTGACGGGCATCAACACAACTTTGA 960
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 901 TCCTTATGCTCCACAAAACCGATGTGTAAAGATCTTTGAGGGGCATCAACACAACTTTGA 960
Query 961 GAAGAACCTGCTGAAATGTTCATGGTCACCTGATGGTACAAAAGTCACTGCTGGTAGCTC 1020
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 961 GAAGAACCTGCTGAAATGTTCATGGTCACCTGATGGTACAAAAGTTACTGCCGGTAGCTC 1020
Query 1021 AGACCGTATGGTTCATATCTGGGACACAACCAGTCGGCGCATTATGTATAAGCTCCCAGG 1080
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1021 AGACCGTATGGTTCATATCTGGGACACAACCAGTCGGCGCACTATATATAAGCTCCCAGG 1080
Query 1081 CCATACCGGTTCTGTCAATGAGTGTGTTTTCCACCCAACCGAGCCTATCATTGGATCTTG 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CCATACCGGTTCTGTCAATGAGTGTGTTTTCCACCCAACCGAGCCTATCATTGGATCTTG 1140
Query 1141 CAGTAGTGATAAAAATATCTACTTGGGAGAGATCTGAATTTTAAAGCTGTGAAACCTTTG 1200
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1141 CAGTAGTGATAAAAATATCTACTTGGGAGAGATCTGAATTTCAAAGCTGTGAAACCTTTG 1200
Query 1201 CAAGTCTTAAGTGGAATTGAAGTCTTTAGATTCGACAATGTGCTT-GAGACATTTTGTTT 1259
||| ||| |||||||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 1201 CAACTCT-AAGTGGAATTGAAGTCTTTAGAATCGACGATGTGCTTTGAGACATTTTGTTT 1259
Query 1260 ATTGAAAGAAAAAACGAAACATTGCTCTATGCTACAAGTAATCAAGATTTGTTATCTCCT 1319
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1260 ATTGAAAGAAAAAACGAAACATTGCTCTTTGGTACAAGTAATCAAGATTTGTTATCTCCT 1319
Query 1320 GTAATATCTT 1329
||||||||||
Sbjct 1320 GTAATATCTT 1329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65411310135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5