BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483509
Length=871
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43910.2 | Symbols: ATHOL1, HOL1 | HARMLESS TO OZONE LAYER 1... 1192 0.0
AT2G43920.1 | Symbols: HOL2, ATHOL2 | S-adenosyl-L-methionine-d... 830 0.0
> AT2G43910.2 | Symbols: ATHOL1, HOL1 | HARMLESS TO OZONE LAYER
1 | chr2:18184491-18187028 REVERSE LENGTH=923
Length=923
Score = 1192 bits (645), Expect = 0.0
Identities = 771/828 (93%), Gaps = 24/828 (3%)
Strand=Plus/Plus
Query 49 ATGGCTGAAGAACAAGAAAACTCAGGTCAGAGCAATGGTGGAAACGTTATTCCAACTCCT 108
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 78 ATGGCTGAAGAACAACAAAACTCAGATCAGAGCAATGGTGGAAACGTTATTCCAACTCCT 137
Query 109 GAAGAAGTTGCTACGTTCCTGCACAAAACTGTTGAAGAAGGTGGATGGGAAAAATGTTGG 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 138 GAAGAAGTTGCTACGTTCCTGCACAAAACTGTTGAAGAAGGTGGATGGGAAAAATGTTGG 197
Query 169 GAAGAAGAGATAACACCATGGGACCAAGGAAGAGCCACACCTCTCATTGTTCATCTTGTC 228
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 198 GAAGAAGAGATAACACCATGGGACCAAGGGAGAGCCACACCTCTCATTGTTCATCTTGTC 257
Query 229 GACACTTCCTCACTCCCACTTGGCCGTGCTCTTGTCCCCGGCTGTGGTGGAGGACACGAC 288
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 258 GACACTTCCTCACTCCCACTTGGCCGTGCTCTGGTCCCCGGCTGTGGTGGAGGACACGAC 317
Query 289 GTCGTTGCGATGGCAAGCCCCGAACGTTTCGTTGTTGGATTGGATATTTCCGAAAGCGCC 348
||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||
Sbjct 318 GTCGTTGCGATGGCAAGTCCTGAACGCTTCGTTGTTGGATTGGATATTTCCGAAAGCGCA 377
Query 349 CTCACGAAAGCTAATGAGACTTACGGCTCCTCACCAAAGGCAAAGTACTTTTCGTTCGTG 408
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 378 CTCGCGAAAGCTAATGAGACTTACGGCTCCTCACCAAAGGCAGAGTACTTTTCGTTCGTG 437
Query 409 AAGGAAGATGTTTTCACTTGGCGTCCTAAC-GAATTATTCGACTTTATCTTCGATTATGT 467
||||||||||||||||| |||||||||| | |||||||||||| | ||||||||||||||
Sbjct 438 AAGGAAGATGTTTTCACGTGGCGTCCTA-CTGAATTATTCGACCTCATCTTCGATTATGT 496
Query 468 GTTCTTCTGTGCTATTGAACCGGAGATGAGACCTGCATGGGCTAAATCCATGTATGAACT 527
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 497 GTTCTTCTGTGCCATTGAACCGGAGATGAGACCTGCATGGGCTAAATCTATGTATGAACT 556
Query 528 CTTAAAACCTGACGGCGAACTCATAACTCTCATGTATCCGATTACCGACCACGTTGGTGG 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 CTTAAAACCTGACGGCGAACTCATAACTCTCATGTATCCGATTACCGACCACGTTGGTGG 616
Query 588 ACCTCCCTACAAAGTAGATGTCTCTACCTACGAAGATGTGTTGGTTCCCGCAGGATTTAA 647
||||||||||||||||||||||||||||| |||||| |||||||| || |||||||||
Sbjct 617 ACCTCCCTACAAAGTAGATGTCTCTACCTTCGAAGAGGTGTTGGTGCCTATAGGATTTAA 676
Query 648 GGCAGTGTCTGTCGAGGAGAATCCACACGCCATTCCTACTCGTAAGGGGAAAGAGAAGCT 707
|||||||||||||||||||||||| ||||||||||| ||||| | |||||||||||
Sbjct 677 GGCAGTGTCTGTCGAGGAGAATCCTCACGCCATTCCAACTCG---GC--AAAGAGAAGCT 731
Query 708 TGGAAGGTGGAAGAAGATCAATTGATCCCTAAGAAAGAGATCTTACTGTTTAGTAAGAGT 767
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 732 GGGAAGGTGGAAGAAGATCAATTGATCCCTAAGAAAGAGATCTTACTGTTTGGTAAGAGT 791
Query 768 ATGATTACATGTGTAATCTACCAATCTATGAAGAGTAAAATGATTATCTCTTCCTTTATT 827
| ||| |||||| |||||| || | || | |||||||||||||| | ||||||||
Sbjct 792 --G-TTATATGTGTGATCTAC-AA---A-GA-G--TAAAATGATTATCT-T-CCTTTATT 838
Query 828 TACTCTATCCATG---CA-TGTTGATGATTATTATCTGTAACAATAAT 871
| |||||| ||| || |||||||||||||||| |||||||||||
Sbjct 839 TGCTCTATGTATGTTTCAATGTTGATGATTATTATGAGTAACAATAAT 886
> AT2G43920.1 | Symbols: HOL2, ATHOL2 | S-adenosyl-L-methionine-dependent
methyltransferases superfamily protein | chr2:18189008-18191348
REVERSE LENGTH=1095
Length=1095
Score = 830 bits (449), Expect = 0.0
Identities = 611/690 (89%), Gaps = 8/690 (1%)
Strand=Plus/Plus
Query 48 AATGGCTGAAGAACAAGAAAACTCAG-GTCAGAGCAATGGTGGAAACGTTATTCCAACTC 106
|||||||||||||||| |||| || | || | |||| |||||||||| || |||| ||||
Sbjct 100 AATGGCTGAAGAACAACAAAATTC-GAGTTATAGCATTGGTGGAAACATTCTTCCTACTC 158
Query 107 CTGAAGAAGTTGCTACGTTCCTGCACAAAACTGTTGAAGAAGGTGGATGGGAAAAATGTT 166
||||||||| |||||| |||| || | || ||||| |||||| |||||||| |||||||
Sbjct 159 CTGAAGAAGCTGCTACATTCCAGCCCCAAGTTGTTGCAGAAGGCGGATGGGACAAATGTT 218
Query 167 GGGAAGAAGAGATAACACCATGGGACCAAGGAAGAGCCACACCTCTCATTGTTCATCTTG 226
||||||| | | |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 219 GGGAAGACGGGGTAACACCATGGGACCAAGGAAGAGCCACACCTCTCATTCTTCATCTTC 278
Query 227 TCGACACTTCCTCACTCCCACTTGGCCGTGCTCTTGTCCCCGGCTGTGGTGGAGGACACG 286
||||| |||| | ||||| ||||||||| | ||||||||||||||||| ||||||||||
Sbjct 279 TCGACTCTTCAGCTCTCCCTCTTGGCCGTACCCTTGTCCCCGGCTGTGGCGGAGGACACG 338
Query 287 ACGTCGTTGCGATGGCAAGCCCCGAACGTTTCGTTGTTGGATTGGATATTTCCGA-AAGC 345
|||||||||||||||||||||| ||||||||||| ||||||||||||||||| || |||
Sbjct 339 ACGTCGTTGCGATGGCAAGCCCTGAACGTTTCGTAGTTGGATTGGATATTTCTGACAAG- 397
Query 346 GCCCTC-ACGAAAGCTAATGAGACTTACGGCTCCTCACCAAAGGCAAAGTACTTTTCGTT 404
|| ||| || ||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 398 GCTCTCAAC-AAAGCTAATGAGACTTACGGCTCCTCACCGAAGGCAGAGTACTTTTCGTT 456
Query 405 CGTGAAGGAAGATGTTTTCACTTGGCGTCCTAACGAATTATTCGACTTTATCTTCGATTA 464
|||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||
Sbjct 457 CGTGAAGGAAGATGTTTTCACTTGGCGTCCTAACGAATTATTTGACCTCATCTTCGATTA 516
Query 465 TGTGTTCTTCTGTGCTATTGAACCGGAGATGAGACCTGCATGGGCTAAATCCATGTATGA 524
|||||| ||||| || |||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 517 TGTGTTTTTCTGCGCAATTGAACCGGAGATGAGACCTGCATGGGGTAAATCCATGCATGA 576
Query 525 ACTCTTAAAACCTGACGGCGAACTCATAACTCTCATGTATCCGATTACCGACCACGTTGG 584
|||| | ||||||||||| ||||| |||||||| ||||||||||| |||||||||| ||
Sbjct 577 ACTCCTCAAACCTGACGGAGAACTTATAACTCTTATGTATCCGATGACCGACCACGAGGG 636
Query 585 TGGACCTCCCTACAAAGTAGATGTCTCTACCTACGAAGATGTGTTGGTTCCCGCAGGATT 644
|||| ||||||||||||||| | | ||| |||||||||||||||||||||| | ||||||
Sbjct 637 TGGAGCTCCCTACAAAGTAGCTTTGTCTTCCTACGAAGATGTGTTGGTTCCGGTAGGATT 696
Query 645 TAAGGCAGTGTCTGTCGAGGAGAATCCACACGCCATTCCTACTCGTAAGGGGAAAGAGAA 704
||| || ||||| || |||||||| ||| || ||||||| ||||||||||| ||||||||
Sbjct 697 TAAAGCGGTGTCCGTTGAGGAGAACCCAGACTCCATTCCCACTCGTAAGGGCAAAGAGAA 756
Query 705 GCTTG-GAAGGTGGAAGAAGATCAATTGAT 733
||||| || ||||||||||||| || ||||
Sbjct 757 GCTTGCGA-GGTGGAAGAAGATTAACTGAT 785
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42498088362
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5