BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483504
Length=1155
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43870.1 | Symbols: | Pectin lyase-like superfamily protein... 1829 0.0
> AT2G43870.1 | Symbols: | Pectin lyase-like superfamily protein
| chr2:18166615-18168264 REVERSE LENGTH=1155
Length=1155
Score = 1829 bits (990), Expect = 0.0
Identities = 1100/1155 (95%), Gaps = 0/1155 (0%)
Strand=Plus/Plus
Query 1 ATGGcttcacttcttgtcctctccgtcttcttcttcttctcctcttgttctgctcagtcc 60
|||||||||||||||||||||| ||| ||||||||| |||| |||||||||||||| |||
Sbjct 1 ATGGCTTCACTTCTTGTCCTCTTCGTTTTCTTCTTCATCTCTTCTTGTTCTGCTCAATCC 60
Query 61 tacaatgtcttgtctTTCGGAGCTAAGCCGGACGGAAAGACAGACGCAACCAAAGCGTTC 120
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 TACAATGTATTGTCTTTTGGAGCTAAGCCGGACGGAAAGACAGACGCAACCAAAGCTTTT 120
Query 121 ATGGCGGTTTGGGAAACCGCGTGTGCATCATCTCGTCCCGTAACCATCGTAGTTCCCAAA 180
|||||||||||| ||||||| |||||||| |||||||| || ||||| || |||||||||
Sbjct 121 ATGGCGGTTTGGCAAACCGCTTGTGCATCGTCTCGTCCTGTTACCATTGTGGTTCCCAAA 180
Query 181 GGCCGGTTCTTGTTAAGGAGCGTTACTTTCGATGGTTCCAAGTGCAAGCCCAAGCCCGTT 240
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 GGCCGGTTCTTGTTAAGAAGCGTTACTTTCGATGGTTCCAAATGCAAGCCCAAGCCCGTT 240
Query 241 ACGTTCCGTATCGACGGTACATTGTTGGCTCCGGCGGATTATCGAGTTATCGGAAATGAA 300
|||||||||||||||||||||||| ||||||| || |||||||||||||| |||||||||
Sbjct 241 ACGTTCCGTATCGACGGTACATTGGTGGCTCCAGCTGATTATCGAGTTATAGGAAATGAA 300
Query 301 GACTATTGGATTTTCTTCCAACATCTAGACGGCATCACCGTCTACGGCGGAGTTCTTGAC 360
|||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||
Sbjct 301 GACTATTGGATTTTCTTCCAGCATCTCGACGGCATCACCGTATACGGCGGAGTTCTTGAC 360
Query 361 GCTCGAGGTGCTTCTTTATGGGATTGTAAGAAGTCCGGCAAGAATTGCCCCAGCGGCGCA 420
|||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 361 GCTCGAGGAGCTTCTTTATGGGATTGTAAAAAGTCCGGCAAGAATTGCCCCAGTGGCGCA 420
Query 421 ACGACTATAGGATTTCAGAGCTCAAGCAACGTTGTGGTCTCTGGGCTAACGTCATTAAAC 480
||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 421 ACGACAATAGGATTTCAGAGCTCAAGCAACGTCGTGGTCTCTGGGCTAACGTCACTAAAC 480
Query 481 AGCCAGATGTTCCACGTCGTCATCAACGGTTGTAATAACGTAAAGCTTCAAGGAGTCAAA 540
||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 481 AGCCAAATGTTCCACGTCGTCATCAACGGTTGTAACAACGTAAAGCTTCAGGGAGTCAAA 540
Query 541 GTATTAGCTGCCGGAAACAGCCCCAACACCGATGGTATCCACGTTCAGTCTTCCTCCACC 600
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 541 GTATTAGCTGCCGGAAACAGCCCCAACACCGACGGTATCCACGTTCAGTCTTCCTCCTCC 600
Query 601 GTCTCTATCTTCAATACTAAAATCTCCACAGGAGACGATTGCGTCTCCATCGGTCCCGGC 660
|||||||| |||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 601 GTCTCTATATTCAATACTAAAATCTCCACCGGAGACGATTGTGTCTCCATTGGTCCCGGC 660
Query 661 ACTAACGGACTATGGATCGAAAATGTAGCATGCGGCCCTGGTCATGGCATCAGCATTGGT 720
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 661 ACTAACGGACTATGGATCGAAAATGTCGCATGCGGCCCTGGTCATGGCATCAGCATTGGT 720
Query 721 AGTTTGGGAAAAGATAGCGTGGAGTCAGGTGTACAAAACGTGACTGTCAAAACGGTGACG 780
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 721 AGTTTGGGAAAAGATAGCGTGGAGTCAGGTGTACAAAACGTGACAGTGAAAACGGTGACG 780
Query 781 TTTACGGGAACTGATAACGGAGTGAGGATCAAATCATGGGCCAGGCCCAGTAGTGGATTC 840
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 781 TTTACGGGAACTGATAACGGAGTAAGGATCAAATCATGGGCCAGGCCCAGTAGTGGGTTC 840
Query 841 GCTAAGAACATCCGTTTCCAACATTGTGTAATGAACAACGTAGAGAACCCTATCATCATT 900
||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 841 GCTAAAAACATCCGTTTCCAACATTGTGTAATGAACAATGTCGAGAACCCTATCATCATT 900
Query 901 GACCAAAACTACTGTCCTGATCACGATTGTCCTCGTCAGATTTCGGGGATCAAAATTAGC 960
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 901 GACCAAAACTACTGTCCTGATCACGATTGTCCTCGCCAGGTTTCGGGGATCAAAATTAGC 960
Query 961 GATGTGCTGTTTGTTGATATACATGGAACATCGGCGACTGAAGTTGGAGTGAAACTTGAT 1020
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 961 GATGTGTTGTTTGTTGATATACATGGAACATCGGCAACTGAAGTTGGAGTGAAACTTGAT 1020
Query 1021 TGTAGTTCTAAGAAACCGTGTACCGGAATTAGACTTGAGGATGTGAAATTAACGTACCGG 1080
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1021 TGTAGTTCTAAGAAACCATGTACCGGAATTAGACTTGAGGATGTGAAATTAACGTACCAG 1080
Query 1081 AATAAACCGGCTGCGTCGGCTTGTACTCACGCCGGAGGGATAGAAGCTGGATTTTTTCAG 1140
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 AATAAACCGGCTGCATCGGCTTGTACTCACGCCGGAGGGATAGAAGCTGGATTTTTTCAG 1140
Query 1141 CCAAATTGTCTATGA 1155
|||||||||||||||
Sbjct 1141 CCAAATTGTCTATGA 1155
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56676415305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5