BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483510
Length=827
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43940.1 | Symbols: ATHOL3, HOL3 | S-adenosyl-L-methionine-d... 1291 0.0
> AT2G43940.1 | Symbols: ATHOL3, HOL3 | S-adenosyl-L-methionine-dependent
methyltransferases superfamily protein | chr2:18195953-18197687
REVERSE LENGTH=842
Length=842
Score = 1291 bits (699), Expect = 0.0
Identities = 788/830 (95%), Gaps = 9/830 (1%)
Strand=Plus/Plus
Query 1 ATTGGTTTGCGTTCGTTGCTCCGATGGAAAACGCCGGTAAAGCTACGTCACTCCAATCTT 60
||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 ATTTGTTTGCGTTGGTTGATCCGATGGAAAACGCCGGTAAAGCTACGTCACTCCAATCGT 60
Query 61 CCCGTGATTTATTCCACCGGCTGATGAGCGAGAATTCTTCTGGTGGTGGTTGGGAGAAGA 120
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 61 CCCGTGATTTATTCCACCGGTTGATGAGCGAGAATTCTTC---TGGTGGTTGGGAGAAGA 117
Query 121 GTTGGGAAGCAGGAGCAACTCCATGGGACTTAGGAAAACCAACTCCGGTTATTGTGCATC 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 118 GTTGGGAAGCAGGAGCAACTCCATGGGACTTAGGAAAACCAACTCCGGTTATTGCGCATC 177
Query 181 TCGTCGAGACTGGTTCTTTGCCTAATGGCAGAGCTCTAGTTCCTGGTTGTGGAACTGGTT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TCGTCGAGACTGGTTCTTTGCCTAATGGCAGAGCTCTAGTTCCTGGTTGTGGAACTGGTT 237
Query 241 ATGATGTGGTGGCAATGGCCTCCCCTGATCGTCATGTCGTTGGACTGGATATATCTAAAA 300
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 238 ATGATGTGGTGGCAATGGCCTCCCCTGATCGTCATGTTGTTGGATTGGATATATCTAAAA 297
Query 301 CTGCGGTTGAGCGATCAACAAAGAAGTTTTCTTCATTGCCCAATGCAAAATACTTCTCCT 360
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 298 CTGCGGTTGAGCGATCAACAAAGAAGTTTTCTACATTGCCAAATGCAAAATACTTCTCCT 357
Query 361 TCTTGAGTGAAGACTTTTTCACTTGGGAGCCAGCTGAAAAATTTGATCTCATTTTCGATT 420
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 358 TCTTGAGTGAAGACTTTTTCACTTGGGAGCCAGCTGAAAAATTCGATCTCATTTTCGATT 417
Query 421 ATACCTTCTTCTGTGCCTTTGAACCTGGCGTGAGACCTCTATGGGCACAACAAATGGAGA 480
||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
Sbjct 418 ATACCTTCTTCTGTGCCTTTGAACCGGGCGTGAGACCTCTATGGGCACAACGAATGGAAA 477
Query 481 AACTTCTGAAACCCGGTGGAGAGCTTATAACATTGATGTTTCCTATTGATGAACGTTCTG 540
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AACTTCTGAAACCTGGTGGAGAGCTTATAACATTGATGTTTCCTATTGATGAACGTTCTG 537
Query 541 GAGGTCCTCCTTACAAAGTATCTGTGTCTGAGTATGAAAAAGTTCTGATTCCACTGGGTT 600
||||||||||||| |||||||||||||||| || || || ||||||||||||||||| |
Sbjct 538 GAGGTCCTCCTTATGAAGTATCTGTGTCTGAATACGAGAAGGTTCTGATTCCACTGGGGT 597
Query 601 TTGAGGCAATCTCCATTGTGGATAACGAACTTGCTGTAGGACCACGCAAGGGTATGGAGA 660
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 598 TTGAGGCAATCTCCATTGTTGATAACGAACTTGCTGTAGGACCACGCAAGGGAATGGAGA 657
Query 661 AGCTTGGAAGATGGAAGAAATCTTCCACATTTCACTCCACCTTGTGATTTGTGAT-GAAT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 658 AGCTTGGAAGATGGAAGAAATCTTCCACATTTCACTCCACCTTGTGATTTGTGATAGA-T 716
Query 720 GCTCATATGCTTCA-ATGTGGATGTTTTGTGAATTTGTCACTGATAAATTAAACTTGTAG 778
||||||||||| | || |||||||||||||||||||||||||| |||||||||||||||
Sbjct 717 ACTCATATGCTT-ATATCTGGATGTTTTGTGAATTTGTCACTGAGAAATTAAACTTGTAG 775
Query 779 GGCC-ATTGAATGGGAAGAGGAACCTGAATAAGTATTTGTAAACACATGT 827
||| |||||| | || | |||| ||||| ||||||||||||||||||||
Sbjct 776 GGCATATTGAAAGAGATG-GGAATCTGAAAAAGTATTTGTAAACACATGT 824
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40287785894
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5