BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483497
Length=2832
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43800.1 | Symbols: | Actin-binding FH2 (formin homology 2)... 4231 0.0
> AT2G43800.1 | Symbols: | Actin-binding FH2 (formin homology
2) family protein | chr2:18145721-18148897 FORWARD LENGTH=2861
Length=2861
Score = 4231 bits (2291), Expect = 0.0
Identities = 2673/2852 (94%), Gaps = 48/2852 (2%)
Strand=Plus/Plus
Query 24 CTTCTGCTTACTCTTTGTAGCTTTCTTCTTCTCTTCCTCCGCCGCCGATCAACGTTTCCA 83
||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 15 CTTCTGCTTCCTCTTTGTAGCTTTCTTCTTCTCTTCCTCCACCGCCGATCAACGTCACCA 74
Query 84 CTCTCGTCACTTACTTCACCAACCCTTTTTCCCGGTCGTAACCGCCGCTCCACCACCGTA 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 CTCTCGTCACTTACTTCACCAACCCTTTTTCCCGGTCGTAACCGCCGCTCCACCACCGTA 134
Query 144 TCAACCACCGGTCTCTTCCCAACCTCCATCTCCTTCCccacacacacatcaccaccacaa 203
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 135 TCAACCACCCGTCTCTTCCCAACCTCCATCTCCTTCCCCACACACACATCACCACCACAA 194
Query 204 gaaacaactagcgacg-ccaccaccaccaccgcacgagaaacaccTATTCTCCTCCGTCG 262
|||||| ||| ||||| | | | |||||||| ||||||||||| || ||||||||||| |
Sbjct 195 GAAACACCTAACGACGACGA-CGCCACCACCTCACGAGAAACATCTTTTCTCCTCCGTAG 253
Query 263 CAAATCCTCCACCTCCTCCGCCGTCTCCGCCGCGTCCAAACCCTTTTTtcccctcgtcag 322
||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||
Sbjct 254 CAAATCCTCCACCTCCTCCGCCGTCTCCGCCGCATCCAAACCCTTTTTTCCCTTCATCAG 313
Query 323 acccaacctccaccgcctctcaccctcctccagcaccacctcctcctgcctcgctccCGA 382
||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 314 ACCCAACTTCCACCGCCTCTCACCCTCCTCCAGCACCACCTCCTCCGGCCTCACTCCCAA 373
Query 383 CTTTTCCCGCCAACATCTCTTCCCTCCTCTTTCCAACTCACAACAAACCATCCAAGCCTC 442
||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||
Sbjct 374 CTTTTCCCGCCAACATCTCTTCCCTTCTCTTTCCGACTCACAACAAACAATCCAAGCCTC 433
Query 443 CCAGCAACGGCCACCTCGCTAGGCTCGTCACCATAACCGCCTCGGCCATCTGCGCCGCTG 502
|||||||||||||| |||||||||||||||||||||||||||| | ||||| ||||||||
Sbjct 434 CCAGCAACGGCCACATCGCTAGGCTCGTCACCATAACCGCCTCCGTCATCTCCGCCGCTG 493
Query 503 CTCTCCTCTCTCTATTCGCCGTCTTCATCATCTTCATACGCCGAACCCGCCATCGCCGCC 562
||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||
Sbjct 494 CTCTCCTCTCTCTATTCGCCGTCTTCATCATCTTCATCCGCCGAACTCGCCACCGCCGCC 553
Query 563 GCTCCTCCCCTGCAGACGACACCAAAGCCACGAGATCAGATGCTCTTCAGCTCTTCAACG 622
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 554 GCTCCTCCCCTGCAGACGACACCAAATCCACGAGATCAGACGCTCTTCAGCTCTTCAACG 613
Query 623 CATCTCCTTCCGACGGCACTAAGAAACACAAACAACATCAACAACCACCGAAGTACACTT 682
| ||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||
Sbjct 614 CCTCTCCTTCCGACGGCTCTAAGAAACAGAAACAACATCAACAACCACCAAAGTACACTT 673
Query 683 CCTCACACACTTCCTCTGAGTTTCTCTACTTGGGTACTTTAGTAAACTC-CAGAAGCGGT 741
||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||| |
Sbjct 674 CCTCACACACTTCCTCTGAGTTTCTCTACTTAGGTACTTTAGTAAACTCTC-GAAGCAAT 732
Query 742 GGTTTAGAACAGCAAAAATCTCCAATCTCCCTCTCCGGCGGTATCACCGGCGTATTGGAA 801
|||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 733 GGTTTAGAGCAGCAAAAGTCTCCAATCTCCCTCTCTGGCGGTATCACCGGCGTATTGGAA 792
Query 802 TTACCTCCTCCAGCTTCGTCGTCTTCTTCCTCTTCTTACTCACAGTACCATAAGCTAGGC 861
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 793 TTACCTCCTCCAGCTTCGTCGTCTTCTTCTTCTTCTTACTCACAGTACCATAAGCTAGGC 852
Query 862 TCGCCGGAGCTTCGTCCTCTTCCCCCTTTACCAAAGCTCCAATCTTTCACTCCCGTCTAC 921
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 853 TCGCCAGAGCTTCGTCCTCTTCCCCCTTTACCAAAGCTCCAATCTTTCACTCCCGTTTAC 912
Query 922 AAAAGCACTGAACAGTTAAACCCTAAAAGACAATACTTTGACGGAGACGATAACGAAAAC 981
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 913 AAAAGCACTGAACAGTTAAACCCTAAAAGACAAGACTTTGACGGAGACGATAACGAAAAC 972
Query 982 GATGAGTTTTTCTCTCCGAGAGGATCTTCAGGGCGT--A-A-A---C-A-----G----- 1023
|||||||||||||||||||||||||||||||||||| | | | | | |
Sbjct 973 GATGAGTTTTTCTCTCCGAGAGGATCTTCAGGGCGTAAACAGAGCCCGACCCGTGTCTCT 1032
Query 1024 GATGTTGATCAGATTGGTGACAGGAGTATCAACGGCTCAGGCTCGAACTCGTGTTCGCCG 1083
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 GATGTTGATCAGATTGACAACAGGAGTATCAACGGCTCAGGCTCGAACTCGTGTTCGCCG 1092
Query 1084 ACTAATTCAGTGCCGTCGTTGAATGCTTCTCCGGGAACAAGTTTGAAACCTAAGTCGACT 1143
||||||| | ||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1093 ACTAATTTTGCGCCGTCGTTGAATGCTTCTCCGGGAACAAGTTTGAAACCTAAGTCAATT 1152
Query 1144 AGTCCTCCTCTCTCGCTGCACAGTCAGA-ACAGCTCAAACAACGGCGTTCCGAAGCGGCT 1202
||||||||| |||||||||||||||||| | ||||||||||||||| |||||||||||||
Sbjct 1153 AGTCCTCCTGTCTCGCTGCACAGTCAGATA-AGCTCAAACAACGGCATTCCGAAGCGGCT 1211
Query 1203 TTGTCCAGCGAGGCCACCTCCACCACCTCCTCCGCCGCCGCAATTCTTGGAGATTCCGGC 1262
||||||||||||||||||||||||||||||||||||||| || ||| |||| |||||||
Sbjct 1212 TTGTCCAGCGAGGCCACCTCCACCACCTCCTCCGCCGCCACAGGTCTCGGAGGTTCCGGC 1271
Query 1263 TACTATGTCGCACTCGCC-TCCTGGTGGGGATTCTGACCCAGAGAAGAAAGTGGAGAGCA 1321
|||||||||||| || || |||||||| |||||||||||||||||||||||||||| ||
Sbjct 1272 TACTATGTCGCATTC-CCTTCCTGGTGATGATTCTGACCCAGAGAAGAAAGTGGAGACCA 1330
Query 1322 TGAAACCAAAGTTGAAGACTTTACATTGGGATAAAGTTAGAGCAAGCTCGAGCCGTGCTA 1381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1331 TGAAACCAAAGTTGAAGACTTTACATTGGGATAAAGTTAGAGCAAGCTCGAGCCGTGTTA 1390
Query 1382 TGGTGTGGGACCAAATCAAATCAAACTCCTTTCAAGTGAATGAAGAAATGATAGAGACCT 1441
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1391 TGGTGTGGGACCAAATCAAATCAAACTCCTTTCAAGTGAATGAAGAAATGATAGAGACAT 1450
Query 1442 TGTTCAAGGCGAATGATACAAATTCAAGAACAAGAGATGGCCTTGTTCAATCCGCCAATC 1501
||||||||| ||||||| ||| ||| ||||||||||||||| |||||||||||| | ||
Sbjct 1451 TGTTCAAGGTGAATGATCCAACTTCGAGAACAAGAGATGGCGTTGTTCAATCCGTGAGTC 1510
Query 1502 AGGAGAATCGGTTTCTTGACCCAAGAAAGTCACACAACATTGCCATTTTGCTGAGAGCTC 1561
||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||
Sbjct 1511 AGGAGAATCGGTTTCTTGATCCAAGAAAGTCACACAACATTGCTATTTTGTTGAGAGCTC 1570
Query 1562 TTAATGTAACTGCTGATGAAGTATGTGAAGCTCTTGTAGAAGGCAACTCGGATACGCTTG 1621
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1571 TTAATGTAACTGCTGATGAAGTATGTGAAGCTCTTATAGAAGGTAACTCGGATACGCTTG 1630
Query 1622 GACCCGAGCTTCTCGAATGCTTGCTTAAGATGGCTCCTACCAAAGAAGAAGAGGACAAGC 1681
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1631 GACCCGAGCTTCTCGAATGCTTGCTTAAGATGGCTCCTACTAAAGAAGAAGAGGACAAGC 1690
Query 1682 TTAAGGAGCTTCAAGACAATGATGATGGATCTCCTTCCAAGATAGGACCTGCAGAGAAAT 1741
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1691 TTAAGGAGCTTAAAGATGATGATGATGGATCTCCTTCCAAGATAGGACCTGCAGAGAAAT 1750
Query 1742 TCCTCAAAGCATTGTTGAACATTCCTCTCGCCTTCAAGAGGATTGATGCAATGCTTTACA 1801
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1751 TCCTCAAAGCATTGTTGAACATTCCTTTCGCCTTCAAGAGGATTGATGCAATGCTTTACA 1810
Query 1802 TAGTCAAGTTCGAATCAGAAACCGAGTACCTTAACAAATCCTTCGACACCCTGGAGGCTG 1861
| ||||||||||||||||||| |||||||||||||| |||||||||||| || |||||||
Sbjct 1811 TTGTCAAGTTCGAATCAGAAATCGAGTACCTTAACAGATCCTTCGACACTCTCGAGGCTG 1870
Query 1862 CTTCTGGTGAGTTAAAGAACACGCGGATGTTCTTGAAGCTTTTAGAAGCAGTACTCAAGA 1921
|| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1871 CTACTGGTGAGTTAAAGAACACGCGGATGTTCTTGAAGCTTTTAGAAGCCGTGCTCAAGA 1930
Query 1922 CCGGGAACCGGATGAATATAGGAACCAATAGAGGTGATGCACATGCGTTCAAGCTCGACA 1981
| |||||||||||||||||||||||||||||||| || |||||||| |||||||||||||
Sbjct 1931 CTGGGAACCGGATGAATATAGGAACCAATAGAGGGGACGCACATGCTTTCAAGCTCGACA 1990
Query 1982 CACTCTTAAAACTGGTAGATATCAAAGGCGCGGATGGGAAAACCACCTTATTGCATTTTG 2041
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1991 CGCTCTTAAAACTGGTAGATATCAAAGGCGCGGATGGGAAAACCACCTTATTGCATTTTG 2050
Query 2042 TGGTTCAAGAGATCATAAAATTTGAAGGTGCTCGGGTTCCTTTTACTCCGACTCAAAGCC 2101
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 2051 TGGTTCAAGAGATCATAAAATTTGAAGGAGCTCGGGTTCCTTTTACTCCGAGTCAAAGCC 2110
Query 2102 ATATAGGCAATGACATGGCCGAGCAATCGGCATTCCAAGACGACCTAGAGCTCAAGAAAC 2161
|||||||| || |||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 2111 ATATAGGCGATAACATGGCCGAGCAATCCGCATTCCAAGATGACCTAGAGCTCAAGAAAC 2170
Query 2162 TGGGGTTGCAAGTAGTTTCAGGTCTCAGCTCTCAGTTGATTAACGTTAAGAAAGCAGCTG 2221
| ||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||| |
Sbjct 2171 TCGGGTTGCAAGTCGTTTCAGGTCTCAGCTCTCAGCTGATTAACGTCAAGAAAGCAGCGG 2230
Query 2222 CAATGGATTCAAATTCCCTCATCAACGAAACAGCGGAAA-CAGCCAGCGGAATAGCGAAA 2280
||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||
Sbjct 2231 CAATGGATTCAAATTCCCTCATCAACGAAACAGCGGAAATC-GCCAGAGGAATAGCGAAA 2289
Query 2281 GTCAAGGAAGTAATTGCGGAGCTAAAGCAAGAAACAGGTGTAGAGAGATTCTTGGAGTCA 2340
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2290 GTCAAGGAAGTAATCACGGAGCTAAAGCAAGAAACAGGTGTAGAGAGATTCTTGGAGTCA 2349
Query 2341 ATGAACTTGTTCTTGAACAAAGCTGAGAAAGAGATCACAGAGATACAATCTCATGGAGAC 2400
||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 2350 ATGAACTCGTTCTTGAACAAAGGTGAGAAAGAGATCACAGAGTTACAATCTCATGGAGAC 2409
Query 2401 AATGTGATGAAGATGGTTAAAGAAGTAACAGAGTATTTCCACGGGAACTCGGAAACTCAT 2460
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2410 AATGTCATGAAGATGGTTAAAGAAGTAACAGAGTATTTCCACGGGAACTCGGAAACTCAT 2469
Query 2461 CATTTTCGCATTTTCGCTGTGGTCAGAGACTTTCTGACGATTCTTGATCAAGTGTGTAAA 2520
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2470 CCTTTTCGCATTTTCGCTGTGGTCAGAGACTTTCTGACGATTCTTGATCAAGTGTGTAAA 2529
Query 2521 GAAGTTGGACGCGTTAATGAGAGAACGGTGTACGGATCCGTGCCACGACATTCGCCATCG 2580
|||||||||||||| || |||||||||||||| |||||| |||||| |||||||||||||
Sbjct 2530 GAAGTTGGACGCGTAAACGAGAGAACGGTGTATGGATCCATGCCACTACATTCGCCATCG 2589
Query 2581 AACCAGACCGCCACGCCTCTGTTTCCTGTGGTTAACAATAACAACTCACGTCTGAGTCCA 2640
|||||||||||||||||||||||||| ||||||| ||||||||||||||| || ||||||
Sbjct 2590 AACCAGACCGCCACGCCTCTGTTTCCGGTGGTTATCAATAACAACTCACGGCTAAGTCCA 2649
Query 2641 TCGGGTTCTCTAGACGAGGACGATGACTCGTTTTAAGTGAAAACTGTTGGCTCGAGTTTG 2700
||||||||||||||||| ||||||| |||||| ||||||||||||||||||||| |||||
Sbjct 2650 TCGGGTTCTCTAGACGACGACGATGGCTCGTTCTAAGTGAAAACTGTTGGCTCGGGTTTG 2709
Query 2701 GTTCGGTGTATGCTAATGTTTTGGTTTCATTTGCTACGTACTCAAG-A-TAT-T-T---A 2753
|||||||||||||||||||||||||||||||||||||||||||||| | ||| | | |
Sbjct 2710 GTTCGGTGTATGCTAATGTTTTGGTTTCATTTGCTACGTACTCAAGTAATATATGTGTTA 2769
Query 2754 TA--T-TTT-TATT------GATAGGCGAATTTAAATAGATTTTGGCTGATTGTTGCAAG 2803
|| | ||| |||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 2770 TACATATTTATATTTTTATTGATAGGCGAATTTAAATAGATTTTGGCAGATTGTTGCAAG 2829
Query 2804 TTGCTATC---GGGCTCTGTACGTGTTCCAGT 2832
|||||||| |||||||||||||||||||||
Sbjct 2830 TTGCTATCATCGGGCTCTGTACGTGTTCCAGT 2861
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 140718275115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5